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The map label for this gene is crtM [H]

Identifier: 15925552

GI number: 15925552

Start: 2710154

End: 2711017

Strand: Reverse

Name: crtM [H]

Synonym: SAV2562

Alternate gene names: 15925552

Gene position: 2711017-2710154 (Counterclockwise)

Preceding gene: 15925553

Following gene: 15925551

Centisome position: 94.18

GC content: 31.6

Gene sequence:

>864_bases
ATGACAATGATGGATATGAATTTTAAATATTGTCATAAAATCATGAAGAAACATTCAAAAAGCTTTTCTTACGCTTTTGA
CTTGTTACCAGAAGATCAAAGAAAAGCGGTTTGGGCAATTTATGCTGTGTGTCGTAAAATTGATGACAGTATAGATGTTT
ATGGCGATATTCAATTTTTAAATCAAATAAAAGAAGATATACAATCTATTGAAAAATACCCATATGAACATCATCACTTT
CAAAGTGATCGTAGAATCATGATGGCGCTTCAGCATGTTGCACAACATAAAAATATCGCCTTTCAATCTTTTTATAATCT
CATTGATACTGTATATAAAGATCAACATTTTACAATGTTTGAAACGGACGCTGAATTATTCGGATATTGTTATGGTGTTG
CTGGTACAGTAGGTGAAGTATTGACGCCGATTTTAAGTGATCATGAAACACATCAGACATACGATGTCGCAAGAAGACTT
GGTGAATCGTTGCAATTGATTAATATATTAAGAGATGTCGGTGAAGATTTTGACAATGAACGGGTATATTTTAGTAAGCA
ACGATTAAAGCAATATGAAGTTGATATTGCTGAAGTGTACCAAAATGGTGTTAATAATCATTATATTGACTTATGGGAAT
ATTATGCAGCTATCGCAGAAAAAGATTTTCAAGATGTTATGGATCAAATCAAAGTATTTAGTATTGAAGCACAACCAATC
ATAGAATTAGCAGCACGTATATATATTGAAATACTGGACGAAGTGAGACAGGCTAACTATACATTACATGAACGTGTTTT
TGTGGATAAGCGGAAAAAGGCAAAGTTGTTTCATGAAATAAATAGTAAATATCATAGAATATAG

Upstream 100 bases:

>100_bases
AACGCATCGTTATGGTGTAGTTGAATGGAAAGGTCGTCAATATTCTATATCTAAAGAACAATAAATCAAGGTAATGGCAT
TTCAATATAGGAGGACTAGT

Downstream 100 bases:

>100_bases
GTGGTTGAATAATGAAGATTGCAGTAATTGGTGCAGGTGTCACAGGATTAGCAGCGGCAGCCCGTATTGCTTCTCAAGGT
CATGAAGTGACGATATTTGA

Product: squalene desaturase

Products: NA

Alternate protein names: 4,4'-diapophytoene synthase; DAP synthase; Diapophytoene synthase [H]

Number of amino acids: Translated: 287; Mature: 286

Protein sequence:

>287_residues
MTMMDMNFKYCHKIMKKHSKSFSYAFDLLPEDQRKAVWAIYAVCRKIDDSIDVYGDIQFLNQIKEDIQSIEKYPYEHHHF
QSDRRIMMALQHVAQHKNIAFQSFYNLIDTVYKDQHFTMFETDAELFGYCYGVAGTVGEVLTPILSDHETHQTYDVARRL
GESLQLINILRDVGEDFDNERVYFSKQRLKQYEVDIAEVYQNGVNNHYIDLWEYYAAIAEKDFQDVMDQIKVFSIEAQPI
IELAARIYIEILDEVRQANYTLHERVFVDKRKKAKLFHEINSKYHRI

Sequences:

>Translated_287_residues
MTMMDMNFKYCHKIMKKHSKSFSYAFDLLPEDQRKAVWAIYAVCRKIDDSIDVYGDIQFLNQIKEDIQSIEKYPYEHHHF
QSDRRIMMALQHVAQHKNIAFQSFYNLIDTVYKDQHFTMFETDAELFGYCYGVAGTVGEVLTPILSDHETHQTYDVARRL
GESLQLINILRDVGEDFDNERVYFSKQRLKQYEVDIAEVYQNGVNNHYIDLWEYYAAIAEKDFQDVMDQIKVFSIEAQPI
IELAARIYIEILDEVRQANYTLHERVFVDKRKKAKLFHEINSKYHRI
>Mature_286_residues
TMMDMNFKYCHKIMKKHSKSFSYAFDLLPEDQRKAVWAIYAVCRKIDDSIDVYGDIQFLNQIKEDIQSIEKYPYEHHHFQ
SDRRIMMALQHVAQHKNIAFQSFYNLIDTVYKDQHFTMFETDAELFGYCYGVAGTVGEVLTPILSDHETHQTYDVARRLG
ESLQLINILRDVGEDFDNERVYFSKQRLKQYEVDIAEVYQNGVNNHYIDLWEYYAAIAEKDFQDVMDQIKVFSIEAQPII
ELAARIYIEILDEVRQANYTLHERVFVDKRKKAKLFHEINSKYHRI

Specific function: Catalyzes the head-to-head condensation of two molecules of farnesyl diphosphate (FPP) into the colorless C(30) carotenoid dehydrosqualene (4,4'-diapophytoene). This is the initial step in the biosynthesis of staphyloxanthin, an orange carotenoid present

COG id: COG1562

COG function: function code I; Phytoene/squalene synthetase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phytoene/squalene synthase family. CrtM subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002060
- InterPro:   IPR019845
- InterPro:   IPR008949 [H]

Pfam domain/function: PF00494 SQS_PSY [H]

EC number: NA

Molecular weight: Translated: 34217; Mature: 34086

Theoretical pI: Translated: 6.01; Mature: 6.01

Prosite motif: PS01044 SQUALEN_PHYTOEN_SYN_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTMMDMNFKYCHKIMKKHSKSFSYAFDLLPEDQRKAVWAIYAVCRKIDDSIDVYGDIQFL
CCEECCCHHHHHHHHHHHCCCHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
NQIKEDIQSIEKYPYEHHHFQSDRRIMMALQHVAQHKNIAFQSFYNLIDTVYKDQHFTMF
HHHHHHHHHHHHCCCHHHHCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCEEE
ETDAELFGYCYGVAGTVGEVLTPILSDHETHQTYDVARRLGESLQLINILRDVGEDFDNE
ECCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
RVYFSKQRLKQYEVDIAEVYQNGVNNHYIDLWEYYAAIAEKDFQDVMDQIKVFSIEAQPI
CCHHHHHHHHHHCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
IELAARIYIEILDEVRQANYTLHERVFVDKRKKAKLFHEINSKYHRI
HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
TMMDMNFKYCHKIMKKHSKSFSYAFDLLPEDQRKAVWAIYAVCRKIDDSIDVYGDIQFL
CEECCCHHHHHHHHHHHCCCHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
NQIKEDIQSIEKYPYEHHHFQSDRRIMMALQHVAQHKNIAFQSFYNLIDTVYKDQHFTMF
HHHHHHHHHHHHCCCHHHHCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCEEE
ETDAELFGYCYGVAGTVGEVLTPILSDHETHQTYDVARRLGESLQLINILRDVGEDFDNE
ECCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
RVYFSKQRLKQYEVDIAEVYQNGVNNHYIDLWEYYAAIAEKDFQDVMDQIKVFSIEAQPI
CCHHHHHHHHHHCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
IELAARIYIEILDEVRQANYTLHERVFVDKRKKAKLFHEINSKYHRI
HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA