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The map label for this gene is int

Identifier: 15924992

GI number: 15924992

Start: 2125073

End: 2126110

Strand: Direct

Name: int

Synonym: SAV2002

Alternate gene names: NA

Gene position: 2125073-2126110 (Clockwise)

Preceding gene: 15924991

Following gene: 15924993

Centisome position: 73.82

GC content: 30.73

Gene sequence:

>1038_bases
ATGAAAACACGTTGTTACGATGGTAAAAAATGGCAATATGAATTTAAGCATGAAGGAAAAAGATACCGTAAGAAAGGTTT
TAGAACAAAGCGTGAAGCTAATTCTGCTGGACTAGACAAGTTAAATGAGTTAAGAAGTGGTTTTAATATAGATAACTATA
TAACTCTTGAAGAATACTTCGAAAATTGGATTAAAACATATAAACAACCTGTTGTTAAAGAAAATACCTACCGTCATTAT
AGAAATGCATTACAACATATACAAAAACATAAAATAGGTAAAATGGAGTTATCAAAGATAAATAGACAAGTTTATCAGAA
ATTCATAAACGACTATTCAAAAGAACACGCAAAAGAAACTATAAGAAAAACAAACGGTGCTATTCGGTCAGCTTTAGATG
ACGCATTATATGATGGACTTATTTTTAAAAACCCCGCTTATAAAGTTAATTATAAAGCCGGAAAACCTACGAAGTCAGAA
CAAGAAAAATTCATCTCGGTAACTGAATATGAAATACTAAAAGATCACGTCAGAAAGAAGAGAACTCGTTCATCATTAGC
GCTATTCATAATGATTTGTACGGGTTGTCGTGTCAGTGGTGCAAGAAATATAAAGATTGAGCATATCAACCAAGTGAAAA
ACACTATATTTATTGACGAGCGAAAAACCAATACTTCCCCTAGATATATCAGTATCGCTAAATCTGATATGAAACACATT
ATGGACGTCATAAGTACATTTGCAATTAGCTATGATGGTTACATTTTCAAAGAAGGCGGATCTATAATTAACCTTCATGC
TATCAATAATGCTTTGAAATCAGCCTGTAGAGTCAATAATATACCAATTATTACATCGCACGCATTAAGACACACTCATT
GTTCTTATTTACTAGCAAAAGGTGTATCTATACATTACATTTCTAAAAGATTAGGTCATAAAAATATAGCAATAACTACA
TCCGTGTATTCTCATTTGTTAGAAGAAAAATTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAA

Upstream 100 bases:

>100_bases
TACAATGATAGAGTTTCTGAAATTATAAATAATGATAATTGATTCCACAGGGTAGCCCGCCTACCCTTATTATTTTTTGC
CAATTTTGAGGAGGGAACGC

Downstream 100 bases:

>100_bases
TTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGACAATAT
AAACGCGCTGATTTAATCGG

Product: integrase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 345; Mature: 345

Protein sequence:

>345_residues
MKTRCYDGKKWQYEFKHEGKRYRKKGFRTKREANSAGLDKLNELRSGFNIDNYITLEEYFENWIKTYKQPVVKENTYRHY
RNALQHIQKHKIGKMELSKINRQVYQKFINDYSKEHAKETIRKTNGAIRSALDDALYDGLIFKNPAYKVNYKAGKPTKSE
QEKFISVTEYEILKDHVRKKRTRSSLALFIMICTGCRVSGARNIKIEHINQVKNTIFIDERKTNTSPRYISIAKSDMKHI
MDVISTFAISYDGYIFKEGGSIINLHAINNALKSACRVNNIPIITSHALRHTHCSYLLAKGVSIHYISKRLGHKNIAITT
SVYSHLLEEKFNEEDKKTTKILESM

Sequences:

>Translated_345_residues
MKTRCYDGKKWQYEFKHEGKRYRKKGFRTKREANSAGLDKLNELRSGFNIDNYITLEEYFENWIKTYKQPVVKENTYRHY
RNALQHIQKHKIGKMELSKINRQVYQKFINDYSKEHAKETIRKTNGAIRSALDDALYDGLIFKNPAYKVNYKAGKPTKSE
QEKFISVTEYEILKDHVRKKRTRSSLALFIMICTGCRVSGARNIKIEHINQVKNTIFIDERKTNTSPRYISIAKSDMKHI
MDVISTFAISYDGYIFKEGGSIINLHAINNALKSACRVNNIPIITSHALRHTHCSYLLAKGVSIHYISKRLGHKNIAITT
SVYSHLLEEKFNEEDKKTTKILESM
>Mature_345_residues
MKTRCYDGKKWQYEFKHEGKRYRKKGFRTKREANSAGLDKLNELRSGFNIDNYITLEEYFENWIKTYKQPVVKENTYRHY
RNALQHIQKHKIGKMELSKINRQVYQKFINDYSKEHAKETIRKTNGAIRSALDDALYDGLIFKNPAYKVNYKAGKPTKSE
QEKFISVTEYEILKDHVRKKRTRSSLALFIMICTGCRVSGARNIKIEHINQVKNTIFIDERKTNTSPRYISIAKSDMKHI
MDVISTFAISYDGYIFKEGGSIINLHAINNALKSACRVNNIPIITSHALRHTHCSYLLAKGVSIHYISKRLGHKNIAITT
SVYSHLLEEKFNEEDKKTTKILESM

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerC subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 40289; Mature: 40289

Theoretical pI: Translated: 10.28; Mature: 10.28

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTRCYDGKKWQYEFKHEGKRYRKKGFRTKREANSAGLDKLNELRSGFNIDNYITLEEYF
CCCCCCCCCCCEEHHHHHHHHHHHHCCCCHHHCCCCCHHHHHHHHCCCCCCCEEEHHHHH
ENWIKTYKQPVVKENTYRHYRNALQHIQKHKIGKMELSKINRQVYQKFINDYSKEHAKET
HHHHHHHHCCHHCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
IRKTNGAIRSALDDALYDGLIFKNPAYKVNYKAGKPTKSEQEKFISVTEYEILKDHVRKK
HHHHHHHHHHHHHHHHHCCEEECCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHH
RTRSSLALFIMICTGCRVSGARNIKIEHINQVKNTIFIDERKTNTSPRYISIAKSDMKHI
HHHHHHHHHHHHHHCCCCCCCCCEEHHHHHHHHHEEEEECCCCCCCCCEEEHHHHHHHHH
MDVISTFAISYDGYIFKEGGSIINLHAINNALKSACRVNNIPIITSHALRHTHCSYLLAK
HHHHHHHHHHCCCEEEECCCCEEEEHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHC
GVSIHYISKRLGHKNIAITTSVYSHLLEEKFNEEDKKTTKILESM
CCHHHHHHHHHCCCCEEEEHHHHHHHHHHHHCCHHHHHHHHHHCC
>Mature Secondary Structure
MKTRCYDGKKWQYEFKHEGKRYRKKGFRTKREANSAGLDKLNELRSGFNIDNYITLEEYF
CCCCCCCCCCCEEHHHHHHHHHHHHCCCCHHHCCCCCHHHHHHHHCCCCCCCEEEHHHHH
ENWIKTYKQPVVKENTYRHYRNALQHIQKHKIGKMELSKINRQVYQKFINDYSKEHAKET
HHHHHHHHCCHHCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
IRKTNGAIRSALDDALYDGLIFKNPAYKVNYKAGKPTKSEQEKFISVTEYEILKDHVRKK
HHHHHHHHHHHHHHHHHCCEEECCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHH
RTRSSLALFIMICTGCRVSGARNIKIEHINQVKNTIFIDERKTNTSPRYISIAKSDMKHI
HHHHHHHHHHHHHHCCCCCCCCCEEHHHHHHHHHEEEEECCCCCCCCCEEEHHHHHHHHH
MDVISTFAISYDGYIFKEGGSIINLHAINNALKSACRVNNIPIITSHALRHTHCSYLLAK
HHHHHHHHHHCCCEEEECCCCEEEEHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHC
GVSIHYISKRLGHKNIAITTSVYSHLLEEKFNEEDKKTTKILESM
CCHHHHHHHHHCCCCEEEEHHHHHHHHHHHHCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11997336 [H]