| Definition | Chlorobium tepidum TLS, complete genome. |
|---|---|
| Accession | NC_002932 |
| Length | 2,154,946 |
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The map label for this gene is prc [H]
Identifier: 21673880
GI number: 21673880
Start: 990650
End: 992677
Strand: Direct
Name: prc [H]
Synonym: CT1054
Alternate gene names: 21673880
Gene position: 990650-992677 (Clockwise)
Preceding gene: 21673878
Following gene: 21673883
Centisome position: 45.97
GC content: 54.93
Gene sequence:
>2028_bases ATGGCTGCCGTTGGTCAAGCTGCTCAACCAGCCCTCCTCAAACCAACTCCGAACCAGGAGGAGGCCGCCCGTTACATCGC CCAGTACCTGCTTCAGAACCATTACCGCAAGGTGCCGGTCAACGACTCGCTCTCCCAGCAGATTTTCAAACGCTACCTCG ACAATCTCGACAACAACCGCAGTTACTTCACAGCGCCCGAGGTCGAAAAGCTCCGCCAGGAGTTCGGGGCTCACCTCGCT GACGATTTCGTCTCCGGCAATCCCGCCGACGGTTTCGCCATCTACAACCAGTTCCTGAAACGGGCCAGAGAGAAGATGGC GTATATGAAAAACGCGCTCGAAAAGACCACATTCAACTTTTCCTCCCCCGAAACGCTCGAACTGGAACGAAGCAAAACCG CTCCCTGGCCAGCCAACGAGGCTGAGCTTCACGATCTGTGGCGCAAGGAGCTGAAGTATCAGTACCTGAGCGCCAAATAT TCCGGCGAAAAGGGCAAAAACATCAAGTCTGAAGTCATGAAGACCCTTGACAACAGACTCAAAATCTTCAACCAGCAGAA GCCCGAAGATGCTTTCCAGGCTTATATGTATGCCGTGACCACCTCGTTCGATCCGCATACCGACTACTTCTCGCCGGATG AATACGAGAACTTCCAGATCGACATGAGCCGCTCGCTCGAAGGAATCGGCGCGAAGTTGCAGATGGAGAACGAATACACG GTGGTGAACGAGATTATTCCCGGCGGCCCGGCCTTCAAAAGCAAACTTCTGAAGAAGGGCGACAAGATTGTCGGTGTTGG ACAGGGCGACAAGGGAGAGATCATCGACGTGATCGGCTGGCGCATCAATGACGTGGTCAAAAAGATCAGAGGTCCCAAAG GCACCGTTGTCAGGCTCAAGGTGCTTCCGGCCAGCCAGGCTGGCAAGGGGCCTGCAAAGATTATCCGGCTGGTGCGGGCC AAGGTTGACTTGCAGGAGCAGGCCGCGCAGAAAAAGATCATTTATGACAACGGTCACAAAATTGGCGTTATCGTGCTTCC GTCGTTCTATCTCGATTTCGAAGGCGAACGGCAGCAAAAGCATAACTACGCGAGTACTACAAAGGATGTGGCCAGAATCA TCAACGAGCTGAAGCAGGAGAATGTGGAGGGAATCATCGTTGATCTGAGGGAAAACGGTGGTGGATCGCTCGAAGAGGCC GTCAATGTCACCGGCCTGTTCACCGGCAGGGGGCCTGTCGTGCAGGTCAGCAACGCTCTCGGCGGCAAGATGGTGCTGAA TGACGAAAATTACCCGATGCTTTACCGGGGGCCGCTGGTGGTGCTGGTCAACCGCTACAGCGCGTCGGCCTCGGAGATTT TCGCCGCGGCGATCCAGGATTACGGGCGAGGACTCATCGTTGGAGACAGAACCTTCGGCAAGGGTACCGTGCAGAGCATC GTCACCATCCAGAGACCATTCAGCATGTTCATGAAACAGGCTGACCTCGGCCAGCTCAAGTTGACCATCGCCAAGTTCTA CCGCATCTCCGGCGGTAGTACCCAGCATATCGGTGTTCTGCCGGATATCGTTCTTCCGTCCCTGATCGACCCGGAGGTGG TGGGTGAAGATACCTACACCAGCAGTCTGCCCTGGACAACCATCTCAAGGGCTGCTTATACACCATTAGGATTCGTCACC AAAGAGGATATTGTTTTACTGAAGAAGGAGTTCGCCGAACAGTCCGCCAAAGACAAGCTCTACCAGTCCTATCTGGCCGA TTTGGCAACCCTGAACCGTATCAGGCAGAAGAAGAGCGTGTCACTCCAGGAAAAAGGCTTTCAAGTGGAGAACAAGACCC TGAAAGAGATACAGGATCGCTGGGGAGACCAGAATGCCGATACCGGGAAAAAGAAGAAAACGGATTTCATTCTGCAGGAG GCTGCCAGAATTCTCGATGATCTCGTGGCGCTCAAGTCGCGTCCGGCAGTTCCCGCCGCGGCTCCGTTGGCAAGGCCTGC CGTCAGGCGGGCGGTGCCCGTGAAATAA
