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The map label for this gene is vpsC

Identifier: 21673164

GI number: 21673164

Start: 342146

End: 343024

Strand: Reverse

Name: vpsC

Synonym: CT0325

Alternate gene names: NA

Gene position: 343024-342146 (Counterclockwise)

Preceding gene: 21673165

Following gene: 21673163

Centisome position: 15.92

GC content: 54.27

Gene sequence:

>879_bases
ATGAGAAATCTGAAAGAACTGAAATGGAGCGACCTGAAAACCGGCATTTTTTTCCTGCTTGGACTCGGGTTTGCGGCCTA
TCTCGGCCTGGTAATTGGTAAAAACACCAGCATTTTCACCGGCGTAACCACCATCAAGGTCATGACCCGGGATGTCAACG
GTCTCGCGGAAAACAACTTCGTGTCGGTCGCCGGCAAAAAAATCGGCACGGTCTCGAAACTCGACTTCAGCACTCAGAAC
GACTCGCTGTTCGTGGTAGCTGAACTGAAGTTGCAGAACGAGTATGCAAACCTCGTCACCAAAGACTCGAAGGCCTCAAT
TCGCTCTCTCGGCGTGCTGGGCGACAAATATGTAGACATCAAGGCGGGAACCGGAAAGCCGGTCAAGGAGGGTGATTTCA
TCCAGCTCGTGCCCGAAGACGGACTTTCCGCATTGACCGACAATGCCAAGAGCACCATCGAAAAGCTCAACACGCTGCTC
GACAAGCTCAACAACGGCGACGGCCCTGCCGGACGGCTCATTTCGGACAAGCAGATGGGCGAAGACCTGCAGAAAACCGT
GATGAACCTGCGCAAAAGTTCAGACGAGCTGACCAGAGTCAGTGCGGAACTTCACAACGGCAAAGGGCTGCTGCCGAAGC
TGATCAACGACAAGTCGCTGGCCGACAACACCGAGCAGACCATTGTGAACCTGAAAAACGCCGCCGCCGAAACCGAGACA
CTGATGAAGCAGCTCAACGAAGGGAAGGGCACGCTCGGCAAGCTCAACAGCGATCCGGCGCTTTACAACAACCTGAGCAA
GACGCTGATCTCGCTCGACACCCTGCTTATCGATCTGAAAAAGAGGCCAAACCGGTACGTGCGCTTCACGCTCTTCTGA

Upstream 100 bases:

>100_bases
CCGACCGGACAGCTGCACGATTCGCAGCATCCATTCATCAAGTCGATCCTGTCGGATAAAATCCTCGAACTTTAATTTTT
TTCAAGACCCCTGCGATAGC

Downstream 100 bases:

>100_bases
CCGCATCCCGAACGCTTATGCGCCTGCTCCGGAAACTCACCGCCGCCCTCGCTTGTGCGGTCATTCTGCTGATGGCCGCC
GCATTTCCGGCAAACGCAGG

Product: VpsC protein

Products: NA

Alternate protein names: Mammalian Cell Entry Related Domain-Containing Protein; VpsC Protein; Mce Family Protein; Mce-Related Protein; Virulence Factor MCE-Like Protein-Related Protein; Virulence Factor Mce Family Protein

Number of amino acids: Translated: 292; Mature: 292

Protein sequence:

>292_residues
MRNLKELKWSDLKTGIFFLLGLGFAAYLGLVIGKNTSIFTGVTTIKVMTRDVNGLAENNFVSVAGKKIGTVSKLDFSTQN
DSLFVVAELKLQNEYANLVTKDSKASIRSLGVLGDKYVDIKAGTGKPVKEGDFIQLVPEDGLSALTDNAKSTIEKLNTLL
DKLNNGDGPAGRLISDKQMGEDLQKTVMNLRKSSDELTRVSAELHNGKGLLPKLINDKSLADNTEQTIVNLKNAAAETET
LMKQLNEGKGTLGKLNSDPALYNNLSKTLISLDTLLIDLKKRPNRYVRFTLF

Sequences:

>Translated_292_residues
MRNLKELKWSDLKTGIFFLLGLGFAAYLGLVIGKNTSIFTGVTTIKVMTRDVNGLAENNFVSVAGKKIGTVSKLDFSTQN
DSLFVVAELKLQNEYANLVTKDSKASIRSLGVLGDKYVDIKAGTGKPVKEGDFIQLVPEDGLSALTDNAKSTIEKLNTLL
DKLNNGDGPAGRLISDKQMGEDLQKTVMNLRKSSDELTRVSAELHNGKGLLPKLINDKSLADNTEQTIVNLKNAAAETET
LMKQLNEGKGTLGKLNSDPALYNNLSKTLISLDTLLIDLKKRPNRYVRFTLF
>Mature_292_residues
MRNLKELKWSDLKTGIFFLLGLGFAAYLGLVIGKNTSIFTGVTTIKVMTRDVNGLAENNFVSVAGKKIGTVSKLDFSTQN
DSLFVVAELKLQNEYANLVTKDSKASIRSLGVLGDKYVDIKAGTGKPVKEGDFIQLVPEDGLSALTDNAKSTIEKLNTLL
DKLNNGDGPAGRLISDKQMGEDLQKTVMNLRKSSDELTRVSAELHNGKGLLPKLINDKSLADNTEQTIVNLKNAAAETET
LMKQLNEGKGTLGKLNSDPALYNNLSKTLISLDTLLIDLKKRPNRYVRFTLF

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 31896; Mature: 31896

Theoretical pI: Translated: 9.86; Mature: 9.86

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRNLKELKWSDLKTGIFFLLGLGFAAYLGLVIGKNTSIFTGVTTIKVMTRDVNGLAENNF
CCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEHHEEEEEEEHHHCCCCCCCE
VSVAGKKIGTVSKLDFSTQNDSLFVVAELKLQNEYANLVTKDSKASIRSLGVLGDKYVDI
EEECCCCCCCEEEEECCCCCCCEEEEEEEEECHHHHHHHCCCCHHHHHHHHCCCCCEEEE
KAGTGKPVKEGDFIQLVPEDGLSALTDNAKSTIEKLNTLLDKLNNGDGPAGRLISDKQMG
ECCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHH
EDLQKTVMNLRKSSDELTRVSAELHNGKGLLPKLINDKSLADNTEQTIVNLKNAAAETET
HHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHH
LMKQLNEGKGTLGKLNSDPALYNNLSKTLISLDTLLIDLKKRPNRYVRFTLF
HHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEC
>Mature Secondary Structure
MRNLKELKWSDLKTGIFFLLGLGFAAYLGLVIGKNTSIFTGVTTIKVMTRDVNGLAENNF
CCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEHHEEEEEEEHHHCCCCCCCE
VSVAGKKIGTVSKLDFSTQNDSLFVVAELKLQNEYANLVTKDSKASIRSLGVLGDKYVDI
EEECCCCCCCEEEEECCCCCCCEEEEEEEEECHHHHHHHCCCCHHHHHHHHCCCCCEEEE
KAGTGKPVKEGDFIQLVPEDGLSALTDNAKSTIEKLNTLLDKLNNGDGPAGRLISDKQMG
ECCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHH
EDLQKTVMNLRKSSDELTRVSAELHNGKGLLPKLINDKSLADNTEQTIVNLKNAAAETET
HHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHH
LMKQLNEGKGTLGKLNSDPALYNNLSKTLISLDTLLIDLKKRPNRYVRFTLF
HHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA