| Definition | Chlorobium tepidum TLS, complete genome. |
|---|---|
| Accession | NC_002932 |
| Length | 2,154,946 |
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The map label for this gene is gltX [H]
Identifier: 21673138
GI number: 21673138
Start: 310224
End: 311735
Strand: Direct
Name: gltX [H]
Synonym: CT0299
Alternate gene names: 21673138
Gene position: 310224-311735 (Clockwise)
Preceding gene: 21673137
Following gene: 21673139
Centisome position: 14.4
GC content: 57.94
Gene sequence:
>1512_bases ATGGCCGGTCAAAAGGTTAGAACGCGATTTGCCCCATCTCCAACGGGATACCTCCATGTCGGCGGTCTTCGCACTGCACT GTACAACTATCTGTTCGCCAAGAGAATGAACGGGGATTTCGTTATCAGGATCGAGGATACCGACCAGAGCCGCAAGGTCG AGGATGCTGAAAAGAAACTCATCAGTACGCTCGAATGGGCTGGCATCATCGCTGATGAAAGCCCGATGCACGGCGGCAAC TATGGCCCGTACGTGCAGTCGCAGCGTCTCTCCATCTATCGTGACTACTGTACGCGTCTGCTCGAAGACAAAAACGCCTA CTACTGCTTCTCGACCCCCGAGGAGCTCGAAGAGAACCGCCAGCTTCAGCTCAAACAGGGGCTTCAGCCCAAGTACAATC GCAAGTGGCTGCCCGAGGACATGGGTGGCAACATGCCGGAATCCGAAATCAAAAAGAAGCTCGACGAGGGCGCGCCTTAC GTGGTGAGGATGAAGGTACCGGACTACGTTTCGGTCTGGTTCGAGGATATGATTCGCGGCCCGATCGAGTTCGATTCCGC CACCATCGACGACCAGGTGTTGATGAAGTCCGATGGTTTTCCGACCTACCACTTTGCCAGCGTCATCGACGATCACCTGA TGGAGTTCACCCACATCATTCGTGGCGAGGAGTGGCTGCCTTCGATGCCGAAGCACCTGTTGCTCTACGAATTCTTTGGC TGGGAGCCGCCGAAGTTTGCGCACCTGCCGCTTTTGCTCAATCCCGACCGCTCCAAGCTCAGCAAGCGCCAGGGCGACGT GGCCGTGGAGGATTACATGCGCAAGGGCTACAGCAGCGAGGCGATTGTCAACTTCGTGGCGCTGCTTGGCTGGAACGAGG GCGAGGGGAGCGAGCAGGAGGTGTTCAGCATGGAGGAGCTGATCTCGAAGTTTTCGCTCGAACGGGTCGGCAAGGCTGGC GCTGTGTTCAACGTCGAAAAGCTCTCGTGGCTGGAGAAGCAGTATATCAAGACCCGGCCTGTTGAAAAGATCGTGGGCAA CATCAAGCCGGTGCTCCAGGCGAAGCTGGCCGAGTTCTCGCCGGAGATGTCCGTCGAGCGCATCACTTCCGACGACTATC TTGCCAAGGTGGTCGAGCTGATGCGGGAGCGCGTCAATTTCGAGCACGAGTTCGTGACCTTCAGCAGCTACTTCTTCTTC GAGCCGGAAAGTTATGAAGAGGAGGCCGTGGCCAAGCGCTGGACGCCCAACGTGCCACCGCTGCTTCAGGAGTTTGCCGA TCTACTCGAAGCGAACGACGACTTTACCGCCGAAAACATCGAGGCGCAGCTCAAGGCGTTCGTGGCTCCGAAAGGCTTGA AGCCCGCCGTGCTGATTCATCCGATCAGGATCGCCGTCTCTGGCGTCAGCTTTGGCCCGAGCCTCTACCACATGCTCGAA GTGCTTGGCAAAGAGGCGGTGCTTCGCCGCATCCGCCGCGCCATCGAGCGCATCGAAGTGCCGGCAGCCTGA
Upstream 100 bases:
>100_bases TTTCGAAAGCGCTCTTGGAATATCTGCACGTTTAGATTTCCGGAAGATGCGCCTGACGTCACAATCTGCCGAAATTATTT AACACCTGATCTTTCGTATT
Downstream 100 bases:
>100_bases TCGTCCGATCCCGGGGCATTCCGGTGCCCCGCGGTCGGAAAAAGTTCTTTTTTGTTTGGCGTTAAAAAGGCAATTGCTAT ATTCACCTCACTCCAATTGG
Product: glutamyl-tRNA synthetase
Products: NA
Alternate protein names: Glutamate--tRNA ligase; GluRS [H]
Number of amino acids: Translated: 503; Mature: 502
Protein sequence:
>503_residues MAGQKVRTRFAPSPTGYLHVGGLRTALYNYLFAKRMNGDFVIRIEDTDQSRKVEDAEKKLISTLEWAGIIADESPMHGGN YGPYVQSQRLSIYRDYCTRLLEDKNAYYCFSTPEELEENRQLQLKQGLQPKYNRKWLPEDMGGNMPESEIKKKLDEGAPY VVRMKVPDYVSVWFEDMIRGPIEFDSATIDDQVLMKSDGFPTYHFASVIDDHLMEFTHIIRGEEWLPSMPKHLLLYEFFG WEPPKFAHLPLLLNPDRSKLSKRQGDVAVEDYMRKGYSSEAIVNFVALLGWNEGEGSEQEVFSMEELISKFSLERVGKAG AVFNVEKLSWLEKQYIKTRPVEKIVGNIKPVLQAKLAEFSPEMSVERITSDDYLAKVVELMRERVNFEHEFVTFSSYFFF EPESYEEEAVAKRWTPNVPPLLQEFADLLEANDDFTAENIEAQLKAFVAPKGLKPAVLIHPIRIAVSGVSFGPSLYHMLE VLGKEAVLRRIRRAIERIEVPAA
Sequences:
>Translated_503_residues MAGQKVRTRFAPSPTGYLHVGGLRTALYNYLFAKRMNGDFVIRIEDTDQSRKVEDAEKKLISTLEWAGIIADESPMHGGN YGPYVQSQRLSIYRDYCTRLLEDKNAYYCFSTPEELEENRQLQLKQGLQPKYNRKWLPEDMGGNMPESEIKKKLDEGAPY VVRMKVPDYVSVWFEDMIRGPIEFDSATIDDQVLMKSDGFPTYHFASVIDDHLMEFTHIIRGEEWLPSMPKHLLLYEFFG WEPPKFAHLPLLLNPDRSKLSKRQGDVAVEDYMRKGYSSEAIVNFVALLGWNEGEGSEQEVFSMEELISKFSLERVGKAG AVFNVEKLSWLEKQYIKTRPVEKIVGNIKPVLQAKLAEFSPEMSVERITSDDYLAKVVELMRERVNFEHEFVTFSSYFFF EPESYEEEAVAKRWTPNVPPLLQEFADLLEANDDFTAENIEAQLKAFVAPKGLKPAVLIHPIRIAVSGVSFGPSLYHMLE VLGKEAVLRRIRRAIERIEVPAA >Mature_502_residues AGQKVRTRFAPSPTGYLHVGGLRTALYNYLFAKRMNGDFVIRIEDTDQSRKVEDAEKKLISTLEWAGIIADESPMHGGNY GPYVQSQRLSIYRDYCTRLLEDKNAYYCFSTPEELEENRQLQLKQGLQPKYNRKWLPEDMGGNMPESEIKKKLDEGAPYV VRMKVPDYVSVWFEDMIRGPIEFDSATIDDQVLMKSDGFPTYHFASVIDDHLMEFTHIIRGEEWLPSMPKHLLLYEFFGW EPPKFAHLPLLLNPDRSKLSKRQGDVAVEDYMRKGYSSEAIVNFVALLGWNEGEGSEQEVFSMEELISKFSLERVGKAGA VFNVEKLSWLEKQYIKTRPVEKIVGNIKPVLQAKLAEFSPEMSVERITSDDYLAKVVELMRERVNFEHEFVTFSSYFFFE PESYEEEAVAKRWTPNVPPLLQEFADLLEANDDFTAENIEAQLKAFVAPKGLKPAVLIHPIRIAVSGVSFGPSLYHMLEV LGKEAVLRRIRRAIERIEVPAA
Specific function: Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction:glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu) [H]
COG id: COG0008
COG function: function code J; Glutamyl- and glutaminyl-tRNA synthetases
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the class-I aminoacyl-tRNA synthetase family [H]
Homologues:
Organism=Homo sapiens, GI134288884, Length=504, Percent_Identity=36.5079365079365, Blast_Score=314, Evalue=1e-85, Organism=Homo sapiens, GI62241042, Length=318, Percent_Identity=24.5283018867925, Blast_Score=69, Evalue=2e-11, Organism=Escherichia coli, GI1788743, Length=494, Percent_Identity=35.4251012145749, Blast_Score=306, Evalue=1e-84, Organism=Escherichia coli, GI226510925, Length=301, Percent_Identity=30.8970099667774, Blast_Score=125, Evalue=4e-30, Organism=Escherichia coli, GI1786895, Length=399, Percent_Identity=22.5563909774436, Blast_Score=70, Evalue=3e-13, Organism=Caenorhabditis elegans, GI71993394, Length=495, Percent_Identity=36.7676767676768, Blast_Score=296, Evalue=1e-80, Organism=Saccharomyces cerevisiae, GI6324540, Length=514, Percent_Identity=36.7704280155642, Blast_Score=322, Evalue=1e-88, Organism=Saccharomyces cerevisiae, GI6321192, Length=324, Percent_Identity=26.5432098765432, Blast_Score=82, Evalue=2e-16, Organism=Drosophila melanogaster, GI24665321, Length=503, Percent_Identity=38.7673956262425, Blast_Score=349, Evalue=2e-96, Organism=Drosophila melanogaster, GI24649466, Length=222, Percent_Identity=27.9279279279279, Blast_Score=75, Evalue=1e-13, Organism=Drosophila melanogaster, GI17864488, Length=312, Percent_Identity=24.6794871794872, Blast_Score=67, Evalue=3e-11,
