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The map label for this gene is yodB [H]

Identifier: 15899879

GI number: 15899879

Start: 2922727

End: 2923095

Strand: Direct

Name: yodB [H]

Synonym: SSO3176

Alternate gene names: 15899879

Gene position: 2922727-2923095 (Clockwise)

Preceding gene: 15899878

Following gene: 15899880

Centisome position: 97.68

GC content: 34.42

Gene sequence:

>369_bases
ATGAGAGTTTCTAAATCAAAAAAACCTACTGAAATATGCCCAATAGTTTCCGCGATAGCTATAATTGGAAGCGAACCAAA
GCTTTTAACAATAAGGTACTTACTTGATGGACCTAAACGATTCAACGAACTTCAAAGGCTTACCTCATTAAGCTCTAAAA
CTCTATCAAAGACCTTAAAAGAATTGGAAAATCATGGAATAGTTGAGAGAAAGATTATAAACTCCCATCCAATTGTAGCA
GTTTACGAATTAACAGATAAGGGTAAGGATCTGAAGAGAGTATTTGATGAACTCAGAAGATGGGGAGAAAAATTCGCTCT
AACCAAAATTGCTGTAATGAATAGTATACGCGTAAACCAAGAGTTTTAA

Upstream 100 bases:

>100_bases
ATAGTTATAATCTTGTTAGTGATTGCATCAATATTTACAATAAGGAAAAGAAGGTCGTAATAGATAAAATATATAAGACG
TACTTCGTTAAGTGTAAATA

Downstream 100 bases:

>100_bases
AATCAAAATGAAATAGTTGAAAGAATAAAATAAAGGACTATTTACTGATGGAAATATTATGATATAATTAAAAGAACGAG
ATACAAATTCCATTCCAAAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 122; Mature: 122

Protein sequence:

>122_residues
MRVSKSKKPTEICPIVSAIAIIGSEPKLLTIRYLLDGPKRFNELQRLTSLSSKTLSKTLKELENHGIVERKIINSHPIVA
VYELTDKGKDLKRVFDELRRWGEKFALTKIAVMNSIRVNQEF

Sequences:

>Translated_122_residues
MRVSKSKKPTEICPIVSAIAIIGSEPKLLTIRYLLDGPKRFNELQRLTSLSSKTLSKTLKELENHGIVERKIINSHPIVA
VYELTDKGKDLKRVFDELRRWGEKFALTKIAVMNSIRVNQEF
>Mature_122_residues
MRVSKSKKPTEICPIVSAIAIIGSEPKLLTIRYLLDGPKRFNELQRLTSLSSKTLSKTLKELENHGIVERKIINSHPIVA
VYELTDKGKDLKRVFDELRRWGEKFALTKIAVMNSIRVNQEF

Specific function: Negatively regulates yodC and azoR1 which may contribute to the degradation of aromatic compounds. Probably positively regulates the catechol-specific transcription of mhqNOP, mhqED, and mhqA [H]

COG id: COG1733

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH hxlR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002577
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01638 DUF24 [H]

EC number: NA

Molecular weight: Translated: 13978; Mature: 13978

Theoretical pI: Translated: 10.60; Mature: 10.60

Prosite motif: PS51118 HTH_HXLR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRVSKSKKPTEICPIVSAIAIIGSEPKLLTIRYLLDGPKRFNELQRLTSLSSKTLSKTLK
CCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
ELENHGIVERKIINSHPIVAVYELTDKGKDLKRVFDELRRWGEKFALTKIAVMNSIRVNQ
HHHHCCCHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
EF
CC
>Mature Secondary Structure
MRVSKSKKPTEICPIVSAIAIIGSEPKLLTIRYLLDGPKRFNELQRLTSLSSKTLSKTLK
CCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
ELENHGIVERKIINSHPIVAVYELTDKGKDLKRVFDELRRWGEKFALTKIAVMNSIRVNQ
HHHHCCCHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
EF
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9734814; 9384377 [H]