Upstream 100 bases:
>100_bases TTCACAAAAGCTTCACAGTCAGTTTATGAAAAAGATACGCAAGACCCTCTCTCCGATTCTGTTTTTTCTCCTGATGCTCA CCCTTTCGTGGGATCAGTCC
Downstream 100 bases:
>100_bases GCGGGCAGCAACATTCCAATAAAAAAGGCGCTCGGTGATGGAGCGCCTTTTTTGGTTCCGGGTTTGCCGAAACAGGGCGG GCATAAAACCCGTCCCTACA
Product: carboxyl-terminal protease
Products: NA
Alternate protein names: C-terminal-processing peptidase; PRC protein; Protease Re [H]
Number of amino acids: Translated: 675; Mature: 674
Protein sequence:
>675_residues MAAVGQAAQPALLKPTPNQEEAARYIAQYLLQNHYRKVPVNDSLSQQIFKRYLDNLDNNRSYFTAPEVEKLRQEFGAHLA DDFVSGNPADGFAIYNQFLKRAREKMAYMKNALEKTTFNFSSPETLELERSKTAPWPANEAELHDLWRKELKYQYLSAKY SGEKGKNIKSEVMKTLDNRLKIFNQQKPEDAFQAYMYAVTTSFDPHTDYFSPDEYENFQIDMSRSLEGIGAKLQMENEYT VVNEIIPGGPAFKSKLLKKGDKIVGVGQGDKGEIIDVIGWRINDVVKKIRGPKGTVVRLKVLPASQAGKGPAKIIRLVRA KVDLQEQAAQKKIIYDNGHKIGVIVLPSFYLDFEGERQQKHNYASTTKDVARIINELKQENVEGIIVDLRENGGGSLEEA VNVTGLFTGRGPVVQVSNALGGKMVLNDENYPMLYRGPLVVLVNRYSASASEIFAAAIQDYGRGLIVGDRTFGKGTVQSI VTIQRPFSMFMKQADLGQLKLTIAKFYRISGGSTQHIGVLPDIVLPSLIDPEVVGEDTYTSSLPWTTISRAAYTPLGFVT KEDIVLLKKEFAEQSAKDKLYQSYLADLATLNRIRQKKSVSLQEKGFQVENKTLKEIQDRWGDQNADTGKKKKTDFILQE AARILDDLVALKSRPAVPAAAPLARPAVRRAVPVK
Sequences:
>Translated_675_residues MAAVGQAAQPALLKPTPNQEEAARYIAQYLLQNHYRKVPVNDSLSQQIFKRYLDNLDNNRSYFTAPEVEKLRQEFGAHLA DDFVSGNPADGFAIYNQFLKRAREKMAYMKNALEKTTFNFSSPETLELERSKTAPWPANEAELHDLWRKELKYQYLSAKY SGEKGKNIKSEVMKTLDNRLKIFNQQKPEDAFQAYMYAVTTSFDPHTDYFSPDEYENFQIDMSRSLEGIGAKLQMENEYT VVNEIIPGGPAFKSKLLKKGDKIVGVGQGDKGEIIDVIGWRINDVVKKIRGPKGTVVRLKVLPASQAGKGPAKIIRLVRA KVDLQEQAAQKKIIYDNGHKIGVIVLPSFYLDFEGERQQKHNYASTTKDVARIINELKQENVEGIIVDLRENGGGSLEEA VNVTGLFTGRGPVVQVSNALGGKMVLNDENYPMLYRGPLVVLVNRYSASASEIFAAAIQDYGRGLIVGDRTFGKGTVQSI VTIQRPFSMFMKQADLGQLKLTIAKFYRISGGSTQHIGVLPDIVLPSLIDPEVVGEDTYTSSLPWTTISRAAYTPLGFVT KEDIVLLKKEFAEQSAKDKLYQSYLADLATLNRIRQKKSVSLQEKGFQVENKTLKEIQDRWGDQNADTGKKKKTDFILQE AARILDDLVALKSRPAVPAAAPLARPAVRRAVPVK >Mature_674_residues AAVGQAAQPALLKPTPNQEEAARYIAQYLLQNHYRKVPVNDSLSQQIFKRYLDNLDNNRSYFTAPEVEKLRQEFGAHLAD