Paralogues:
None
Copy number: 1,800 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008925 - InterPro: IPR020751 - InterPro: IPR001412 - InterPro: IPR004527 - InterPro: IPR000924 - InterPro: IPR020061 - InterPro: IPR020058 - InterPro: IPR014729 [H]
Pfam domain/function: PF00749 tRNA-synt_1c [H]
EC number: =6.1.1.17 [H]
Molecular weight: Translated: 57811; Mature: 57680
Theoretical pI: Translated: 5.10; Mature: 5.10
Prosite motif: PS00178 AA_TRNA_LIGASE_I
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAGQKVRTRFAPSPTGYLHVGGLRTALYNYLFAKRMNGDFVIRIEDTDQSRKVEDAEKKL CCCCCCHHCCCCCCCCEEEECHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHH ISTLEWAGIIADESPMHGGNYGPYVQSQRLSIYRDYCTRLLEDKNAYYCFSTPEELEENR HHHHHHHHEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHCC QLQLKQGLQPKYNRKWLPEDMGGNMPESEIKKKLDEGAPYVVRMKVPDYVSVWFEDMIRG HHHHHCCCCCCCCCCCCCHHCCCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHCC PIEFDSATIDDQVLMKSDGFPTYHFASVIDDHLMEFTHIIRGEEWLPSMPKHLLLYEFFG CCCCCCCCCCCHHHEECCCCCHHHHHHHHHHHHHHHHHHHCCCHHCCCCHHHHHHHHHHC WEPPKFAHLPLLLNPDRSKLSKRQGDVAVEDYMRKGYSSEAIVNFVALLGWNEGEGSEQE CCCCCCCCCCEEECCCHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCHHH VFSMEELISKFSLERVGKAGAVFNVEKLSWLEKQYIKTRPVEKIVGNIKPVLQAKLAEFS HHHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCC PEMSVERITSDDYLAKVVELMRERVNFEHEFVTFSSYFFFEPESYEEEAVAKRWTPNVPP CCCCHHHHCCHHHHHHHHHHHHHHCCCCEEEEEEEEEEEECCCCCHHHHHHHHCCCCCCH LLQEFADLLEANDDFTAENIEAQLKAFVAPKGLKPAVLIHPIRIAVSGVSFGPSLYHMLE HHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEEEHEEECCCCCHHHHHHHH VLGKEAVLRRIRRAIERIEVPAA HHHHHHHHHHHHHHHHHHCCCCC >Mature Secondary Structure AGQKVRTRFAPSPTGYLHVGGLRTALYNYLFAKRMNGDFVIRIEDTDQSRKVEDAEKKL CCCCCHHCCCCCCCCEEEECHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHH ISTLEWAGIIADESPMHGGNYGPYVQSQRLSIYRDYCTRLLEDKNAYYCFSTPEELEENR HHHHHHHHEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHCC QLQLKQGLQPKYNRKWLPEDMGGNMPESEIKKKLDEGAPYVVRMKVPDYVSVWFEDMIRG HHHHHCCCCCCCCCCCCCHHCCCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHCC PIEFDSATIDDQVLMKSDGFPTYHFASVIDDHLMEFTHIIRGEEWLPSMPKHLLLYEFFG CCCCCCCCCCCHHHEECCCCCHHHHHHHHHHHHHHHHHHHCCCHHCCCCHHHHHHHHHHC WEPPKFAHLPLLLNPDRSKLSKRQGDVAVEDYMRKGYSSEAIVNFVALLGWNEGEGSEQE CCCCCCCCCCEEECCCHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCHHH VFSMEELISKFSLERVGKAGAVFNVEKLSWLEKQYIKTRPVEKIVGNIKPVLQAKLAEFS HHHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCC PEMSVERITSDDYLAKVVELMRERVNFEHEFVTFSSYFFFEPESYEEEAVAKRWTPNVPP CCCCHHHHCCHHHHHHHHHHHHHHCCCCEEEEEEEEEEEECCCCCHHHHHHHHCCCCCCH LLQEFADLLEANDDFTAENIEAQLKAFVAPKGLKPAVLIHPIRIAVSGVSFGPSLYHMLE HHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEEEHEEECCCCCHHHHHHHH VLGKEAVLRRIRRAIERIEVPAA HHHHHHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA