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The map label for this gene is galS [H]

Identifier: 15899832

GI number: 15899832

Start: 2876706

End: 2878655

Strand: Reverse

Name: galS [H]

Synonym: SSO3127

Alternate gene names: 15899832

Gene position: 2878655-2876706 (Counterclockwise)

Preceding gene: 15899833

Following gene: 15899830

Centisome position: 96.2

GC content: 36.05

Gene sequence:

>1950_bases
ATGATGATTTGGATAGAAGACGAGAATGGGAATAAATATCAGTGTGACAGTAACGGAAATTGCGAGAATTTAGCAATAGT
TAAGGTTAATACAAAAGAGTATAACAATGACGGTAAAATATACAGCATAGAGGGGAAGTCATTTGTCAAACTATCTAAAT
TTCCCATTACATTAAAGCTTAACCTGAAGGCTGATCAGATTCTCTCACTAACTACTCAGCAAATTTACTCTGAAGTATAT
GGGAAAGCCTTTACGTATTATAATCAATTGGCAATAGACATGGAACCCGTCACTGAACCTCCTAAAGAGTTAAAGTATGA
TATTAAAAGCCTTGACCATGAAAAGTACATAAGGACATATCCGTGCTGGCTTTATCCCGTCTTTAACAATATTCCAGATT
ACACTGTTTTTGCGTTAGTTAAGAGTGGAAATTCCTATGAAGCGTTCTTCACACTTTCTAACAATTACGTTACGGCATAT
CTTTTTGGAGACTCAGTTAGACTCTACACTGGTTTTAATACTGACGAAATTAAGAGGAGTTATTTCCTCTCTATTGGTAC
TTCAGATAATCCGTATAAGGCGATAGAGAATGCAATAAATATTGCGTCAAAAGAAACTTTTACTTTCAAATTGAGAAAGG
AAAAGGGATTTCCGGACAAAGTAATGAATGGGCTAGGATGGTGTAGTTGGAATGCGTTTTTAACTAAAGATCTCAATGAG
GAGAATTTGATTAAAGTTGTAAAGGGGATAATCGAAAGGGGACTGAGGTTAAATTGGGTAATAATAGATGATGGTTGGCA
AGACCAAAATAACGATAGGGCGATAAGGAGTTTAAATCCTGACAACAAGAAATTCCCAAATGGATTTAAAAATACTGTAA
GAGCAATAAAGTCTTTAGGTGTTAAATATGTTGGTCTATGGCACGCCATAAATGCGCATTGGGGAGGGATGTCTCAAGAG
TTAATGAAATCACTCAACGTTAATGGATATTTCACCAATTTCCTCAATAGTTACGTACCATCTCCAAATCTTGAGGATGC
AATAGGTTTTTACAAAGCCTTTGATGGAAATATCTTAAGGGACTTCGATCTCGTTAAGGTTGATAATCAATGGGTAATTC
ACGCAATATATGATAGCTTCCCAATAGGTCTAGCTAGTAGGAATATTCAAATTGCTTTGCAATATTCAGTAGGGAAGGAC
GTTATAAACTGCATGTCAATGAATCCTGAAAATTATTGTAACTATTTTTATAGTAATGTGATGAGGAATTCTATAGACTA
CGTACCCTTCTGGAAGGATGGGACAAAACTTCACATTATGTTTAATGCTTATAATTCCTTGTTAACATCTCATATAGTTT
ATCCAGATTACGATATGTTCATGTCTTATGATCCCTACGCAAAGGTTCATCTAGTTGCAAGAGTTTTCAGCGGAGGGCCA
ATTTATATAACGGATAGACATCCAGAGAGGACAAACATCGAACTGCTGAGAATGGCAGTCCTCCCAAATGGTGAAGTTAT
TAGAGTAGATGAGCCGGCTTTAATAACTGAGGATTTATTGTTTAAAGACCCATTAAGGGAAAGGGTTTTATTGAAGCTCA
AGGGTAAGGTAAAGGGGTATAACGCCATTGCTTTCTTTAACTTAAATAGTGGTGAGGTAGAGGAAGAGTATAATAATAAC
GAGGACTATTACTACTACAAAGTATTCTCTGGGGAATTCGGAGTAGGTAAATTTAATGTTAAGCTAAGAGAGCTTGACGC
CGAGGTTGTTATTACTTTTCCGAAGAGTAACAGAGTAATAGGTTTAAGAGAGTATATTTTACCACCATTTACTGTAATAG
TCAGTGATAACGTAGTAATTCCTAAGGCAGATGGCACATTACTATATGTCAAAGACACTGAACTAAACGAAGTTAAGGCG
AGGGAAGGAATCCCAGTTACTATAGAATGA

Upstream 100 bases:

>100_bases
ATATTATAGTGGTGATAATTTTCCCAATTTTTGTCAAATCGGACAACGTTATGAGCGTTATAGGGTAAAGTACTTTTATA
CATAATGATGAATTACTATT

Downstream 100 bases:

>100_bases
GATTTATTTTTGAACAGTAATATCATTTCCATACAAATACGCTTTCATGAACGCTCATGAGAGATTAATCCTCAAAGGGG
ACACTCTTGTAAAATTTCAT

Product: raffinose synthase (Sip1 seed imbibition) protein

Products: NA

Alternate protein names: Alpha-Gal [H]

Number of amino acids: Translated: 649; Mature: 649

Protein sequence:

>649_residues
MMIWIEDENGNKYQCDSNGNCENLAIVKVNTKEYNNDGKIYSIEGKSFVKLSKFPITLKLNLKADQILSLTTQQIYSEVY
GKAFTYYNQLAIDMEPVTEPPKELKYDIKSLDHEKYIRTYPCWLYPVFNNIPDYTVFALVKSGNSYEAFFTLSNNYVTAY
LFGDSVRLYTGFNTDEIKRSYFLSIGTSDNPYKAIENAINIASKETFTFKLRKEKGFPDKVMNGLGWCSWNAFLTKDLNE
ENLIKVVKGIIERGLRLNWVIIDDGWQDQNNDRAIRSLNPDNKKFPNGFKNTVRAIKSLGVKYVGLWHAINAHWGGMSQE
LMKSLNVNGYFTNFLNSYVPSPNLEDAIGFYKAFDGNILRDFDLVKVDNQWVIHAIYDSFPIGLASRNIQIALQYSVGKD
VINCMSMNPENYCNYFYSNVMRNSIDYVPFWKDGTKLHIMFNAYNSLLTSHIVYPDYDMFMSYDPYAKVHLVARVFSGGP
IYITDRHPERTNIELLRMAVLPNGEVIRVDEPALITEDLLFKDPLRERVLLKLKGKVKGYNAIAFFNLNSGEVEEEYNNN
EDYYYYKVFSGEFGVGKFNVKLRELDAEVVITFPKSNRVIGLREYILPPFTVIVSDNVVIPKADGTLLYVKDTELNEVKA
REGIPVTIE

Sequences:

>Translated_649_residues
MMIWIEDENGNKYQCDSNGNCENLAIVKVNTKEYNNDGKIYSIEGKSFVKLSKFPITLKLNLKADQILSLTTQQIYSEVY
GKAFTYYNQLAIDMEPVTEPPKELKYDIKSLDHEKYIRTYPCWLYPVFNNIPDYTVFALVKSGNSYEAFFTLSNNYVTAY
LFGDSVRLYTGFNTDEIKRSYFLSIGTSDNPYKAIENAINIASKETFTFKLRKEKGFPDKVMNGLGWCSWNAFLTKDLNE
ENLIKVVKGIIERGLRLNWVIIDDGWQDQNNDRAIRSLNPDNKKFPNGFKNTVRAIKSLGVKYVGLWHAINAHWGGMSQE
LMKSLNVNGYFTNFLNSYVPSPNLEDAIGFYKAFDGNILRDFDLVKVDNQWVIHAIYDSFPIGLASRNIQIALQYSVGKD
VINCMSMNPENYCNYFYSNVMRNSIDYVPFWKDGTKLHIMFNAYNSLLTSHIVYPDYDMFMSYDPYAKVHLVARVFSGGP
IYITDRHPERTNIELLRMAVLPNGEVIRVDEPALITEDLLFKDPLRERVLLKLKGKVKGYNAIAFFNLNSGEVEEEYNNN
EDYYYYKVFSGEFGVGKFNVKLRELDAEVVITFPKSNRVIGLREYILPPFTVIVSDNVVIPKADGTLLYVKDTELNEVKA
REGIPVTIE
>Mature_649_residues
MMIWIEDENGNKYQCDSNGNCENLAIVKVNTKEYNNDGKIYSIEGKSFVKLSKFPITLKLNLKADQILSLTTQQIYSEVY
GKAFTYYNQLAIDMEPVTEPPKELKYDIKSLDHEKYIRTYPCWLYPVFNNIPDYTVFALVKSGNSYEAFFTLSNNYVTAY
LFGDSVRLYTGFNTDEIKRSYFLSIGTSDNPYKAIENAINIASKETFTFKLRKEKGFPDKVMNGLGWCSWNAFLTKDLNE
ENLIKVVKGIIERGLRLNWVIIDDGWQDQNNDRAIRSLNPDNKKFPNGFKNTVRAIKSLGVKYVGLWHAINAHWGGMSQE
LMKSLNVNGYFTNFLNSYVPSPNLEDAIGFYKAFDGNILRDFDLVKVDNQWVIHAIYDSFPIGLASRNIQIALQYSVGKD
VINCMSMNPENYCNYFYSNVMRNSIDYVPFWKDGTKLHIMFNAYNSLLTSHIVYPDYDMFMSYDPYAKVHLVARVFSGGP
IYITDRHPERTNIELLRMAVLPNGEVIRVDEPALITEDLLFKDPLRERVLLKLKGKVKGYNAIAFFNLNSGEVEEEYNNN
EDYYYYKVFSGEFGVGKFNVKLRELDAEVVITFPKSNRVIGLREYILPPFTVIVSDNVVIPKADGTLLYVKDTELNEVKA
REGIPVTIE

Specific function: Involved in the degradation of various alpha-linked galactosides such as raffinose, stachyose and melibiose [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 36 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR017853
- InterPro:   IPR008811 [H]

Pfam domain/function: PF05691 Raffinose_syn [H]

EC number: =3.2.1.22 [H]

Molecular weight: Translated: 74699; Mature: 74699

Theoretical pI: Translated: 5.97; Mature: 5.97

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMIWIEDENGNKYQCDSNGNCENLAIVKVNTKEYNNDGKIYSIEGKSFVKLSKFPITLKL
CEEEEECCCCCEEEECCCCCCCEEEEEEEECCEECCCCCEEEECCCCEEEEECCEEEEEE
NLKADQILSLTTQQIYSEVYGKAFTYYNQLAIDMEPVTEPPKELKYDIKSLDHEKYIRTY
ECCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCCCCCHHHHHHHHHHCCCCHHHEEC
PCWLYPVFNNIPDYTVFALVKSGNSYEAFFTLSNNYVTAYLFGDSVRLYTGFNTDEIKRS
CEEEEEHHCCCCCEEEEEEEECCCCEEEEEEEECCEEEEEEEECEEEEEECCCHHHCCEE
YFLSIGTSDNPYKAIENAINIASKETFTFKLRKEKGFPDKVMNGLGWCSWNAFLTKDLNE
EEEEECCCCCHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHCCCEEEECEEEECCCCH
ENLIKVVKGIIERGLRLNWVIIDDGWQDQNNDRAIRSLNPDNKKFPNGFKNTVRAIKSLG
HHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHCC
VKYVGLWHAINAHWGGMSQELMKSLNVNGYFTNFLNSYVPSPNLEDAIGFYKAFDGNILR
CEEEEEEEEECCCCCCCHHHHHHHCCCCEEEHHHHHHHCCCCCHHHHHHHHHHCCCCEEE
DFDLVKVDNQWVIHAIYDSFPIGLASRNIQIALQYSVGKDVINCMSMNPENYCNYFYSNV
CEEEEEECCCEEEEEEECCCCCCEECCCEEEEEEECCCHHHHHHHCCCHHHHHHHHHHHH
MRNSIDYVPFWKDGTKLHIMFNAYNSLLTSHIVYPDYDMFMSYDPYAKVHLVARVFSGGP
HHCCCCCCEEECCCCEEEEEEECHHHHHHHCCCCCCHHHEEECCCCHHEEEEEEHHCCCE
IYITDRHPERTNIELLRMAVLPNGEVIRVDEPALITEDLLFKDPLRERVLLKLKGKVKGY
EEEECCCCCCCCEEEEEEEECCCCCEEEECCCCEEHHHHHHHCCHHHEEEEEEECCCCCE
NAIAFFNLNSGEVEEEYNNNEDYYYYKVFSGEFGVGKFNVKLRELDAEVVITFPKSNRVI
EEEEEEECCCCCCHHHCCCCCCEEEEEEEECCCCCEEEEEEEEEECCEEEEEECCCCCEE
GLREYILPPFTVIVSDNVVIPKADGTLLYVKDTELNEVKAREGIPVTIE
EEHHHCCCCEEEEEECCEEEECCCCEEEEEECCCCCHHHHCCCCCEEEC
>Mature Secondary Structure
MMIWIEDENGNKYQCDSNGNCENLAIVKVNTKEYNNDGKIYSIEGKSFVKLSKFPITLKL
CEEEEECCCCCEEEECCCCCCCEEEEEEEECCEECCCCCEEEECCCCEEEEECCEEEEEE
NLKADQILSLTTQQIYSEVYGKAFTYYNQLAIDMEPVTEPPKELKYDIKSLDHEKYIRTY
ECCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCCCCCHHHHHHHHHHCCCCHHHEEC
PCWLYPVFNNIPDYTVFALVKSGNSYEAFFTLSNNYVTAYLFGDSVRLYTGFNTDEIKRS
CEEEEEHHCCCCCEEEEEEEECCCCEEEEEEEECCEEEEEEEECEEEEEECCCHHHCCEE
YFLSIGTSDNPYKAIENAINIASKETFTFKLRKEKGFPDKVMNGLGWCSWNAFLTKDLNE
EEEEECCCCCHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHCCCEEEECEEEECCCCH
ENLIKVVKGIIERGLRLNWVIIDDGWQDQNNDRAIRSLNPDNKKFPNGFKNTVRAIKSLG
HHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHCC
VKYVGLWHAINAHWGGMSQELMKSLNVNGYFTNFLNSYVPSPNLEDAIGFYKAFDGNILR
CEEEEEEEEECCCCCCCHHHHHHHCCCCEEEHHHHHHHCCCCCHHHHHHHHHHCCCCEEE
DFDLVKVDNQWVIHAIYDSFPIGLASRNIQIALQYSVGKDVINCMSMNPENYCNYFYSNV
CEEEEEECCCEEEEEEECCCCCCEECCCEEEEEEECCCHHHHHHHCCCHHHHHHHHHHHH
MRNSIDYVPFWKDGTKLHIMFNAYNSLLTSHIVYPDYDMFMSYDPYAKVHLVARVFSGGP
HHCCCCCCEEECCCCEEEEEEECHHHHHHHCCCCCCHHHEEECCCCHHEEEEEEHHCCCE
IYITDRHPERTNIELLRMAVLPNGEVIRVDEPALITEDLLFKDPLRERVLLKLKGKVKGY
EEEECCCCCCCCEEEEEEEECCCCCEEEECCCCEEHHHHHHHCCHHHEEEEEEECCCCCE
NAIAFFNLNSGEVEEEYNNNEDYYYYKVFSGEFGVGKFNVKLRELDAEVVITFPKSNRVI
EEEEEEECCCCCCHHHCCCCCCEEEEEEEECCCCCEEEEEEEEEECCEEEEEECCCCCEE
GLREYILPPFTVIVSDNVVIPKADGTLLYVKDTELNEVKAREGIPVTIE
EEHHHCCCCEEEEEECCEEEECCCCEEEEEECCCCCHHHHCCCCCEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11427726 [H]