Click here to switch to the map view.

The map label for this gene is 15923902

Identifier: 15923902

GI number: 15923902

Start: 957570

End: 958007

Strand: Direct

Name: 15923902

Synonym: SAV0912

Alternate gene names: NA

Gene position: 957570-958007 (Clockwise)

Preceding gene: 15923901

Following gene: 15923903

Centisome position: 33.27

GC content: 38.58

Gene sequence:

>438_bases
ATGGATATTAACTGGAAATTGAGATTCAAAAATAAAGCAGTACTAACTGGTTTAGTTGGAGCGTTGTTGCTATTTATCAA
GCAAATCACGGATTTGTTCGGATTAGATTTATCCACTCAATTAAATCAAGCTAGCGCTATTATAGGCGCTATCCTCACGT
TACTTACAGGTATTGGTGTTATTACTGACCCAACGTCAAAAGGCGTCTCAGATTCATCTATAGCACAGACATATCAAGCG
CCTAGAGATAGCAAAAAAGAAGAACAACAAGTTACGTGGAAATCATCACAAGACAGTAGTTTAACGCCGGAATTAAGCGC
GAAAGCACCAAAAGAATATGATACATCACAACCTTTCACAGACGCCTCTAACGATGTTGGCTTTGATGTGAATGAGTATC
ATCATGGAGGTGGCGACAATGCAAGCAAAATTAACTAA

Upstream 100 bases:

>100_bases
ATAAGTGATGTTTATTCAGGATCTCCGACATTGACCATTGAATAATTTTAAACGACTAATTTTTTAGTCGTTTTTTATTT
TGGATAAAAGGAGCAAACAA

Downstream 100 bases:

>100_bases
AAAAGAGTTTATAGAGTGGTTGAAAACTTCTGAGGGAAAACAATTCAATGTGGACTTATGGTATGGATTTCAATGCTTTG
ATTATGCCAATGCTGGTTGG

Product: holin

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 145; Mature: 145

Protein sequence:

>145_residues
MDINWKLRFKNKAVLTGLVGALLLFIKQITDLFGLDLSTQLNQASAIIGAILTLLTGIGVITDPTSKGVSDSSIAQTYQA
PRDSKKEEQQVTWKSSQDSSLTPELSAKAPKEYDTSQPFTDASNDVGFDVNEYHHGGGDNASKIN

Sequences:

>Translated_145_residues
MDINWKLRFKNKAVLTGLVGALLLFIKQITDLFGLDLSTQLNQASAIIGAILTLLTGIGVITDPTSKGVSDSSIAQTYQA
PRDSKKEEQQVTWKSSQDSSLTPELSAKAPKEYDTSQPFTDASNDVGFDVNEYHHGGGDNASKIN
>Mature_145_residues
MDINWKLRFKNKAVLTGLVGALLLFIKQITDLFGLDLSTQLNQASAIIGAILTLLTGIGVITDPTSKGVSDSSIAQTYQA
PRDSKKEEQQVTWKSSQDSSLTPELSAKAPKEYDTSQPFTDASNDVGFDVNEYHHGGGDNASKIN

Specific function: Unknown

COG id: COG5546

COG function: function code S; Small integral membrane protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 15660; Mature: 15660

Theoretical pI: Translated: 4.84; Mature: 4.84

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
0.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
0.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDINWKLRFKNKAVLTGLVGALLLFIKQITDLFGLDLSTQLNQASAIIGAILTLLTGIGV
CCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCC
ITDPTSKGVSDSSIAQTYQAPRDSKKEEQQVTWKSSQDSSLTPELSAKAPKEYDTSQPFT
EECCCCCCCCHHHHHHHHHCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
DASNDVGFDVNEYHHGGGDNASKIN
CCCCCCCCCHHHHCCCCCCCCCCCC
>Mature Secondary Structure
MDINWKLRFKNKAVLTGLVGALLLFIKQITDLFGLDLSTQLNQASAIIGAILTLLTGIGV
CCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCC
ITDPTSKGVSDSSIAQTYQAPRDSKKEEQQVTWKSSQDSSLTPELSAKAPKEYDTSQPFT
EECCCCCCCCHHHHHHHHHCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
DASNDVGFDVNEYHHGGGDNASKIN
CCCCCCCCCHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA