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The map label for this gene is ygcB [H]

Identifier: 21674782

GI number: 21674782

Start: 1868933

End: 1871518

Strand: Direct

Name: ygcB [H]

Synonym: CT1971

Alternate gene names: 21674782

Gene position: 1868933-1871518 (Clockwise)

Preceding gene: 21674780

Following gene: 21674783

Centisome position: 86.73

GC content: 66.2

Gene sequence:

>2586_bases
ATGCGTCACTACCCCAAATCCCTGAAAAATGCGGATGCGCCCGTTGAGCATCCGCCGCTGCCGCTCGAACGCTGCCTCGC
GAAATCACGGAAAATCGACGCCAGCCGCTCCGTTGCCGGGCGAACGGTGCTCGACCACTGCCGCATCGCGGGCGAGGTGG
CACGGGAGCTGATCGCCCGCTCGCCCGCCTTCCTGCGCGAGTCGTTTTTTCCGGACGGCTCGGCGCTCGTCGCCGCCAGC
CACGACATCGGCAAGGTCAGCCCGACCTTCCAGAAAAAAATCTACACGGCGATCGGGAACGCCGATCCGACGATTCTCGA
TGTGTTGAACGATGTCGATTCGGAGATCGAAAAAAATTGGGGCGGCCACGCGGGCGTCAGTCAGTGCGCTCTCGAAGCAC
TGGAGGCAGGCAAAGACATCGCCGCGATTGCCGGTTGCCACCACGGCTACGCGCCGAAACTCGCGGGCAAAACCGCTGAT
GCGGAGGCGTTCGGCGGCGCGGCGTGGCAACGTCAGCGGGCGCGGCTGCTGGAGCGGCTCGCGGAGGCGACAGGCGAGCG
GTTCCCGAAAATCCGCAATTTGCTGCACGCCCGCGTGCTGGCCGGGCTGACCTCCGTGGCGGACTGGATCGGCTCCGGCG
CGACGTTCGACGATCCCGGCGAGGCGTGGCAAAGCTGCATCGCCGACGCCGTCGATGCAGCCGGATTCACGCCGCCGCGC
CTCAGGCCGGGGCTGTCGTTCCGGGAGATTTTCGGGTTCGAGGCGCGCCCGATCCAGCGCAGCCTGATAGAAAAGGCCTG
TCGCCCCGGCGCGTACATCCTCGAAGCGCCGATGGGCATCGGCAAAACCGAGGCCGCGCTCTACGCCGCCTACGCCCTCG
TATCGGCTGGCAAGGCTCGCGGCATCTACTTCGCCTTGCCGACGCAGCTCACCTCCAACCGCATCCACGAGCGGGTCGAG
CGCTTTCTCGACAAAGTGCTCGAAGCGGACTCGCCCCACCGAAACGCGCTGCTCGTGCACAGCAACGCTGGGCTGCAAAA
GTTCGAGTTCGGCGCGGATGCCGCCCCCGGCTGCTCGTGGTTCAGCGCATCGAAGCGCGGGCTGCTCGCCCCCTTCGCCG
TCGGCACCATCGACCAGGCGCTGATGGCCTCGATGAACGTCAAACACGGCTTCGTCCGCGCCTTCGGCTTGGCGGGCAAA
GTGGTCATTCTCGACGAAGTGCACAGCTACGACGCCTACACTGGCACCATTCTCGACCGGCTGGTGCGCGAGTTGCGGCA
GCTGCATTGCACGGTCATCATCCTCAGCGCCACCCTCACCGGAGAGCGCCGAAGCGCCCTGCTCGGCGCGGCCCGAAGCG
CGGAGGCGGCCTACCCGCTCATCTCCGCCCTGCCCGCCGAGGCGCGGGAACCGGTCGAAATCGCGCCGGAAACGATGCCC
GGAAACCGTGTCGCCATCCACCAGACGCTCGACATCGACGAAGCAATGGATGAAGCGCTCAACCGGGCGGATTCCGGCCA
GCAGGTGCTTTGGATCGAAAACACCGTCACCGAAGCGCAGGAGGCGTTCAAACTCCTCGCCGCCCGGTCGAGCGGCATGG
CGATCGAGTGCGGCCTGCTCCATTCGCGCTTCATCCACTGCGACCGCGAGGCGCTCGAAGAGAAGTGGGTGACGCGCTAC
GGTGCGGATGGTGCGGCGGCGCGGCGCGAGCGGGGGCGGATTCTCGTTGGCACGCAGGTGCTCGAACAGTCGCTCGACAT
CGACGCCGATTTCCTCGTCACGCGCCTCTGCCCCACCGACATGCTTTTGCAGCGCATCGGACGCTTGTGGCGGCACAGCT
TCCACCAGCGCCCTGCCGGAGCGAGGTGCGAGGCGTGGATCGTCAGCGCACAGTTCGAGGCCGCCGAGCAGAATCCCGGC
GAGGCGTTCGGCAAAAGCGCGAAAGTCTATAGCCCATACGTGCTCTTGCGAACGCTTCAGGCGTGGAGCGGCGTGGAAGC
GCTTTCGCTGCCGGGCGACATTCGCGACCTGCTCGAACGCACCTACGAAGCGAGGCCGGAGAGCGAGGCGATGGCAAAAC
ACAAAGCCGACCTCCAGCGGCGCAGGGAGATACTCGAAAGCTTCGCGCTCCAGGGGGTCTCGTTCGGCCTCGACGCAAGA
CCCGACACCAATGTCGCCACCCGTTACAGCGACATCGACACCGTCGAGCTGCTCCTGCTGCAATCGGTCAGCCACAACCA
TGCGGCGCACGAAACCACGGTGACGCTGCTCGACGGCCAACAGCTCACCCTGCCGCACGACTTCGCCGCCGGGCGGAAGC
GCGAGCAGCGGCAGCTCGCCGCCCGCCTCGCCACGCAAACCCTCAAGGTGGCCGAGTACGCCGCGCCCGCCGACCCCGGA
CGCAACACGCTCACGTGGCTCAAGCCCTACTTCTACCTCGGCGATCCGTCGAAGAGCGAAAGCCTTTTGCGCGTCGCCAT
CGTGGGCGAGGGTGGCCTGTTGAGGTTGCCCGGTGGCGGCGCGGCGGCGGAGAAATACGAACTGAGTTACAACCCACGAC
TGGGCTACCAGTACAAAAAACGATAA

Upstream 100 bases:

>100_bases
ACCCCGACCCCGCGCGCCAGCAATTCCGGTTCATTGTGGCCCGGTTGACCGTTTTTGCCTTGCATGACAACGCCGTTCAA
ACCTCACAACCCGATCGCAT

Downstream 100 bases:

>100_bases
CCCTCATCGACACAGCCATGCACAACCGTTTCAACCTGATCGACGAGCCGTGGATTCCGGCCATCGGCAAAGGCCTCGTG
AGTCTCGCCGACATCTTCAG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 861; Mature: 861

Protein sequence:

>861_residues
MRHYPKSLKNADAPVEHPPLPLERCLAKSRKIDASRSVAGRTVLDHCRIAGEVARELIARSPAFLRESFFPDGSALVAAS
HDIGKVSPTFQKKIYTAIGNADPTILDVLNDVDSEIEKNWGGHAGVSQCALEALEAGKDIAAIAGCHHGYAPKLAGKTAD
AEAFGGAAWQRQRARLLERLAEATGERFPKIRNLLHARVLAGLTSVADWIGSGATFDDPGEAWQSCIADAVDAAGFTPPR
LRPGLSFREIFGFEARPIQRSLIEKACRPGAYILEAPMGIGKTEAALYAAYALVSAGKARGIYFALPTQLTSNRIHERVE
RFLDKVLEADSPHRNALLVHSNAGLQKFEFGADAAPGCSWFSASKRGLLAPFAVGTIDQALMASMNVKHGFVRAFGLAGK
VVILDEVHSYDAYTGTILDRLVRELRQLHCTVIILSATLTGERRSALLGAARSAEAAYPLISALPAEAREPVEIAPETMP
GNRVAIHQTLDIDEAMDEALNRADSGQQVLWIENTVTEAQEAFKLLAARSSGMAIECGLLHSRFIHCDREALEEKWVTRY
GADGAAARRERGRILVGTQVLEQSLDIDADFLVTRLCPTDMLLQRIGRLWRHSFHQRPAGARCEAWIVSAQFEAAEQNPG
EAFGKSAKVYSPYVLLRTLQAWSGVEALSLPGDIRDLLERTYEARPESEAMAKHKADLQRRREILESFALQGVSFGLDAR
PDTNVATRYSDIDTVELLLLQSVSHNHAAHETTVTLLDGQQLTLPHDFAAGRKREQRQLAARLATQTLKVAEYAAPADPG
RNTLTWLKPYFYLGDPSKSESLLRVAIVGEGGLLRLPGGGAAAEKYELSYNPRLGYQYKKR

Sequences:

>Translated_861_residues
MRHYPKSLKNADAPVEHPPLPLERCLAKSRKIDASRSVAGRTVLDHCRIAGEVARELIARSPAFLRESFFPDGSALVAAS
HDIGKVSPTFQKKIYTAIGNADPTILDVLNDVDSEIEKNWGGHAGVSQCALEALEAGKDIAAIAGCHHGYAPKLAGKTAD
AEAFGGAAWQRQRARLLERLAEATGERFPKIRNLLHARVLAGLTSVADWIGSGATFDDPGEAWQSCIADAVDAAGFTPPR
LRPGLSFREIFGFEARPIQRSLIEKACRPGAYILEAPMGIGKTEAALYAAYALVSAGKARGIYFALPTQLTSNRIHERVE
RFLDKVLEADSPHRNALLVHSNAGLQKFEFGADAAPGCSWFSASKRGLLAPFAVGTIDQALMASMNVKHGFVRAFGLAGK
VVILDEVHSYDAYTGTILDRLVRELRQLHCTVIILSATLTGERRSALLGAARSAEAAYPLISALPAEAREPVEIAPETMP
GNRVAIHQTLDIDEAMDEALNRADSGQQVLWIENTVTEAQEAFKLLAARSSGMAIECGLLHSRFIHCDREALEEKWVTRY
GADGAAARRERGRILVGTQVLEQSLDIDADFLVTRLCPTDMLLQRIGRLWRHSFHQRPAGARCEAWIVSAQFEAAEQNPG
EAFGKSAKVYSPYVLLRTLQAWSGVEALSLPGDIRDLLERTYEARPESEAMAKHKADLQRRREILESFALQGVSFGLDAR
PDTNVATRYSDIDTVELLLLQSVSHNHAAHETTVTLLDGQQLTLPHDFAAGRKREQRQLAARLATQTLKVAEYAAPADPG
RNTLTWLKPYFYLGDPSKSESLLRVAIVGEGGLLRLPGGGAAAEKYELSYNPRLGYQYKKR
>Mature_861_residues
MRHYPKSLKNADAPVEHPPLPLERCLAKSRKIDASRSVAGRTVLDHCRIAGEVARELIARSPAFLRESFFPDGSALVAAS
HDIGKVSPTFQKKIYTAIGNADPTILDVLNDVDSEIEKNWGGHAGVSQCALEALEAGKDIAAIAGCHHGYAPKLAGKTAD
AEAFGGAAWQRQRARLLERLAEATGERFPKIRNLLHARVLAGLTSVADWIGSGATFDDPGEAWQSCIADAVDAAGFTPPR
LRPGLSFREIFGFEARPIQRSLIEKACRPGAYILEAPMGIGKTEAALYAAYALVSAGKARGIYFALPTQLTSNRIHERVE
RFLDKVLEADSPHRNALLVHSNAGLQKFEFGADAAPGCSWFSASKRGLLAPFAVGTIDQALMASMNVKHGFVRAFGLAGK
VVILDEVHSYDAYTGTILDRLVRELRQLHCTVIILSATLTGERRSALLGAARSAEAAYPLISALPAEAREPVEIAPETMP
GNRVAIHQTLDIDEAMDEALNRADSGQQVLWIENTVTEAQEAFKLLAARSSGMAIECGLLHSRFIHCDREALEEKWVTRY
GADGAAARRERGRILVGTQVLEQSLDIDADFLVTRLCPTDMLLQRIGRLWRHSFHQRPAGARCEAWIVSAQFEAAEQNPG
EAFGKSAKVYSPYVLLRTLQAWSGVEALSLPGDIRDLLERTYEARPESEAMAKHKADLQRRREILESFALQGVSFGLDAR
PDTNVATRYSDIDTVELLLLQSVSHNHAAHETTVTLLDGQQLTLPHDFAAGRKREQRQLAARLATQTLKVAEYAAPADPG
RNTLTWLKPYFYLGDPSKSESLLRVAIVGEGGLLRLPGGGAAAEKYELSYNPRLGYQYKKR

Specific function: Unknown

COG id: COG1203

COG function: function code R; Predicted helicases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 helicase C-terminal domain [H]

Homologues:

Organism=Escherichia coli, GI1789119, Length=534, Percent_Identity=32.0224719101124, Blast_Score=211, Evalue=1e-55,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006483
- InterPro:   IPR014001
- InterPro:   IPR011545
- InterPro:   IPR001650
- InterPro:   IPR006474
- InterPro:   IPR014021 [H]

Pfam domain/function: PF00270 DEAD [H]

EC number: NA

Molecular weight: Translated: 94074; Mature: 94074

Theoretical pI: Translated: 7.37; Mature: 7.37

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRHYPKSLKNADAPVEHPPLPLERCLAKSRKIDASRSVAGRTVLDHCRIAGEVARELIAR
CCCCCCHHCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
SPAFLRESFFPDGSALVAASHDIGKVSPTFQKKIYTAIGNADPTILDVLNDVDSEIEKNW
CHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCC
GGHAGVSQCALEALEAGKDIAAIAGCHHGYAPKLAGKTADAEAFGGAAWQRQRARLLERL
CCCCCHHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHH
AEATGERFPKIRNLLHARVLAGLTSVADWIGSGATFDDPGEAWQSCIADAVDAAGFTPPR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCC
LRPGLSFREIFGFEARPIQRSLIEKACRPGAYILEAPMGIGKTEAALYAAYALVSAGKAR
CCCCCCHHHHHCCCCCHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCC
GIYFALPTQLTSNRIHERVERFLDKVLEADSPHRNALLVHSNAGLQKFEFGADAAPGCSW
CEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCEEEECCCCCCCCCCH
FSASKRGLLAPFAVGTIDQALMASMNVKHGFVRAFGLAGKVVILDEVHSYDAYTGTILDR
HHHCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCEEEEECHHCCCCHHHHHHHH
LVRELRQLHCTVIILSATLTGERRSALLGAARSAEAAYPLISALPAEAREPVEIAPETMP
HHHHHHHHHHEEEEEEEECCCHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCEECCCCCC
GNRVAIHQTLDIDEAMDEALNRADSGQQVLWIENTVTEAQEAFKLLAARSSGMAIECGLL
CCEEEEEEECCHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHHHHHHHCCCCCEEEEHHH
HSRFIHCDREALEEKWVTRYGADGAAARRERGRILVGTQVLEQSLDIDADFLVTRLCPTD
HHHHHHCCHHHHHHHHHHHCCCCCHHHHHHCCCEEEEHHHHHHHCCCCHHHHHHHHCCHH
MLLQRIGRLWRHSFHQRPAGARCEAWIVSAQFEAAEQNPGEAFGKSAKVYSPYVLLRTLQ
HHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEHHHCCCCCHHHHCCCCCCCCHHHHHHHHH
AWSGVEALSLPGDIRDLLERTYEARPESEAMAKHKADLQRRREILESFALQGVSFGLDAR
HHCCCCEECCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
PDTNVATRYSDIDTVELLLLQSVSHNHAAHETTVTLLDGQQLTLPHDFAAGRKREQRQLA
CCCCHHHCCCCCHHHHHHHHHHHHCCCCCCCCEEEEECCCEECCCCHHHHCCHHHHHHHH
ARLATQTLKVAEYAAPADPGRNTLTWLKPYFYLGDPSKSESLLRVAIVGEGGLLRLPGGG
HHHHHHHHHHHHHCCCCCCCCCCCCEECCEEEECCCCCCCCEEEEEEECCCCEEECCCCC
AAAEKYELSYNPRLGYQYKKR
CCCCEEEECCCCCCCCCCCCC
>Mature Secondary Structure
MRHYPKSLKNADAPVEHPPLPLERCLAKSRKIDASRSVAGRTVLDHCRIAGEVARELIAR
CCCCCCHHCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
SPAFLRESFFPDGSALVAASHDIGKVSPTFQKKIYTAIGNADPTILDVLNDVDSEIEKNW
CHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCC
GGHAGVSQCALEALEAGKDIAAIAGCHHGYAPKLAGKTADAEAFGGAAWQRQRARLLERL
CCCCCHHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHH
AEATGERFPKIRNLLHARVLAGLTSVADWIGSGATFDDPGEAWQSCIADAVDAAGFTPPR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCC
LRPGLSFREIFGFEARPIQRSLIEKACRPGAYILEAPMGIGKTEAALYAAYALVSAGKAR
CCCCCCHHHHHCCCCCHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCC
GIYFALPTQLTSNRIHERVERFLDKVLEADSPHRNALLVHSNAGLQKFEFGADAAPGCSW
CEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCEEEECCCCCCCCCCH
FSASKRGLLAPFAVGTIDQALMASMNVKHGFVRAFGLAGKVVILDEVHSYDAYTGTILDR
HHHCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCEEEEECHHCCCCHHHHHHHH
LVRELRQLHCTVIILSATLTGERRSALLGAARSAEAAYPLISALPAEAREPVEIAPETMP
HHHHHHHHHHEEEEEEEECCCHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCEECCCCCC
GNRVAIHQTLDIDEAMDEALNRADSGQQVLWIENTVTEAQEAFKLLAARSSGMAIECGLL
CCEEEEEEECCHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHHHHHHHCCCCCEEEEHHH
HSRFIHCDREALEEKWVTRYGADGAAARRERGRILVGTQVLEQSLDIDADFLVTRLCPTD
HHHHHHCCHHHHHHHHHHHCCCCCHHHHHHCCCEEEEHHHHHHHCCCCHHHHHHHHCCHH
MLLQRIGRLWRHSFHQRPAGARCEAWIVSAQFEAAEQNPGEAFGKSAKVYSPYVLLRTLQ
HHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEHHHCCCCCHHHHCCCCCCCCHHHHHHHHH
AWSGVEALSLPGDIRDLLERTYEARPESEAMAKHKADLQRRREILESFALQGVSFGLDAR
HHCCCCEECCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
PDTNVATRYSDIDTVELLLLQSVSHNHAAHETTVTLLDGQQLTLPHDFAAGRKREQRQLA
CCCCHHHCCCCCHHHHHHHHHHHHCCCCCCCCEEEEECCCEECCCCHHHHCCHHHHHHHH
ARLATQTLKVAEYAAPADPGRNTLTWLKPYFYLGDPSKSESLLRVAIVGEGGLLRLPGGG
HHHHHHHHHHHHHCCCCCCCCCCCCEECCEEEECCCCCCCCEEEEEEECCCCEEECCCCC
AAAEKYELSYNPRLGYQYKKR
CCCCEEEECCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503; 2005873; 7984428 [H]