DFVSGNPADGFAIYNQFLKRAREKMAYMKNALEKTTFNFSSPETLELERSKTAPWPANEAELHDLWRKELKYQYLSAKYS GEKGKNIKSEVMKTLDNRLKIFNQQKPEDAFQAYMYAVTTSFDPHTDYFSPDEYENFQIDMSRSLEGIGAKLQMENEYTV VNEIIPGGPAFKSKLLKKGDKIVGVGQGDKGEIIDVIGWRINDVVKKIRGPKGTVVRLKVLPASQAGKGPAKIIRLVRAK VDLQEQAAQKKIIYDNGHKIGVIVLPSFYLDFEGERQQKHNYASTTKDVARIINELKQENVEGIIVDLRENGGGSLEEAV NVTGLFTGRGPVVQVSNALGGKMVLNDENYPMLYRGPLVVLVNRYSASASEIFAAAIQDYGRGLIVGDRTFGKGTVQSIV TIQRPFSMFMKQADLGQLKLTIAKFYRISGGSTQHIGVLPDIVLPSLIDPEVVGEDTYTSSLPWTTISRAAYTPLGFVTK EDIVLLKKEFAEQSAKDKLYQSYLADLATLNRIRQKKSVSLQEKGFQVENKTLKEIQDRWGDQNADTGKKKKTDFILQEA ARILDDLVALKSRPAVPAAAPLARPAVRRAVPVK
Specific function: Involved in the cleavage of a C-terminal peptide of 11 residues from the precursor form of penicillin-binding protein 3 (PBP3). May be involved in protection of the bacterium from thermal and osmotic stresses [H]
COG id: COG0793
COG function: function code M; Periplasmic protease
Gene ontology:
Cell location: Cell inner membrane; Peripheral membrane protein; Periplasmic side [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 PDZ (DHR) domain [H]
Homologues:
Organism=Escherichia coli, GI1788134, Length=670, Percent_Identity=38.5074626865672, Blast_Score=432, Evalue=1e-122,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001478 - InterPro: IPR005151 - InterPro: IPR004447 - InterPro: IPR020992 [H]
Pfam domain/function: PF11818 DUF3340; PF00595 PDZ; PF03572 Peptidase_S41 [H]
EC number: =3.4.21.102 [H]
Molecular weight: Translated: 75484; Mature: 75353
Theoretical pI: Translated: 9.70; Mature: 9.70
Prosite motif: PS50106 PDZ
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAAVGQAAQPALLKPTPNQEEAARYIAQYLLQNHYRKVPVNDSLSQQIFKRYLDNLDNNR CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCEECCCCCHHHHHHHHHHHHCCCCCC SYFTAPEVEKLRQEFGAHLADDFVSGNPADGFAIYNQFLKRAREKMAYMKNALEKTTFNF CEECCHHHHHHHHHHCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC SSPETLELERSKTAPWPANEAELHDLWRKELKYQYLSAKYSGEKGKNIKSEVMKTLDNRL CCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH KIFNQQKPEDAFQAYMYAVTTSFDPHTDYFSPDEYENFQIDMSRSLEGIGAKLQMENEYT HHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEHHHCCCCCCCEEEECCCEE VVNEIIPGGPAFKSKLLKKGDKIVGVGQGDKGEIIDVIGWRINDVVKKIRGPKGTVVRLK EHHHHCCCCHHHHHHHHHCCCCEEEECCCCCCCEEHHHCCHHHHHHHHHCCCCCCEEEEE VLPASQAGKGPAKIIRLVRAKVDLQEQAAQKKIIYDNGHKIGVIVLPSFYLDFEGERQQK EECCCCCCCCHHHHHHHHHHHCCHHHHHHCCCEEEECCCEEEEEEECCEEECCCCCHHHH HNYASTTKDVARIINELKQENVEGIIVDLRENGGGSLEEAVNVTGLFTGRGPVVQVSNAL HHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHCCEEEEEECCCCEEEECCCC GGKMVLNDENYPMLYRGPLVVLVNRYSASASEIFAAAIQDYGRGLIVGDRTFGKGTVQSI CCEEEECCCCCCEEEECCEEEEEECCCCCHHHHHHHHHHHHCCEEEEECCCCCCHHHHHH VTIQRPFSMFMKQADLGQLKLTIAKFYRISGGSTQHIGVLPDIVLPSLIDPEVVGEDTYT HHHHHHHHHHHHHCCCCHHHHHHHHHHEECCCCCCCCCCCHHHHCCCCCCCCCCCCCCCC SSLPWTTISRAAYTPLGFVTKEDIVLLKKEFAEQSAKDKLYQSYLADLATLNRIRQKKSV CCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC SLQEKGFQVENKTLKEIQDRWGDQNADTGKKKKTDFILQEAARILDDLVALKSRPAVPAA CHHHCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC APLARPAVRRAVPVK CHHHHHHHHHCCCCC >Mature Secondary Structure AAVGQAAQPALLKPTPNQEEAARYIAQYLLQNHYRKVPVNDSLSQQIFKRYLDNLDNNR CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCEECCCCCHHHHHHHHHHHHCCCCCC SYFTAPEVEKLRQEFGAHLADDFVSGNPADGFAIYNQFLKRAREKMAYMKNALEKTTFNF CEECCHHHHHHHHHHCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC SSPETLELERSKTAPWPANEAELHDLWRKELKYQYLSAKYSGEKGKNIKSEVMKTLDNRL CCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH KIFNQQKPEDAFQAYMYAVTTSFDPHTDYFSPDEYENFQIDMSRSLEGIGAKLQMENEYT HHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEHHHCCCCCCCEEEECCCEE VVNEIIPGGPAFKSKLLKKGDKIVGVGQGDKGEIIDVIGWRINDVVKKIRGPKGTVVRLK EHHHHCCCCHHHHHHHHHCCCCEEEECCCCCCCEEHHHCCHHHHHHHHHCCCCCCEEEEE VLPASQAGKGPAKIIRLVRAKVDLQEQAAQKKIIYDNGHKIGVIVLPSFYLDFEGERQQK EECCCCCCCCHHHHHHHHHHHCCHHHHHHCCCEEEECCCEEEEEEECCEEECCCCCHHHH HNYASTTKDVARIINELKQENVEGIIVDLRENGGGSLEEAVNVTGLFTGRGPVVQVSNAL HHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHCCEEEEEECCCCEEEECCCC GGKMVLNDENYPMLYRGPLVVLVNRYSASASEIFAAAIQDYGRGLIVGDRTFGKGTVQSI CCEEEECCCCCCEEEECCEEEEEECCCCCHHHHHHHHHHHHCCEEEEECCCCCCHHHHHH VTIQRPFSMFMKQADLGQLKLTIAKFYRISGGSTQHIGVLPDIVLPSLIDPEVVGEDTYT HHHHHHHHHHHHHCCCCHHHHHHHHHHEECCCCCCCCCCCHHHHCCCCCCCCCCCCCCCC SSLPWTTISRAAYTPLGFVTKEDIVLLKKEFAEQSAKDKLYQSYLADLATLNRIRQKKSV CCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC SLQEKGFQVENKTLKEIQDRWGDQNADTGKKKKTDFILQEAARILDDLVALKSRPAVPAA CHHHCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC APLARPAVRRAVPVK CHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 1856173; 1729701; 9097040; 9278503; 1447154; 10049386; 7499412; 8576225 [H]