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The map label for this gene is ypdF [C]

Identifier: 21674954

GI number: 21674954

Start: 2026992

End: 2028155

Strand: Reverse

Name: ypdF [C]

Synonym: CT2145

Alternate gene names: 21674954

Gene position: 2028155-2026992 (Counterclockwise)

Preceding gene: 21674955

Following gene: 21674952

Centisome position: 94.12

GC content: 60.22

Gene sequence:

>1164_bases
ATGACACGCATTGAAATCGGCGAGCGTATCAGGCGCCTGCAAGCGCGTCTTGCTGAAAGCGGGATGCAGGCAGCGCTTTT
GCTGATGCCCGTCGATATTTTCTACTTCACCGGTACGCGCCAGAACTCGGCGCTCTGGGTTCCCGCCGAGGGTAAGCCGG
TGCTGCTCGTGCGCAAAAGCCTCGTTCGAGCAAAAGCTGAAGGGCTGATCGACGACATTCGCCCCTTTCCGTCGAGCAAG
GAGCTTTCGGCGCTACTCGGCCGCGAAGGCGACAAGGTTGGCATGACCTTCGACGCCGTGCCGATGGCGCAGCACGCCTG
GTACTCGAAGGTGTTGCCGGGGCGTACTTTCGCCGACGTCACCATGATTGTGCGCGAGCTGCGCTCGGTCAAGTCATCTG
CCGAAATTGAGATGCTCCGCCACAGCGCCGAGATGCTGGTCTCGATTTTCTTTGAAGTGCCGACTTTCCTGAAAACGGGG
ATGCGTGAGGTTGATCTCGCCGCCGAAGTGGAGTACCGGTTGCGCAGGATCGGCCACGAGGGGTACGTGCGGATGCGGGC
GTTTAACCAGGAGCTCTTCGGCGGCATGGTGGTGTCGGGCGGCGCGGCGAGCTACGGCTTTTTCGATGGGGCTGTCACCG
GCAAAGGTCTTTCGAGCGCCTCGCCACAAGGAGCGTCTCTCGATGCAATTCGAGAGAACGAGCCGGTGCTGGTCGATTTT
GCCGGAGTTTTTAACGGTTACATTATTGATATGACCCGCATGTTTGTCATCGGCAGGCTCGACCCTGAATTGCAGCGGGC
ATTCGATGTTTCGCTTGAAATCCAGGAGGCGGTGCGTCGGGCGATGGTGCCGGGAGCGATCGGCGAGGAGATTTACAAGC
AGGCCGCCGCGATGGCCGAAGCGGCAGGTCTCGGTTGTAACTTCATGGGAATGCCGGGCGAGCAGTCGCGCTTCGTTGGC
CACGGTGTTGGCCTCGAGCTCGACGAACTGCCGCTGCTCGCGCAAGGTTTTGGCATGCCGTTGCAGGCAGGCCAGGTGGT
GGCCGTCGAGCCGAAATTCGTCATTCCCGGCAAAGGAGCGATCGGCATCGAGAACACCTTCGTGGTCACGGAACATGGCG
GTGAACGGCTGACCGGATTATCCGACGAAGTTGTCGAGCTTTGA

Upstream 100 bases:

>100_bases
GCCCGGAGGATCGAACGGCATTGAGGGATCAGATTACCATTCGATCACGATGTGGATTGTGCCGAGTCCGGAACTTTGAT
AACCATTTGAAAGGATTATG

Downstream 100 bases:

>100_bases
TGCGGGCAATAAAAAAGGCTCCGGTTTTTCCGGAGCCTCGATAAGGCGTATTGACAATGCCTCTCAGAAGCTGTACCTGA
TACCAGCAAGGATATTGCTG

Product: peptidase, M24 family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 387; Mature: 386

Protein sequence:

>387_residues
MTRIEIGERIRRLQARLAESGMQAALLLMPVDIFYFTGTRQNSALWVPAEGKPVLLVRKSLVRAKAEGLIDDIRPFPSSK
ELSALLGREGDKVGMTFDAVPMAQHAWYSKVLPGRTFADVTMIVRELRSVKSSAEIEMLRHSAEMLVSIFFEVPTFLKTG
MREVDLAAEVEYRLRRIGHEGYVRMRAFNQELFGGMVVSGGAASYGFFDGAVTGKGLSSASPQGASLDAIRENEPVLVDF
AGVFNGYIIDMTRMFVIGRLDPELQRAFDVSLEIQEAVRRAMVPGAIGEEIYKQAAAMAEAAGLGCNFMGMPGEQSRFVG
HGVGLELDELPLLAQGFGMPLQAGQVVAVEPKFVIPGKGAIGIENTFVVTEHGGERLTGLSDEVVEL

Sequences:

>Translated_387_residues
MTRIEIGERIRRLQARLAESGMQAALLLMPVDIFYFTGTRQNSALWVPAEGKPVLLVRKSLVRAKAEGLIDDIRPFPSSK
ELSALLGREGDKVGMTFDAVPMAQHAWYSKVLPGRTFADVTMIVRELRSVKSSAEIEMLRHSAEMLVSIFFEVPTFLKTG
MREVDLAAEVEYRLRRIGHEGYVRMRAFNQELFGGMVVSGGAASYGFFDGAVTGKGLSSASPQGASLDAIRENEPVLVDF
AGVFNGYIIDMTRMFVIGRLDPELQRAFDVSLEIQEAVRRAMVPGAIGEEIYKQAAAMAEAAGLGCNFMGMPGEQSRFVG
HGVGLELDELPLLAQGFGMPLQAGQVVAVEPKFVIPGKGAIGIENTFVVTEHGGERLTGLSDEVVEL
>Mature_386_residues
TRIEIGERIRRLQARLAESGMQAALLLMPVDIFYFTGTRQNSALWVPAEGKPVLLVRKSLVRAKAEGLIDDIRPFPSSKE
LSALLGREGDKVGMTFDAVPMAQHAWYSKVLPGRTFADVTMIVRELRSVKSSAEIEMLRHSAEMLVSIFFEVPTFLKTGM
REVDLAAEVEYRLRRIGHEGYVRMRAFNQELFGGMVVSGGAASYGFFDGAVTGKGLSSASPQGASLDAIRENEPVLVDFA
GVFNGYIIDMTRMFVIGRLDPELQRAFDVSLEIQEAVRRAMVPGAIGEEIYKQAAAMAEAAGLGCNFMGMPGEQSRFVGH
GVGLELDELPLLAQGFGMPLQAGQVVAVEPKFVIPGKGAIGIENTFVVTEHGGERLTGLSDEVVEL

Specific function: Unknown

COG id: COG0006

COG function: function code E; Xaa-Pro aminopeptidase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M24B family [H]

Homologues:

Organism=Escherichia coli, GI1788728, Length=265, Percent_Identity=27.1698113207547, Blast_Score=86, Evalue=5e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000587
- InterPro:   IPR000994
- InterPro:   IPR001131 [H]

Pfam domain/function: PF01321 Creatinase_N; PF00557 Peptidase_M24 [H]

EC number: 3.4.-.- [C]

Molecular weight: Translated: 42133; Mature: 42002

Theoretical pI: Translated: 5.08; Mature: 5.08

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
4.4 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRIEIGERIRRLQARLAESGMQAALLLMPVDIFYFTGTRQNSALWVPAEGKPVLLVRKS
CCCCHHHHHHHHHHHHHHHCCHHHEHHEEEEEEEEEECCCCCCEEEEECCCCEEEEHHHH
LVRAKAEGLIDDIRPFPSSKELSALLGREGDKVGMTFDAVPMAQHAWYSKVLPGRTFADV
HHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCEEECCCCHHHHHHHHHCCCCCHHHHH
TMIVRELRSVKSSAEIEMLRHSAEMLVSIFFEVPTFLKTGMREVDLAAEVEYRLRRIGHE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCC
GYVRMRAFNQELFGGMVVSGGAASYGFFDGAVTGKGLSSASPQGASLDAIRENEPVLVDF
CEEEHHHHHHHHHCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCEEEEE
AGVFNGYIIDMTRMFVIGRLDPELQRAFDVSLEIQEAVRRAMVPGAIGEEIYKQAAAMAE
HHHHCCHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHH
AAGLGCNFMGMPGEQSRFVGHGVGLELDELPLLAQGFGMPLQAGQVVAVEPKFVIPGKGA
HHCCCCEECCCCCCCCCEEECCCCCCHHCCCHHHHCCCCCCCCCCEEEECCEEEECCCCC
IGIENTFVVTEHGGERLTGLSDEVVEL
CCCCCEEEEECCCCCCCCCCCHHHHCC
>Mature Secondary Structure 
TRIEIGERIRRLQARLAESGMQAALLLMPVDIFYFTGTRQNSALWVPAEGKPVLLVRKS
CCCHHHHHHHHHHHHHHHCCHHHEHHEEEEEEEEEECCCCCCEEEEECCCCEEEEHHHH
LVRAKAEGLIDDIRPFPSSKELSALLGREGDKVGMTFDAVPMAQHAWYSKVLPGRTFADV
HHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCEEECCCCHHHHHHHHHCCCCCHHHHH
TMIVRELRSVKSSAEIEMLRHSAEMLVSIFFEVPTFLKTGMREVDLAAEVEYRLRRIGHE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCC
GYVRMRAFNQELFGGMVVSGGAASYGFFDGAVTGKGLSSASPQGASLDAIRENEPVLVDF
CEEEHHHHHHHHHCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCEEEEE
AGVFNGYIIDMTRMFVIGRLDPELQRAFDVSLEIQEAVRRAMVPGAIGEEIYKQAAAMAE
HHHHCCHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHH
AAGLGCNFMGMPGEQSRFVGHGVGLELDELPLLAQGFGMPLQAGQVVAVEPKFVIPGKGA
HHCCCCEECCCCCCCCCEEECCCCCCHHCCCHHHHCCCCCCCCCCEEEECCEEEECCCCC
IGIENTFVVTEHGGERLTGLSDEVVEL
CCCCCEEEEECCCCCCCCCCCHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA