| Definition | Chlorobium tepidum TLS, complete genome. |
|---|---|
| Accession | NC_002932 |
| Length | 2,154,946 |
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The map label for this gene is lysN [H]
Identifier: 21672951
GI number: 21672951
Start: 105168
End: 106361
Strand: Reverse
Name: lysN [H]
Synonym: CT0110
Alternate gene names: 21672951
Gene position: 106361-105168 (Counterclockwise)
Preceding gene: 21672952
Following gene: 21672948
Centisome position: 4.94
GC content: 60.8
Gene sequence:
>1194_bases ATGCCACGATTTTCGAAATCCGTTTCTGCATTGCGCTCCTCAGCGATCAGGGAGCTAATGAGCCTCGCTTCTCGCCCTGA TATTCTCTCGTTTGCGGGAGGAATGCCGGGTAACGAGCTGTTTCCGATCGATGAGGTCGAGGAGCTGTTCCGGAACCTCG ACACCAAAACCAAACAGGCCGCGTTCCAGTACGGCCCGACACCCGGCCTGCCCTCACTGCTCGAATCGCTTGGCGGTTTT CTGGAACGCAAAGGCCTGCCAGTCAAGAAGAACCGCCTCATGATCACCACCGGATCACAGCAGGCTCTGAGTATTTTTGC CCGCGCTTTCGTCGATCCGGGCGACCGGGTGCTGACCGAGTACCCCTGCTTCATCGGAGCCATCGCGGCGTTCCGCGCCT GCGGAGCCGAGATCGTCTCGCTGCCGGTCGATGAAGCGGGCATCGACATCGCCATGCTCCGTCAGGAGGTGGAGAATCCC GACCCGGCGAAGTTTCTCTACATCACACCGTACTTCCACAACCCGGCGGGAATGCTCTACAGCACCAACCGCAAGAGGAA GCTGATCAAAGCGTTACAGGGGCGCGACATTCCGCTGCTCGAAGACGACGCTTACGGCGACCTCTGGTTCAGCGACGAAC ACCGCGAAGCCCTGCAACCCATCAAGGCGATCGATCCGGAGGACATCGACGTCTGCTACATGGGCTCCTTCTCCAAGATT CTCGGCCCGGGCCTGCGCCTTGGCTGGATGCTGGCGCCAGAGGCAATCTACGAAAAGTGCGAGCTGATCAAGCAGTCCGC CGACGCCTGTTCGTCAAGCTTCACCCAGGTCATCGCCGACGCATTCATCCGCTCGGGCAGGATCGATACATACGTCGCTT CGGTGCGCGAAGAGTACAAGCGCCGCGCCGCCTCCATGGTCAAAGCCCTGCGAAGCAACCTGCCCGCCTACGTCCGCTGG AACGAACCGAAAGGCGGGTTCTACATCTGGCTGACCCTGCCGGAGGGAGCCGACGCCACTGAAATACTCAAGCGCGCCAT CGAAGGCGGCGCGGTCTTCGTCACCGGCAGCACCTTCGACCCGCAAGGAACACGCAACAACACCATGCGCCTCTCCTACT GCAACAACACCCCGGAAGAGATCGAACGCGGCATTCCCATCATCACCCGCGCCATCCGCGAGGTGTGCGGGTAA
Upstream 100 bases:
>100_bases GCCACAGAAGGCCATCGAGGTGCTGCAACTGCACAAGATGGAGCTGCTCAAGACGGGCGATGTGTACCAGCTCTGAGAAA AGGCCAATCATTGAAACCCA
Downstream 100 bases:
>100_bases AAACATCACACCAAAAAGCCTCGGCACACTCGCCAGGATTGCGAACGGCCAAAAAATGCGAAACCCCCGACGTTGCGGGG GTTTCGTGGCAATTATGTCA
Product: aminotransferase, class I
Products: NA
Alternate protein names: 2-aminoadipate aminotransferase; Alpha-aminoadipate aminotransferase; AAA-AT; AadAT [H]
Number of amino acids: Translated: 397; Mature: 396
Protein sequence:
>397_residues MPRFSKSVSALRSSAIRELMSLASRPDILSFAGGMPGNELFPIDEVEELFRNLDTKTKQAAFQYGPTPGLPSLLESLGGF LERKGLPVKKNRLMITTGSQQALSIFARAFVDPGDRVLTEYPCFIGAIAAFRACGAEIVSLPVDEAGIDIAMLRQEVENP DPAKFLYITPYFHNPAGMLYSTNRKRKLIKALQGRDIPLLEDDAYGDLWFSDEHREALQPIKAIDPEDIDVCYMGSFSKI LGPGLRLGWMLAPEAIYEKCELIKQSADACSSSFTQVIADAFIRSGRIDTYVASVREEYKRRAASMVKALRSNLPAYVRW NEPKGGFYIWLTLPEGADATEILKRAIEGGAVFVTGSTFDPQGTRNNTMRLSYCNNTPEEIERGIPIITRAIREVCG
Sequences:
>Translated_397_residues MPRFSKSVSALRSSAIRELMSLASRPDILSFAGGMPGNELFPIDEVEELFRNLDTKTKQAAFQYGPTPGLPSLLESLGGF LERKGLPVKKNRLMITTGSQQALSIFARAFVDPGDRVLTEYPCFIGAIAAFRACGAEIVSLPVDEAGIDIAMLRQEVENP DPAKFLYITPYFHNPAGMLYSTNRKRKLIKALQGRDIPLLEDDAYGDLWFSDEHREALQPIKAIDPEDIDVCYMGSFSKI LGPGLRLGWMLAPEAIYEKCELIKQSADACSSSFTQVIADAFIRSGRIDTYVASVREEYKRRAASMVKALRSNLPAYVRW NEPKGGFYIWLTLPEGADATEILKRAIEGGAVFVTGSTFDPQGTRNNTMRLSYCNNTPEEIERGIPIITRAIREVCG >Mature_396_residues PRFSKSVSALRSSAIRELMSLASRPDILSFAGGMPGNELFPIDEVEELFRNLDTKTKQAAFQYGPTPGLPSLLESLGGFL ERKGLPVKKNRLMITTGSQQALSIFARAFVDPGDRVLTEYPCFIGAIAAFRACGAEIVSLPVDEAGIDIAMLRQEVENPD PAKFLYITPYFHNPAGMLYSTNRKRKLIKALQGRDIPLLEDDAYGDLWFSDEHREALQPIKAIDPEDIDVCYMGSFSKIL GPGLRLGWMLAPEAIYEKCELIKQSADACSSSFTQVIADAFIRSGRIDTYVASVREEYKRRAASMVKALRSNLPAYVRWN EPKGGFYIWLTLPEGADATEILKRAIEGGAVFVTGSTFDPQGTRNNTMRLSYCNNTPEEIERGIPIITRAIREVCG
Specific function: Catalyzes the transfer of an amino group between 2- oxoadipate (2-OA) and glutamate (Glu) to yield alpha-aminodipate (AAA). It can also transaminate glutamate, leucine, and aromatic amino acids. It also conbtributes in the biosynthesis of other amino acid
COG id: COG1167
COG function: function code KE; Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the class-I pyridoxal-phosphate-dependent aminotransferase family [H]
Homologues:
Organism=Homo sapiens, GI7705897, Length=431, Percent_Identity=25.9860788863109, Blast_Score=145, Evalue=5e-35, Organism=Homo sapiens, GI33469970, Length=431, Percent_Identity=25.9860788863109, Blast_Score=145, Evalue=5e-35, Organism=Homo sapiens, GI4507369, Length=368, Percent_Identity=22.8260869565217, Blast_Score=70, Evalue=3e-12, Organism=Escherichia coli, GI1790797, Length=330, Percent_Identity=29.6969696969697, Blast_Score=151, Evalue=8e-38, Organism=Escherichia coli, GI1787710, Length=384, Percent_Identity=27.0833333333333, Blast_Score=151, Evalue=9e-38, Organism=Escherichia coli, GI1788722, Length=372, Percent_Identity=23.1182795698925, Blast_Score=69, Evalue=4e-13, Organism=Saccharomyces cerevisiae, GI6321236, Length=439, Percent_Identity=25.5125284738041, Blast_Score=106, Evalue=6e-24, Organism=Saccharomyces cerevisiae, GI6321000, Length=242, Percent_Identity=28.9256198347107, Blast_Score=87, Evalue=6e-18, Organism=Saccharomyces cerevisiae, GI6321929, Length=356, Percent_Identity=23.314606741573, Blast_Score=82, Evalue=1e-16, Organism=Drosophila melanogaster, GI21356535, Length=383, Percent_Identity=26.1096605744125, Blast_Score=128, Evalue=7e-30,
Paralogues:
None
Copy number: 10-20 Molecules/Cell [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004839 - InterPro: IPR015424 - InterPro: IPR015421 - InterPro: IPR015422 [H]
Pfam domain/function: PF00155 Aminotran_1_2 [H]
EC number: =2.6.1.39 [H]
Molecular weight: Translated: 44013; Mature: 43882
Theoretical pI: Translated: 5.62; Mature: 5.62
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPRFSKSVSALRSSAIRELMSLASRPDILSFAGGMPGNELFPIDEVEELFRNLDTKTKQA CCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCHHHHHHHHHHCCCHHHHH AFQYGPTPGLPSLLESLGGFLERKGLPVKKNRLMITTGSQQALSIFARAFVDPGDRVLTE HHHCCCCCCHHHHHHHHHHHHHHCCCCEECCEEEEEECCHHHHHHHHHHHCCCCHHHHHH YPCFIGAIAAFRACGAEIVSLPVDEAGIDIAMLRQEVENPDPAKFLYITPYFHNPAGMLY HHHHHHHHHHHHHCCHHHEECCCCCCCCHHHHHHHHHCCCCCCEEEEEECEEECCCCCEE STNRKRKLIKALQGRDIPLLEDDAYGDLWFSDEHREALQPIKAIDPEDIDVCYMGSFSKI ECCHHHHHHHHHCCCCCCEECCCCCCCCCCCCHHHHHHHHHHCCCCCCCCEEECCCHHHH LGPGLRLGWMLAPEAIYEKCELIKQSADACSSSFTQVIADAFIRSGRIDTYVASVREEYK HCCCCCCHHEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH RRAASMVKALRSNLPAYVRWNEPKGGFYIWLTLPEGADATEILKRAIEGGAVFVTGSTFD HHHHHHHHHHHHCCCEEEEECCCCCCEEEEEECCCCCCHHHHHHHHHCCCEEEEECCCCC PQGTRNNTMRLSYCNNTPEEIERGIPIITRAIREVCG CCCCCCCCEEEEECCCCHHHHHCCCHHHHHHHHHHCC >Mature Secondary Structure PRFSKSVSALRSSAIRELMSLASRPDILSFAGGMPGNELFPIDEVEELFRNLDTKTKQA CCHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCHHHHHHHHHHCCCHHHHH AFQYGPTPGLPSLLESLGGFLERKGLPVKKNRLMITTGSQQALSIFARAFVDPGDRVLTE HHHCCCCCCHHHHHHHHHHHHHHCCCCEECCEEEEEECCHHHHHHHHHHHCCCCHHHHHH YPCFIGAIAAFRACGAEIVSLPVDEAGIDIAMLRQEVENPDPAKFLYITPYFHNPAGMLY HHHHHHHHHHHHHCCHHHEECCCCCCCCHHHHHHHHHCCCCCCEEEEEECEEECCCCCEE STNRKRKLIKALQGRDIPLLEDDAYGDLWFSDEHREALQPIKAIDPEDIDVCYMGSFSKI ECCHHHHHHHHHCCCCCCEECCCCCCCCCCCCHHHHHHHHHHCCCCCCCCEEECCCHHHH LGPGLRLGWMLAPEAIYEKCELIKQSADACSSSFTQVIADAFIRSGRIDTYVASVREEYK HCCCCCCHHEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH RRAASMVKALRSNLPAYVRWNEPKGGFYIWLTLPEGADATEILKRAIEGGAVFVTGSTFD HHHHHHHHHHHHCCCEEEEECCCCCCEEEEEECCCCCCHHHHHHHHHCCCEEEEECCCCC PQGTRNNTMRLSYCNNTPEEIERGIPIITRAIREVCG CCCCCCCCEEEEECCCCHHHHHCCCHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA