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The map label for this gene is ycbB [H]

Identifier: 21674674

GI number: 21674674

Start: 1762227

End: 1763942

Strand: Reverse

Name: ycbB [H]

Synonym: CT1862

Alternate gene names: 21674674

Gene position: 1763942-1762227 (Counterclockwise)

Preceding gene: 21674675

Following gene: 21674673

Centisome position: 81.86

GC content: 54.14

Gene sequence:

>1716_bases
TTGATGGTTCCTTTTGTATTGCTCTGGTTCGCGCTGATGCCGGTCATCAGCATGGTATTGCCGCTTCAGGCCTACGCCGC
TGAAAACACTGCCTCTCGTGAACTTCCTGACCAGGCGGTCAAGACGTATCTGAAGAGTTATCTCGACCGTCTCGACCGTC
TGGATGCCTCTTCCTCTTCTGGCCGCATTGAAATTGATGGTCAGTTGCAGCGGTTTTACAAAGCACTGGATTATCGTGTC
GCATGGACCAATCGCAAGGCTATTGCCCGCCTTGTTGAGCTTGTCGGCGAGTGTGAAAGTGACGGGCTCAATCCCTCCGA
TTACCATTACGACCAGATCAAGGAATTTGCGGCAAATCCTCCCGGATCGCCGGCATTGAAAGCGAAGGCCGATCTTTTGA
TGACCGACGCCCTGTTTTCGCTGATGTCGCACCTGCGCTCGGGCAAGGTTATGCCCAGGGCGCTCGATTCGAACTGGAAC
CTCCCGGTCCCAAAGCCAGCCGCGAACTATGACCAGATGCTGATGACAGCGGTCATGGGGAGCAAGTTTCCCGAGATGAT
CTCGGTGTTGAGGAACCCGTCGCCCGAGTATGTGCTTCTGCGCAAAAATCTTTTACGCTACCGGAAGATCGCTGAAAACG
GCGGATGGCAGCCGGTATACCAGGGGCCCAATATTGAAAAAGTCGGCCAGGTCGATAAGCGTATGCCGCTTATCCGCCAG
CGTCTCATCCTGTCGGGTGACCTTGCGGCCGATAAGCTTGTCGCCCCGGCAGACAGTTCCCTATCCTCCGCTGCTCCTGT
GCCTTCCGATCAGGTTTACACCCAGGAGCTGTTCGATGCCGTGCTGGCCTTTCAGCAAAGTCACGGACTGTCAGCTGACG
GCATCATAGGCCTTGAAACTCTTAATGCCATGAACTATCCTGCCGAATTGCGGGCCGATCAGATTCGTGTGAATCTCGAA
CGGGAGCGCTGGTATGGCGGTATTCTGGGCGGCACGTATGTGATGGTGAACATCCCGGCATTTTCGCTCAAATATGTCAA
GGATAACGAGGTTCGCTGGAAGTCGCGGGTTATCGTCGGAAAGCCCGATACACAGACACCGATTTTTGCCGCCCAAATAC
AATCTGTCACTTTCAATCCCCACTGGGTGATTCCTCCGGGTATTCTGTCGAAGGAGGCCATTCCGGCGATCAGGAAGGAT
ATCGGCTACCTCGCAAAGCACCAGTTGACTGTTGTGGACAGCAATGGCAAACCGGTTGATCCGTCCCGGGTCAACTGGTA
CAGTGATGGTGGATTCCCGTACCGGCTGGTTCAGGCTTCGGGTGATGACGGCTCGCTGGGCAGAATCAAGTTCAACATGC
CCAACCGTTTCATGGTCTACATGCACGACACGCCGACCAAGCCGTTGTTTGAACGCAGCATGCGGGCTTACAGCCACGGA
TGCGTCAGGGTTGACCGGCCTTACGAACTTGCCGAGCAGCTGATGCGTGATTCCAAAAATTGGAGCCTATCGAAGATCGA
GGCCGCTATCAATACTGGTAAGACGCGCACGATACCTCTTACAGTCAAGGTCCCGGTCTATTTCTTTTACCAGACCGCTT
TTGCCGATGGAAACAAAATTGGCTTCAGGAATGACATCTATGACAGAGACAAAAAGTTGCTCGATGCCCTTAACAGCAAC
CAATGGGGCCGTAGTGTAGAGGAGGCCACGCGATAG

Upstream 100 bases:

>100_bases
TCACCAAGGGGAGGACTATGCTTCCCGTTCTGTTGTACTCAATCCCAAACTTGCGCTTGGCAGCGGGAAGAGTAAAAATC
CTGCATAAGCTTAAAATTTA

Downstream 100 bases:

>100_bases
CCTGTTTGCCCGGAACCTCAAGCCATCGCCCCCATGCCATTTACCGTTACCATTGAAGTCTCGAAGCAGTTCGAGACTTC
AACCTTGCCAGAGAAGGTTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 571; Mature: 571

Protein sequence:

>571_residues
MMVPFVLLWFALMPVISMVLPLQAYAAENTASRELPDQAVKTYLKSYLDRLDRLDASSSSGRIEIDGQLQRFYKALDYRV
AWTNRKAIARLVELVGECESDGLNPSDYHYDQIKEFAANPPGSPALKAKADLLMTDALFSLMSHLRSGKVMPRALDSNWN
LPVPKPAANYDQMLMTAVMGSKFPEMISVLRNPSPEYVLLRKNLLRYRKIAENGGWQPVYQGPNIEKVGQVDKRMPLIRQ
RLILSGDLAADKLVAPADSSLSSAAPVPSDQVYTQELFDAVLAFQQSHGLSADGIIGLETLNAMNYPAELRADQIRVNLE
RERWYGGILGGTYVMVNIPAFSLKYVKDNEVRWKSRVIVGKPDTQTPIFAAQIQSVTFNPHWVIPPGILSKEAIPAIRKD
IGYLAKHQLTVVDSNGKPVDPSRVNWYSDGGFPYRLVQASGDDGSLGRIKFNMPNRFMVYMHDTPTKPLFERSMRAYSHG
CVRVDRPYELAEQLMRDSKNWSLSKIEAAINTGKTRTIPLTVKVPVYFFYQTAFADGNKIGFRNDIYDRDKKLLDALNSN
QWGRSVEEATR

Sequences:

>Translated_571_residues
MMVPFVLLWFALMPVISMVLPLQAYAAENTASRELPDQAVKTYLKSYLDRLDRLDASSSSGRIEIDGQLQRFYKALDYRV
AWTNRKAIARLVELVGECESDGLNPSDYHYDQIKEFAANPPGSPALKAKADLLMTDALFSLMSHLRSGKVMPRALDSNWN
LPVPKPAANYDQMLMTAVMGSKFPEMISVLRNPSPEYVLLRKNLLRYRKIAENGGWQPVYQGPNIEKVGQVDKRMPLIRQ
RLILSGDLAADKLVAPADSSLSSAAPVPSDQVYTQELFDAVLAFQQSHGLSADGIIGLETLNAMNYPAELRADQIRVNLE
RERWYGGILGGTYVMVNIPAFSLKYVKDNEVRWKSRVIVGKPDTQTPIFAAQIQSVTFNPHWVIPPGILSKEAIPAIRKD
IGYLAKHQLTVVDSNGKPVDPSRVNWYSDGGFPYRLVQASGDDGSLGRIKFNMPNRFMVYMHDTPTKPLFERSMRAYSHG
CVRVDRPYELAEQLMRDSKNWSLSKIEAAINTGKTRTIPLTVKVPVYFFYQTAFADGNKIGFRNDIYDRDKKLLDALNSN
QWGRSVEEATR
>Mature_571_residues
MMVPFVLLWFALMPVISMVLPLQAYAAENTASRELPDQAVKTYLKSYLDRLDRLDASSSSGRIEIDGQLQRFYKALDYRV
AWTNRKAIARLVELVGECESDGLNPSDYHYDQIKEFAANPPGSPALKAKADLLMTDALFSLMSHLRSGKVMPRALDSNWN
LPVPKPAANYDQMLMTAVMGSKFPEMISVLRNPSPEYVLLRKNLLRYRKIAENGGWQPVYQGPNIEKVGQVDKRMPLIRQ
RLILSGDLAADKLVAPADSSLSSAAPVPSDQVYTQELFDAVLAFQQSHGLSADGIIGLETLNAMNYPAELRADQIRVNLE
RERWYGGILGGTYVMVNIPAFSLKYVKDNEVRWKSRVIVGKPDTQTPIFAAQIQSVTFNPHWVIPPGILSKEAIPAIRKD
IGYLAKHQLTVVDSNGKPVDPSRVNWYSDGGFPYRLVQASGDDGSLGRIKFNMPNRFMVYMHDTPTKPLFERSMRAYSHG
CVRVDRPYELAEQLMRDSKNWSLSKIEAAINTGKTRTIPLTVKVPVYFFYQTAFADGNKIGFRNDIYDRDKKLLDALNSN
QWGRSVEEATR

Specific function: Responsible, at least in part, for generating a meso- diaminopimelyl-3-a meso-diaminopimelyl-3 cross-link [H]

COG id: COG2989

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the YkuD family [H]

Homologues:

Organism=Escherichia coli, GI1787155, Length=539, Percent_Identity=31.3543599257885, Blast_Score=236, Evalue=4e-63,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002477
- InterPro:   IPR005490 [H]

Pfam domain/function: PF01471 PG_binding_1; PF03734 YkuD [H]

EC number: NA

Molecular weight: Translated: 64282; Mature: 64282

Theoretical pI: Translated: 9.48; Mature: 9.48

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMVPFVLLWFALMPVISMVLPLQAYAAENTASRELPDQAVKTYLKSYLDRLDRLDASSSS
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCC
GRIEIDGQLQRFYKALDYRVAWTNRKAIARLVELVGECESDGLNPSDYHYDQIKEFAANP
CEEEECHHHHHHHHHHCCEEEECCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCC
PGSPALKAKADLLMTDALFSLMSHLRSGKVMPRALDSNWNLPVPKPAANYDQMLMTAVMG
CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCCCCCCCCCCCHHHHHHHHHHC
SKFPEMISVLRNPSPEYVLLRKNLLRYRKIAENGGWQPVYQGPNIEKVGQVDKRMPLIRQ
CCCHHHHHHHHCCCCCEEHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHH
RLILSGDLAADKLVAPADSSLSSAAPVPSDQVYTQELFDAVLAFQQSHGLSADGIIGLET
HHHHCCCCCCCCEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEHHH
LNAMNYPAELRADQIRVNLERERWYGGILGGTYVMVNIPAFSLKYVKDNEVRWKSRVIVG
HHCCCCCHHHCCCEEEEEEEHHHHCCCEECCEEEEEECCCEEEEEECCCCEEEEEEEEEE
KPDTQTPIFAAQIQSVTFNPHWVIPPGILSKEAIPAIRKDIGYLAKHQLTVVDSNGKPVD
CCCCCCCEEEEEEEEEECCCCEECCCCCCCHHHHHHHHHHHHHHHHCEEEEECCCCCCCC
PSRVNWYSDGGFPYRLVQASGDDGSLGRIKFNMPNRFMVYMHDTPTKPLFERSMRAYSHG
CCCCEEECCCCCEEEEEEECCCCCCEEEEEECCCCEEEEEEECCCCCHHHHHHHHHHHCC
CVRVDRPYELAEQLMRDSKNWSLSKIEAAINTGKTRTIPLTVKVPVYFFYQTAFADGNKI
CEEECCCHHHHHHHHHCCCCCCHHHHHHHHHCCCEEEEEEEEEECEEEEEEHHHCCCCCC
GFRNDIYDRDKKLLDALNSNQWGRSVEEATR
CCCCCHHHHHHHHHHHHCCCCCCCCHHHHCC
>Mature Secondary Structure
MMVPFVLLWFALMPVISMVLPLQAYAAENTASRELPDQAVKTYLKSYLDRLDRLDASSSS
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCC
GRIEIDGQLQRFYKALDYRVAWTNRKAIARLVELVGECESDGLNPSDYHYDQIKEFAANP
CEEEECHHHHHHHHHHCCEEEECCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCC
PGSPALKAKADLLMTDALFSLMSHLRSGKVMPRALDSNWNLPVPKPAANYDQMLMTAVMG
CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCCCCCCCCCCCHHHHHHHHHHC
SKFPEMISVLRNPSPEYVLLRKNLLRYRKIAENGGWQPVYQGPNIEKVGQVDKRMPLIRQ
CCCHHHHHHHHCCCCCEEHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHH
RLILSGDLAADKLVAPADSSLSSAAPVPSDQVYTQELFDAVLAFQQSHGLSADGIIGLET
HHHHCCCCCCCCEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEHHH
LNAMNYPAELRADQIRVNLERERWYGGILGGTYVMVNIPAFSLKYVKDNEVRWKSRVIVG
HHCCCCCHHHCCCEEEEEEEHHHHCCCEECCEEEEEECCCEEEEEECCCCEEEEEEEEEE
KPDTQTPIFAAQIQSVTFNPHWVIPPGILSKEAIPAIRKDIGYLAKHQLTVVDSNGKPVD
CCCCCCCEEEEEEEEEECCCCEECCCCCCCHHHHHHHHHHHHHHHHCEEEEECCCCCCCC
PSRVNWYSDGGFPYRLVQASGDDGSLGRIKFNMPNRFMVYMHDTPTKPLFERSMRAYSHG
CCCCEEECCCCCEEEEEEECCCCCCEEEEEECCCCEEEEEEECCCCCHHHHHHHHHHHCC
CVRVDRPYELAEQLMRDSKNWSLSKIEAAINTGKTRTIPLTVKVPVYFFYQTAFADGNKI
CEEECCCHHHHHHHHHCCCCCCHHHHHHHHHCCCEEEEEEEEEECEEEEEEHHHCCCCCC
GFRNDIYDRDKKLLDALNSNQWGRSVEEATR
CCCCCHHHHHHHHHHHHCCCCCCCCHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503; 1989883 [H]