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The map label for this gene is apl [H]

Identifier: 21673789

GI number: 21673789

Start: 907301

End: 907969

Strand: Direct

Name: apl [H]

Synonym: CT0961

Alternate gene names: 21673789

Gene position: 907301-907969 (Clockwise)

Preceding gene: 21673788

Following gene: 21673791

Centisome position: 42.1

GC content: 51.57

Gene sequence:

>669_bases
ATGCCGGAAACCTCTTCAATGCTTGAATCCGTTGTTGCCTACCTGCAACAGGCCGAACCTTCTTCGGTCTATGCAGTATT
GTTTCTGTCGGCATATTTTGAGAATGTCATTCCCCCGATTCCGGGGGATGTTCCCATAGCCCTTGCCGGATACCTTCTCA
CCTTCAGCCATATCACCTTTGTCGCTGCGCTGTTCTGGTCAACGATCGGTTCGGTAGCCGGATTCATGACTGTGTTTCTG
CTCAGCCGCTTTCTGGGTCTCAAGCTCTACGCTGTCGGAGAGTGCGAGGCGCGTCACAAATTCGCCCAAAGCATTCACAA
GCTGTTCCCTCCCTCTGAAATGGAGGTCGTGCGCCAGAAGTTTTCAGGGCATGGCTATCTGGCCGTCGTGGTCAATCGTT
TCCTTTTCGGGTCGCGGGCGGTTATCTGCATCGTGGCCGGCATGTTACATCTGAAAATACCGCTGGTGCTTGCTGCCTCT
TTTGTCAGCTCGCTGCTCTGGAATATTCTTTTATTGAGCACTGGCTATCTGCTCGGCAGCAACTGGGACAAGATTGGTCA
ATACGCGGTACTGTACACTGCGCCGTTCACGATTCTGTTTACAGGTTTTATTGTCTGGAAGGTCGTGGCCTATCTCAAAA
AAAGAAAACAGCAAGCTGACGGAGCATGA

Upstream 100 bases:

>100_bases
GGTGAGAAGCTTGACAAGGATCGTTTCCGCCTCGACCTTGGCGGCGTTGAGGATGCATACTCCGAGGTCAAGCGCCGCGT
GCTGGAACAGTAAGCCATCG

Downstream 100 bases:

>100_bases
CTTGGTAAATTAGGCGTCCGCTTTTAACTTTGAGGTTTTCTGACGGGCGGTTTCCGGCGTTCTTCTGACACCATTTTTTA
TTTTCAGCCATCATTCATCC

Product: DedA family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 222; Mature: 221

Protein sequence:

>222_residues
MPETSSMLESVVAYLQQAEPSSVYAVLFLSAYFENVIPPIPGDVPIALAGYLLTFSHITFVAALFWSTIGSVAGFMTVFL
LSRFLGLKLYAVGECEARHKFAQSIHKLFPPSEMEVVRQKFSGHGYLAVVVNRFLFGSRAVICIVAGMLHLKIPLVLAAS
FVSSLLWNILLLSTGYLLGSNWDKIGQYAVLYTAPFTILFTGFIVWKVVAYLKKRKQQADGA

Sequences:

>Translated_222_residues
MPETSSMLESVVAYLQQAEPSSVYAVLFLSAYFENVIPPIPGDVPIALAGYLLTFSHITFVAALFWSTIGSVAGFMTVFL
LSRFLGLKLYAVGECEARHKFAQSIHKLFPPSEMEVVRQKFSGHGYLAVVVNRFLFGSRAVICIVAGMLHLKIPLVLAAS
FVSSLLWNILLLSTGYLLGSNWDKIGQYAVLYTAPFTILFTGFIVWKVVAYLKKRKQQADGA
>Mature_221_residues
PETSSMLESVVAYLQQAEPSSVYAVLFLSAYFENVIPPIPGDVPIALAGYLLTFSHITFVAALFWSTIGSVAGFMTVFLL
SRFLGLKLYAVGECEARHKFAQSIHKLFPPSEMEVVRQKFSGHGYLAVVVNRFLFGSRAVICIVAGMLHLKIPLVLAASF
VSSLLWNILLLSTGYLLGSNWDKIGQYAVLYTAPFTILFTGFIVWKVVAYLKKRKQQADGA

Specific function: Unknown

COG id: COG0586

COG function: function code S; Uncharacterized membrane-associated protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the dedA family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015414 [H]

Pfam domain/function: PF09335 SNARE_assoc [H]

EC number: NA

Molecular weight: Translated: 24496; Mature: 24365

Theoretical pI: Translated: 9.46; Mature: 9.46

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPETSSMLESVVAYLQQAEPSSVYAVLFLSAYFENVIPPIPGDVPIALAGYLLTFSHITF
CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHH
VAALFWSTIGSVAGFMTVFLLSRFLGLKLYAVGECEARHKFAQSIHKLFPPSEMEVVRQK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCHHHHHHHHHHHHHHCCCHHHHHHHHH
FSGHGYLAVVVNRFLFGSRAVICIVAGMLHLKIPLVLAASFVSSLLWNILLLSTGYLLGS
HCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
NWDKIGQYAVLYTAPFTILFTGFIVWKVVAYLKKRKQQADGA
CHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
PETSSMLESVVAYLQQAEPSSVYAVLFLSAYFENVIPPIPGDVPIALAGYLLTFSHITF
CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHH
VAALFWSTIGSVAGFMTVFLLSRFLGLKLYAVGECEARHKFAQSIHKLFPPSEMEVVRQK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCHHHHHHHHHHHHHHCCCHHHHHHHHH
FSGHGYLAVVVNRFLFGSRAVICIVAGMLHLKIPLVLAASFVSSLLWNILLLSTGYLLGS
HCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
NWDKIGQYAVLYTAPFTILFTGFIVWKVVAYLKKRKQQADGA
CHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11337471 [H]