Click here to switch to the map view.

The map label for this gene is capC [H]

Identifier: 15925652

GI number: 15925652

Start: 2830503

End: 2831270

Strand: Reverse

Name: capC [H]

Synonym: SAV2662

Alternate gene names: 15925652

Gene position: 2831270-2830503 (Counterclockwise)

Preceding gene: 15925653

Following gene: 15925651

Centisome position: 98.36

GC content: 32.16

Gene sequence:

>768_bases
ATGATTGATATTCATAACCATATATTAGTTGATATAGATGATGGTCCTAAAACAATTGAAAAGAGTATTGCACTATTAAA
GCAAGCTAAGGATGAAGGTGTAACAAGTATTGTAGCGACACCTCATCATTTGCATCCGAGATATGATAATACATTTCAAC
AAGTGCTTGTGAAATTGGCGGAGTTAAGAACGCATCCAGAAGTTCAAGCATTGGATATTAAATTATTTCCCGGGCAAGAA
ATTAGAATTACAGATTCGATTCTGAAAGGCTTAGATAATGGTAGTATTCAAGGTATTAATCGTTCGAAATATTTATTAAT
TGAATTTCCAACGGGCGAAGTACCACATTATACAAAACAATTGTTTTTTGAAATACAATCGAGAGGCTACATACCAATCA
TTGCACATCCTGAAAGAAATAGAAGTATCGCCAAAAATCCAGAAATATTATATGAATTGGTTGCAAATGGGGCATTGAGT
CAATTAACATCGAGTTCTTTAGTTGGTGGATTTGGTAAAAACATTCAAAAGTTATCATTACAATTTATAGAATGTAATTT
GGCTCATTTTGTAGCTTCAGATGCACATTCATGTGACCAAAGACCATTTTTGATGCAAGAATTATTTCACAATCATAAAT
TGAAGAAATATTCGAATGATATTGAAGCATTACTTCGAAATGCCAGTTCAGTAATCAATGATAATTTTGTTTATTTAGAC
AGACCGACTAAGCCAGGAAAAGTGAAGTCGTTTTTGAAATGGTTTTAA

Upstream 100 bases:

>100_bases
TTATTGAAGCAACAGGTGCTAAATTATTAGGTGTAGTCTTAAATAGAATGCCTAAAGATAAAAGTGCTAGTTACTATGCA
TATTATGGGACTGATGAATC

Downstream 100 bases:

>100_bases
CTAAATATATTTTTTCGAATTAGACTGGTATACATGTACCAGTCTTTTTGAGTATGCTTAAAATGAATTATAATCATGAT
TATTTACTAATTCGTATAAT

Product: capsular polysaccharide biosynthesis

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 255; Mature: 255

Protein sequence:

>255_residues
MIDIHNHILVDIDDGPKTIEKSIALLKQAKDEGVTSIVATPHHLHPRYDNTFQQVLVKLAELRTHPEVQALDIKLFPGQE
IRITDSILKGLDNGSIQGINRSKYLLIEFPTGEVPHYTKQLFFEIQSRGYIPIIAHPERNRSIAKNPEILYELVANGALS
QLTSSSLVGGFGKNIQKLSLQFIECNLAHFVASDAHSCDQRPFLMQELFHNHKLKKYSNDIEALLRNASSVINDNFVYLD
RPTKPGKVKSFLKWF

Sequences:

>Translated_255_residues
MIDIHNHILVDIDDGPKTIEKSIALLKQAKDEGVTSIVATPHHLHPRYDNTFQQVLVKLAELRTHPEVQALDIKLFPGQE
IRITDSILKGLDNGSIQGINRSKYLLIEFPTGEVPHYTKQLFFEIQSRGYIPIIAHPERNRSIAKNPEILYELVANGALS
QLTSSSLVGGFGKNIQKLSLQFIECNLAHFVASDAHSCDQRPFLMQELFHNHKLKKYSNDIEALLRNASSVINDNFVYLD
RPTKPGKVKSFLKWF
>Mature_255_residues
MIDIHNHILVDIDDGPKTIEKSIALLKQAKDEGVTSIVATPHHLHPRYDNTFQQVLVKLAELRTHPEVQALDIKLFPGQE
IRITDSILKGLDNGSIQGINRSKYLLIEFPTGEVPHYTKQLFFEIQSRGYIPIIAHPERNRSIAKNPEILYELVANGALS
QLTSSSLVGGFGKNIQKLSLQFIECNLAHFVASDAHSCDQRPFLMQELFHNHKLKKYSNDIEALLRNASSVINDNFVYLD
RPTKPGKVKSFLKWF

Specific function: Required for the biosynthesis of type 1 capsular polysaccharide [H]

COG id: COG4464

COG function: function code GM; Capsular polysaccharide biosynthesis protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CpsB/CapC family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016667
- InterPro:   IPR004013
- InterPro:   IPR016195 [H]

Pfam domain/function: PF02811 PHP [H]

EC number: =3.1.3.48 [H]

Molecular weight: Translated: 28918; Mature: 28918

Theoretical pI: Translated: 8.26; Mature: 8.26

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIDIHNHILVDIDDGPKTIEKSIALLKQAKDEGVTSIVATPHHLHPRYDNTFQQVLVKLA
CEECCCEEEEEECCCHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCHHHHHHHHHH
ELRTHPEVQALDIKLFPGQEIRITDSILKGLDNGSIQGINRSKYLLIEFPTGEVPHYTKQ
HHHCCCCEEEEEEEECCCCEEEEHHHHHHCCCCCCEECCCCCCEEEEECCCCCCCHHHHH
LFFEIQSRGYIPIIAHPERNRSIAKNPEILYELVANGALSQLTSSSLVGGFGKNIQKLSL
HHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHCHHCCCHHHHHH
QFIECNLAHFVASDAHSCDQRPFLMQELFHNHKLKKYSNDIEALLRNASSVINDNFVYLD
HHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCEEEEE
RPTKPGKVKSFLKWF
CCCCCHHHHHHHHCC
>Mature Secondary Structure
MIDIHNHILVDIDDGPKTIEKSIALLKQAKDEGVTSIVATPHHLHPRYDNTFQQVLVKLA
CEECCCEEEEEECCCHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCHHHHHHHHHH
ELRTHPEVQALDIKLFPGQEIRITDSILKGLDNGSIQGINRSKYLLIEFPTGEVPHYTKQ
HHHCCCCEEEEEEEECCCCEEEEHHHHHHCCCCCCEECCCCCCEEEEECCCCCCCHHHHH
LFFEIQSRGYIPIIAHPERNRSIAKNPEILYELVANGALSQLTSSSLVGGFGKNIQKLSL
HHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHCHHCCCHHHHHH
QFIECNLAHFVASDAHSCDQRPFLMQELFHNHKLKKYSNDIEALLRNASSVINDNFVYLD
HHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCEEEEE
RPTKPGKVKSFLKWF
CCCCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7961465 [H]