| Definition | Chlorobium tepidum TLS, complete genome. |
|---|---|
| Accession | NC_002932 |
| Length | 2,154,946 |
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The map label for this gene is 21674220
Identifier: 21674220
GI number: 21674220
Start: 1312677
End: 1313645
Strand: Reverse
Name: 21674220
Synonym: CT1399
Alternate gene names: NA
Gene position: 1313645-1312677 (Counterclockwise)
Preceding gene: 21674221
Following gene: 21674217
Centisome position: 60.96
GC content: 45.3
Gene sequence:
>969_bases ATGGCCGTTTACTCTTTTCTTGACCTTGCCTATGATGTTCTCAAAGTGGCAACCCAGCCTTTGACTTATCAGGAGGTTTG GCAGGCCGGAAAGGAGAATGGCCTTACAGACAAAATCAAGACATCAGGTAAGACTCCGTGGCAGAGTCTTGGGGCGCAAC TGTATGTTGAAGTTCGAGACAACGAAGACTCCCGATTCATGAAAGTCGGGAAAAGACCTGCCCGCTTTTTTCTCAAAGAT CGGGCGGCTGAATTAGCATCGGATGCAGTTGCCAAGATTGAGAAAGAGGAATCTAAGAAGAAGGAAAAGAAGACAGCGTA TCACGAACGTGATATTCATCCACTGCTTACTTACTTCGCTTATGCAAATCCGAGTTTTAACCGTGGGCGCTCGATCTTTA CAAAGACCATCTTTCATGAAAGATCGCAGAGATCCGGTTACAATGAGTGGATTCATCCAGATATTGTTGGATTCTATCTG CCTTTGGACGACTGGCGTCCTGATGTAATTGAATTCAACCGCCTTTCTGACAACAACTCTCTGAAGCTTTTCTCGTTTGA GGTGAAAAAGAGCCTTACGAAGGCTAACTACAGAGAGGCATACTTCCAGGCTGTATCTAACTCGTCGTGGGCACATGAAG GCTATCTTGTCGCTGCTGAGATACTCCAAGATGATGAGTTTCTCGCTGAACTTGAACGACTTGCTTCATCGTTCGGAATC GGCATCATTCATCTTGATCCGATAGACATCGACAGCTCCAGTATCCTCTATCCAGCAAGGGTTCGGGATATTCTTGACTG GGAAACGATAAACAAGCTCTGCGAACAAAACACGGATTTCGAGAAATTTCTTCAGGACGTGAAAATAGACTTCGAGTCCA AACGGATTCACCGGGCAGAGTTTGATGAGATCGTCAAAGACATTCGAAAGTATATCAGAGAGAAACTGAAGATTGAACCA GAGGCTTGA
Upstream 100 bases:
>100_bases GAAATGGAGTTTAAAATCGATATAAAATGGTGTTTTGGCTTACCTGTTTTTGATCGATATATTTTTTGCACAACGATAAG CTTAACGATGGAGGCGAGAT
Downstream 100 bases:
>100_bases CCGTATGCTGTAACCCGCACTGAAAGATTCGGCATGAGCTTTCAGCGCGATTTACTTTCATTTCTACCCGCTAATTCTCC CAAACAACTCATACGCCGTT
Product: hypothetical protein
Products: NA
Alternate protein names: Excinuclease ATPase Subunit
Number of amino acids: Translated: 322; Mature: 321
Protein sequence:
>322_residues MAVYSFLDLAYDVLKVATQPLTYQEVWQAGKENGLTDKIKTSGKTPWQSLGAQLYVEVRDNEDSRFMKVGKRPARFFLKD RAAELASDAVAKIEKEESKKKEKKTAYHERDIHPLLTYFAYANPSFNRGRSIFTKTIFHERSQRSGYNEWIHPDIVGFYL PLDDWRPDVIEFNRLSDNNSLKLFSFEVKKSLTKANYREAYFQAVSNSSWAHEGYLVAAEILQDDEFLAELERLASSFGI GIIHLDPIDIDSSSILYPARVRDILDWETINKLCEQNTDFEKFLQDVKIDFESKRIHRAEFDEIVKDIRKYIREKLKIEP EA
Sequences:
>Translated_322_residues MAVYSFLDLAYDVLKVATQPLTYQEVWQAGKENGLTDKIKTSGKTPWQSLGAQLYVEVRDNEDSRFMKVGKRPARFFLKD RAAELASDAVAKIEKEESKKKEKKTAYHERDIHPLLTYFAYANPSFNRGRSIFTKTIFHERSQRSGYNEWIHPDIVGFYL PLDDWRPDVIEFNRLSDNNSLKLFSFEVKKSLTKANYREAYFQAVSNSSWAHEGYLVAAEILQDDEFLAELERLASSFGI GIIHLDPIDIDSSSILYPARVRDILDWETINKLCEQNTDFEKFLQDVKIDFESKRIHRAEFDEIVKDIRKYIREKLKIEP EA >Mature_321_residues AVYSFLDLAYDVLKVATQPLTYQEVWQAGKENGLTDKIKTSGKTPWQSLGAQLYVEVRDNEDSRFMKVGKRPARFFLKDR AAELASDAVAKIEKEESKKKEKKTAYHERDIHPLLTYFAYANPSFNRGRSIFTKTIFHERSQRSGYNEWIHPDIVGFYLP LDDWRPDVIEFNRLSDNNSLKLFSFEVKKSLTKANYREAYFQAVSNSSWAHEGYLVAAEILQDDEFLAELERLASSFGIG IIHLDPIDIDSSSILYPARVRDILDWETINKLCEQNTDFEKFLQDVKIDFESKRIHRAEFDEIVKDIRKYIREKLKIEPE A
Specific function: Unknown
COG id: COG2958
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 37573; Mature: 37442
Theoretical pI: Translated: 5.97; Mature: 5.97
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 0.6 %Met (Translated Protein) 0.9 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 0.3 %Met (Mature Protein) 0.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAVYSFLDLAYDVLKVATQPLTYQEVWQAGKENGLTDKIKTSGKTPWQSLGAQLYVEVRD CHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHCCCCCCHHHCCCEEEEEEEC NEDSRFMKVGKRPARFFLKDRAAELASDAVAKIEKEESKKKEKKTAYHERDIHPLLTYFA CCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH YANPSFNRGRSIFTKTIFHERSQRSGYNEWIHPDIVGFYLPLDDWRPDVIEFNRLSDNNS HCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCCEEEEECCCCCC LKLFSFEVKKSLTKANYREAYFQAVSNSSWAHEGYLVAAEILQDDEFLAELERLASSFGI EEEEEHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEHHHHHCCHHHHHHHHHHHHHHCE GIIHLDPIDIDSSSILYPARVRDILDWETINKLCEQNTDFEKFLQDVKIDFESKRIHRAE EEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHH FDEIVKDIRKYIREKLKIEPEA HHHHHHHHHHHHHHHHCCCCCC >Mature Secondary Structure AVYSFLDLAYDVLKVATQPLTYQEVWQAGKENGLTDKIKTSGKTPWQSLGAQLYVEVRD HHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHCCCCCCHHHCCCEEEEEEEC NEDSRFMKVGKRPARFFLKDRAAELASDAVAKIEKEESKKKEKKTAYHERDIHPLLTYFA CCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH YANPSFNRGRSIFTKTIFHERSQRSGYNEWIHPDIVGFYLPLDDWRPDVIEFNRLSDNNS HCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCCEEEEECCCCCC LKLFSFEVKKSLTKANYREAYFQAVSNSSWAHEGYLVAAEILQDDEFLAELERLASSFGI EEEEEHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEHHHHHCCHHHHHHHHHHHHHHCE GIIHLDPIDIDSSSILYPARVRDILDWETINKLCEQNTDFEKFLQDVKIDFESKRIHRAE EEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHH FDEIVKDIRKYIREKLKIEPEA HHHHHHHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA