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The map label for this gene is dgoD [H]

Identifier: 15899900

GI number: 15899900

Start: 2943527

End: 2944714

Strand: Reverse

Name: dgoD [H]

Synonym: SSO3198

Alternate gene names: 15899900

Gene position: 2944714-2943527 (Counterclockwise)

Preceding gene: 15899902

Following gene: 15899899

Centisome position: 98.41

GC content: 38.8

Gene sequence:

>1188_bases
ATGAGAATCAGAGAAATAGAACCAATAGTACTCACCTCGAAAGAGAAAGGAAGTGCAACTTGGGCATCTATAATGATTGT
CACAAGGGTCATTACGGAAAATGGGGAAGTAGGCTATGGTGAGGCAGTACCCACACTAAGAGTTATATCTGTATATAACG
CAATTAAACAAGTTAGTAAGGCTTATATAGGGAAAGAGGTAGAGGAAGTTGAGAAGAACTATCATGAATGGTATAAACAA
GATTTCTATTTAGCTAGGTCTTTTGAATCAGCAACTGCAGTAAGTGCAATCGATATAGCCTCATGGGATATAATAGGGAA
AGAGCTTGGAGCACCAATTCATAAATTATTAGGAGGAAAAACCAGGGATAGGGTACCAGTCTACGCAAACGGATGGTATC
AGGACTGCGTAACTCCAGAGGAATTTGCGGAAAAGGCAAAAGACGTTGTAAAGATGGGATATAAGGCTTTAAAATTTGAT
CCGTTTGGTCCATATTACGATTGGATAGATGAGAGAGGTCTAAGAGAAGCTGAGGAGAGAGTAAAGGCTGTTAGAGAGGC
AGTTGGAGACAACGTGGATATTTTAATAGAGCATCACGGTAGGTTTAATGCGAATTCGGCTATTATGATAGCGAAAAGAT
TGGAAAAATACAATCCGGGATTTATGGAGGAACCGGTACATCATGAGGACGTAATTGGTTTAAGAAAGTATAAAGCCAGT
ACTCATTTAAGGGTTGCATTGGGAGAAAGACTGATAAGTGAAAAGGAAACTGCGTTTTACGTTGAGGAAGGTCTTGTAAA
CATATTGCAACCAGATTTAACTAATATAGGTGGTGTAACAGTAGGTAGGAGTGTTATAAAAATAGCTGAAGCTAATGATG
TAGAGGTGGCTTTTCACAACGCCTTTGGTTCAATACAGAATGCAGTTGAAATACAACTAAGTGCAGTTACACAGAATTTG
TATTTACTTGAGAACTTCTATGATTGGTTCCCTCAGTGGAAAAGGGATTTAGTATATAATGAAACGCCAGTTGAAGGAGG
TCACGTTAAGGTTCCATACAAGCCTGGACTAGGTGTTTCAATTAATGAAAAAATAATAGAACAGCTAAGAGCTGAACCAA
TACCATTAGATGTAATTGAAGAACCGGTTTGGGTCGTCAAGGGAACCTGGAAGAATTATGGTGTTTGA

Upstream 100 bases:

>100_bases
ATAGAATGATCCTTATAATATATCCTACAAATTTTATTAAGTCTTTATCGCTGATTCTTGCCATTATGTAAGTTTATATT
TGCTACCCAAAATATAGTTT

Downstream 100 bases:

>100_bases
GGATGCCAGAAATCATAACTCCAATCATAACCCCATTCACTAAAGATAATAGAATAGATAAGGAAAAATTAAAGATACAT
GCGGAGAATCTCATTAGGAA

Product: muconate cycloisomerase related protein

Products: NA

Alternate protein names: GalD [H]

Number of amino acids: Translated: 395; Mature: 395

Protein sequence:

>395_residues
MRIREIEPIVLTSKEKGSATWASIMIVTRVITENGEVGYGEAVPTLRVISVYNAIKQVSKAYIGKEVEEVEKNYHEWYKQ
DFYLARSFESATAVSAIDIASWDIIGKELGAPIHKLLGGKTRDRVPVYANGWYQDCVTPEEFAEKAKDVVKMGYKALKFD
PFGPYYDWIDERGLREAEERVKAVREAVGDNVDILIEHHGRFNANSAIMIAKRLEKYNPGFMEEPVHHEDVIGLRKYKAS
THLRVALGERLISEKETAFYVEEGLVNILQPDLTNIGGVTVGRSVIKIAEANDVEVAFHNAFGSIQNAVEIQLSAVTQNL
YLLENFYDWFPQWKRDLVYNETPVEGGHVKVPYKPGLGVSINEKIIEQLRAEPIPLDVIEEPVWVVKGTWKNYGV

Sequences:

>Translated_395_residues
MRIREIEPIVLTSKEKGSATWASIMIVTRVITENGEVGYGEAVPTLRVISVYNAIKQVSKAYIGKEVEEVEKNYHEWYKQ
DFYLARSFESATAVSAIDIASWDIIGKELGAPIHKLLGGKTRDRVPVYANGWYQDCVTPEEFAEKAKDVVKMGYKALKFD
PFGPYYDWIDERGLREAEERVKAVREAVGDNVDILIEHHGRFNANSAIMIAKRLEKYNPGFMEEPVHHEDVIGLRKYKAS
THLRVALGERLISEKETAFYVEEGLVNILQPDLTNIGGVTVGRSVIKIAEANDVEVAFHNAFGSIQNAVEIQLSAVTQNL
YLLENFYDWFPQWKRDLVYNETPVEGGHVKVPYKPGLGVSINEKIIEQLRAEPIPLDVIEEPVWVVKGTWKNYGV
>Mature_395_residues
MRIREIEPIVLTSKEKGSATWASIMIVTRVITENGEVGYGEAVPTLRVISVYNAIKQVSKAYIGKEVEEVEKNYHEWYKQ
DFYLARSFESATAVSAIDIASWDIIGKELGAPIHKLLGGKTRDRVPVYANGWYQDCVTPEEFAEKAKDVVKMGYKALKFD
PFGPYYDWIDERGLREAEERVKAVREAVGDNVDILIEHHGRFNANSAIMIAKRLEKYNPGFMEEPVHHEDVIGLRKYKAS
THLRVALGERLISEKETAFYVEEGLVNILQPDLTNIGGVTVGRSVIKIAEANDVEVAFHNAFGSIQNAVEIQLSAVTQNL
YLLENFYDWFPQWKRDLVYNETPVEGGHVKVPYKPGLGVSINEKIIEQLRAEPIPLDVIEEPVWVVKGTWKNYGV

Specific function: Catalyzes the dehydration of D-galactonate to 2-keto-3- deoxy-D-galactonate [H]

COG id: COG4948

COG function: function code MR; L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the mandelate racemase/muconate lactonizing enzyme family. GalD subfamily [H]

Homologues:

Organism=Escherichia coli, GI48994953, Length=355, Percent_Identity=31.830985915493, Blast_Score=157, Evalue=1e-39,
Organism=Escherichia coli, GI1787864, Length=380, Percent_Identity=26.0526315789474, Blast_Score=106, Evalue=2e-24,
Organism=Escherichia coli, GI226510960, Length=346, Percent_Identity=26.3005780346821, Blast_Score=93, Evalue=3e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018110
- InterPro:   IPR013342
- InterPro:   IPR013341
- InterPro:   IPR001354 [H]

Pfam domain/function: PF01188 MR_MLE; PF02746 MR_MLE_N [H]

EC number: =4.2.1.6 [H]

Molecular weight: Translated: 44729; Mature: 44729

Theoretical pI: Translated: 5.26; Mature: 5.26

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRIREIEPIVLTSKEKGSATWASIMIVTRVITENGEVGYGEAVPTLRVISVYNAIKQVSK
CCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
AYIGKEVEEVEKNYHEWYKQDFYLARSFESATAVSAIDIASWDIIGKELGAPIHKLLGGK
HHHCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHCCC
TRDRVPVYANGWYQDCVTPEEFAEKAKDVVKMGYKALKFDPFGPYYDWIDERGLREAEER
CCCCCCEEECCCHHHCCCHHHHHHHHHHHHHHCCHHEECCCCCCHHHHHHHCCHHHHHHH
VKAVREAVGDNVDILIEHHGRFNANSAIMIAKRLEKYNPGFMEEPVHHEDVIGLRKYKAS
HHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCC
THLRVALGERLISEKETAFYVEEGLVNILQPDLTNIGGVTVGRSVIKIAEANDVEVAFHN
CHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHCCCCHHHHHHHHEEECCCCEEEEEEH
AFGSIQNAVEIQLSAVTQNLYLLENFYDWFPQWKRDLVYNETPVEGGHVKVPYKPGLGVS
HHHHHHHHHEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCC
INEKIIEQLRAEPIPLDVIEEPVWVVKGTWKNYGV
CCHHHHHHHCCCCCCHHHHCCCEEEEEECCCCCCC
>Mature Secondary Structure
MRIREIEPIVLTSKEKGSATWASIMIVTRVITENGEVGYGEAVPTLRVISVYNAIKQVSK
CCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
AYIGKEVEEVEKNYHEWYKQDFYLARSFESATAVSAIDIASWDIIGKELGAPIHKLLGGK
HHHCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHCCC
TRDRVPVYANGWYQDCVTPEEFAEKAKDVVKMGYKALKFDPFGPYYDWIDERGLREAEER
CCCCCCEEECCCHHHCCCHHHHHHHHHHHHHHCCHHEECCCCCCHHHHHHHCCHHHHHHH
VKAVREAVGDNVDILIEHHGRFNANSAIMIAKRLEKYNPGFMEEPVHHEDVIGLRKYKAS
HHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCC
THLRVALGERLISEKETAFYVEEGLVNILQPDLTNIGGVTVGRSVIKIAEANDVEVAFHN
CHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHCCCCHHHHHHHHEEECCCCEEEEEEH
AFGSIQNAVEIQLSAVTQNLYLLENFYDWFPQWKRDLVYNETPVEGGHVKVPYKPGLGVS
HHHHHHHHHEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCC
INEKIIEQLRAEPIPLDVIEEPVWVVKGTWKNYGV
CCHHHHHHHCCCCCCHHHHCCCEEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA