Click here to switch to the map view.

The map label for this gene is yqgF [C]

Identifier: 15924606

GI number: 15924606

Start: 1722170

End: 1722541

Strand: Reverse

Name: yqgF [C]

Synonym: SAV1616

Alternate gene names: 15924606

Gene position: 1722541-1722170 (Counterclockwise)

Preceding gene: 15924607

Following gene: 15924605

Centisome position: 59.84

GC content: 32.26

Gene sequence:

>372_bases
ATTAGTGATATAATGGGTTGGACGGCACAAGGATTAGACACACTCCGAATCAATGAAGAAAATAATGAATTAGGTATTGA
CCAATTAGTAGACATTATTAAAAAACATAATGTGGGTACAGTCGTAATAGGACTACCTAAAAACATGAATAATTCAATAG
GATTTCGAGGCGAAGCTTCGTTAACATATAAAGAAAAATTATTAGAAGCTTATCCTTCTATTGAGATTGTGATGTGGGAT
GAAAGATTAAGCACAATGGCTGCTGAACGATCATTATTAGAAGCAGATGTTTCAAGACAAAAAAGAAAACAAGTGATTGA
TAAAATGGCAGCGGTATTTATTTTACAAGGCTATTTAGATTCACTACATTAA

Upstream 100 bases:

>100_bases
AGAACTTGTTTCTTACTATTTAAAAGAGCAAAATAAATAATTTATGTTACAACATAAAATTTTAGGACTCGATGTCGGTA
GTAGAACGGTAGGAATTGCA

Downstream 100 bases:

>100_bases
AAGGAGATTTTACTATGACTGAACATAATCATGATTCACAACTAGAAATTAATAACGAAGAAGAATTATTAACTTTATTC
GATGAAGAGGGAAATGAAGT

Product: Holliday junction resolvase-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 123; Mature: 122

Protein sequence:

>123_residues
MSDIMGWTAQGLDTLRINEENNELGIDQLVDIIKKHNVGTVVIGLPKNMNNSIGFRGEASLTYKEKLLEAYPSIEIVMWD
ERLSTMAAERSLLEADVSRQKRKQVIDKMAAVFILQGYLDSLH

Sequences:

>Translated_123_residues
MSDIMGWTAQGLDTLRINEENNELGIDQLVDIIKKHNVGTVVIGLPKNMNNSIGFRGEASLTYKEKLLEAYPSIEIVMWD
ERLSTMAAERSLLEADVSRQKRKQVIDKMAAVFILQGYLDSLH
>Mature_122_residues
SDIMGWTAQGLDTLRINEENNELGIDQLVDIIKKHNVGTVVIGLPKNMNNSIGFRGEASLTYKEKLLEAYPSIEIVMWDE
RLSTMAAERSLLEADVSRQKRKQVIDKMAAVFILQGYLDSLH

Specific function: Could be a nuclease that resolves Holliday junction intermediates in genetic recombination [H]

COG id: COG0816

COG function: function code L; Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis)

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yqgF HJR family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005227
- InterPro:   IPR006641
- InterPro:   IPR012337 [H]

Pfam domain/function: PF03652 UPF0081 [H]

EC number: NA

Molecular weight: Translated: 13893; Mature: 13762

Theoretical pI: Translated: 4.92; Mature: 4.92

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.9 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDIMGWTAQGLDTLRINEENNELGIDQLVDIIKKHNVGTVVIGLPKNMNNSIGFRGEAS
CCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCC
LTYKEKLLEAYPSIEIVMWDERLSTMAAERSLLEADVSRQKRKQVIDKMAAVFILQGYLD
HHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SLH
HCC
>Mature Secondary Structure 
SDIMGWTAQGLDTLRINEENNELGIDQLVDIIKKHNVGTVVIGLPKNMNNSIGFRGEAS
CCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCC
LTYKEKLLEAYPSIEIVMWDERLSTMAAERSLLEADVSRQKRKQVIDKMAAVFILQGYLD
HHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SLH
HCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA