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The map label for this gene is yddH [H]

Identifier: 15923390

GI number: 15923390

Start: 443107

End: 444129

Strand: Reverse

Name: yddH [H]

Synonym: SAV0400

Alternate gene names: 15923390

Gene position: 444129-443107 (Counterclockwise)

Preceding gene: 15923391

Following gene: 15923389

Centisome position: 15.43

GC content: 41.35

Gene sequence:

>1023_bases
ATGAAGCTAAAAATAACAGTGATTTGTAGTGTGGTCTTCTCTCTCTTCTTTTTTCTCTTATTATTCCTAGTCATTTTCTT
TGCAGATGATACGGACAGTGGCGAAAACAACAAGGATTCTTCTATTCCACAAGGCGGTGTGACCGTTTCACCAGAAGTGT
TGGCACACCGTCCGTTGATTGAAAAATATGGTAAGGAATATGGGATTGAAGACTATGTTTCTTATATCTTAGCCATTATG
CAAGTGGAATCGGGCGGTACAGCAGAAGATGTTATGCAAAGTTCCGAATCTTTGGGTTTACCGCCCAACAGTTTGAGTAC
CGAAGAGTCCATCAAACAAGGGGTTAAATATTTCAGTGAATTATTAACCAGTGCAGAACAACAAGGAGTGGATATAGATT
CTGTTATCCAATCTTATAATTATGGCGGTGGCTTTTTAAATTATGTGAGGAGTCATGGGAAAAAATATACCTATGAATTA
GCCGAACAGTTTTCTAAAGAGAAGTCGGGTGGTCAAAAAGCAGACTATCCCAATCCTATAGCCATACCTGTGAATGGTGG
TTGGCGATATAACTATGGAAATCAGTTTTATGTTCAGTTGGTTTCACAATACCTAACCGACACTTCCCCAACAGAATTTG
ATGATGAAACCGTGCAAGTCATTATGGACGAAGCCTTGAAATACGAAGGGTTTCCCTATGTCTTTGGAGGGGCGTCGCCT
ACCACCTCTTTTGATTGTAGTGGCTTAATACAATGGGTGTATGACAAAGCTGGCATTTCTCTCCCTCGTGTCGCCCAAGA
TCAGTATGACGCTACGCAAGAAATCTCTATGGAAGAAGCCCAAGCAGGCGACCTTATCTTCTTTCATTCAACCTATAATG
CAGGCACATATGTGACTCATGTGGCGATATATTTAGAGGGAAATCGCTTTTATCATGCAGGCGACCCAATCGGTTATGGC
GACTTAAGCAGTCGTTATTGGCAAGACCATCTGATTGGGGCTAGACGTGTTATTCATAACTAA

Upstream 100 bases:

>100_bases
ATCAGCGACCATTGAAAAAAGAGCAAAAACAAAAGACACCACCGAAGCAATTCAATCAGAGGAAGCTAAATAAAAGAACG
GATAAGCGAGGACAACAAAC

Downstream 100 bases:

>100_bases
GAAAGGAATGAATCAAATGATTATAAAAATCGAGCGAAAAGAAAAGAAGGAGAAACCAAAGAAATCTAAAAAACCGAGCA
AGCAAAGAAAAGTTCCGATG

Product: NLP/P60 family lipoprotein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 340; Mature: 340

Protein sequence:

>340_residues
MKLKITVICSVVFSLFFFLLLFLVIFFADDTDSGENNKDSSIPQGGVTVSPEVLAHRPLIEKYGKEYGIEDYVSYILAIM
QVESGGTAEDVMQSSESLGLPPNSLSTEESIKQGVKYFSELLTSAEQQGVDIDSVIQSYNYGGGFLNYVRSHGKKYTYEL
AEQFSKEKSGGQKADYPNPIAIPVNGGWRYNYGNQFYVQLVSQYLTDTSPTEFDDETVQVIMDEALKYEGFPYVFGGASP
TTSFDCSGLIQWVYDKAGISLPRVAQDQYDATQEISMEEAQAGDLIFFHSTYNAGTYVTHVAIYLEGNRFYHAGDPIGYG
DLSSRYWQDHLIGARRVIHN

Sequences:

>Translated_340_residues
MKLKITVICSVVFSLFFFLLLFLVIFFADDTDSGENNKDSSIPQGGVTVSPEVLAHRPLIEKYGKEYGIEDYVSYILAIM
QVESGGTAEDVMQSSESLGLPPNSLSTEESIKQGVKYFSELLTSAEQQGVDIDSVIQSYNYGGGFLNYVRSHGKKYTYEL
AEQFSKEKSGGQKADYPNPIAIPVNGGWRYNYGNQFYVQLVSQYLTDTSPTEFDDETVQVIMDEALKYEGFPYVFGGASP
TTSFDCSGLIQWVYDKAGISLPRVAQDQYDATQEISMEEAQAGDLIFFHSTYNAGTYVTHVAIYLEGNRFYHAGDPIGYG
DLSSRYWQDHLIGARRVIHN
>Mature_340_residues
MKLKITVICSVVFSLFFFLLLFLVIFFADDTDSGENNKDSSIPQGGVTVSPEVLAHRPLIEKYGKEYGIEDYVSYILAIM
QVESGGTAEDVMQSSESLGLPPNSLSTEESIKQGVKYFSELLTSAEQQGVDIDSVIQSYNYGGGFLNYVRSHGKKYTYEL
AEQFSKEKSGGQKADYPNPIAIPVNGGWRYNYGNQFYVQLVSQYLTDTSPTEFDDETVQVIMDEALKYEGFPYVFGGASP
TTSFDCSGLIQWVYDKAGISLPRVAQDQYDATQEISMEEAQAGDLIFFHSTYNAGTYVTHVAIYLEGNRFYHAGDPIGYG
DLSSRYWQDHLIGARRVIHN

Specific function: Unknown

COG id: COG0791

COG function: function code M; Cell wall-associated hydrolases (invasion-associated proteins)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nlpC/p60 family [H]

Homologues:

Organism=Escherichia coli, GI1787944, Length=130, Percent_Identity=40, Blast_Score=88, Evalue=8e-19,
Organism=Escherichia coli, GI1786421, Length=115, Percent_Identity=35.6521739130435, Blast_Score=78, Evalue=1e-15,
Organism=Escherichia coli, GI1788501, Length=121, Percent_Identity=33.0578512396694, Blast_Score=70, Evalue=3e-13,
Organism=Escherichia coli, GI1788001, Length=120, Percent_Identity=32.5, Blast_Score=62, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008258
- InterPro:   IPR000064 [H]

Pfam domain/function: PF00877 NLPC_P60; PF01464 SLT [H]

EC number: NA

Molecular weight: Translated: 37959; Mature: 37959

Theoretical pI: Translated: 4.30; Mature: 4.30

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLKITVICSVVFSLFFFLLLFLVIFFADDTDSGENNKDSSIPQGGVTVSPEVLAHRPLI
CEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEECHHHHHCCHHH
EKYGKEYGIEDYVSYILAIMQVESGGTAEDVMQSSESLGLPPNSLSTEESIKQGVKYFSE
HHHHHHCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHH
LLTSAEQQGVDIDSVIQSYNYGGGFLNYVRSHGKKYTYELAEQFSKEKSGGQKADYPNPI
HHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCE
AIPVNGGWRYNYGNQFYVQLVSQYLTDTSPTEFDDETVQVIMDEALKYEGFPYVFGGASP
EEECCCCEEECCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCEEECCCCC
TTSFDCSGLIQWVYDKAGISLPRVAQDQYDATQEISMEEAQAGDLIFFHSTYNAGTYVTH
CCCCCHHHHHHHHHHHCCCCCCCHHHHHHCHHHHHHHHHHCCCCEEEEECCCCCCCEEEE
VAIYLEGNRFYHAGDPIGYGDLSSRYWQDHLIGARRVIHN
EEEEEECCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MKLKITVICSVVFSLFFFLLLFLVIFFADDTDSGENNKDSSIPQGGVTVSPEVLAHRPLI
CEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEECHHHHHCCHHH
EKYGKEYGIEDYVSYILAIMQVESGGTAEDVMQSSESLGLPPNSLSTEESIKQGVKYFSE
HHHHHHCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHH
LLTSAEQQGVDIDSVIQSYNYGGGFLNYVRSHGKKYTYELAEQFSKEKSGGQKADYPNPI
HHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCE
AIPVNGGWRYNYGNQFYVQLVSQYLTDTSPTEFDDETVQVIMDEALKYEGFPYVFGGASP
EEECCCCEEECCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCEEECCCCC
TTSFDCSGLIQWVYDKAGISLPRVAQDQYDATQEISMEEAQAGDLIFFHSTYNAGTYVTH
CCCCCHHHHHHHHHHHCCCCCCCHHHHHHCHHHHHHHHHHCCCCEEEEECCCCCCCEEEE
VAIYLEGNRFYHAGDPIGYGDLSSRYWQDHLIGARRVIHN
EEEEEECCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]