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The map label for this gene is ygcS [H]

Identifier: 15899827

GI number: 15899827

Start: 2869777

End: 2871228

Strand: Reverse

Name: ygcS [H]

Synonym: SSO3120

Alternate gene names: 15899827

Gene position: 2871228-2869777 (Counterclockwise)

Preceding gene: 15899829

Following gene: 15899825

Centisome position: 95.96

GC content: 37.05

Gene sequence:

>1452_bases
ATGTATGATTATTCTGATGGAGAGAGTATGTCACAATACTCTAAAGAAGAAATAGATAGGGGTATCAAAAAGATATATGA
TACGGTTTTGAATACAAAAAATATAACCTCAAGATATATAGTAATTTTAGCATTAGCTAGTCTCTGGCTAGATGCCTATG
ACTTCGCAAGTATGACTTTTGGTACTGCATCCCTTAAGAGCACTTTCCCTTCTGTACCATCTGTTTTAATTTCCTTGGCT
ATAGGTGCAGTACAATTAGGTGCTATTATAGGTGCAGTGGTTGGCGGTTGGCTAAACGATCGTATTGGTAGGAGGAACAT
GTTCATACTTAACATGATATTATTTACGGGTATGGCAATCTTGGGAGGATTATCTACTAACATTTTAGAATTATCAATCT
TTAGAGGCTTATTAGGTTTCGCTTTAGGGGCTGATACTGCAACAGGTTTTGCTTATATATTCGAGTATTTAGAGAAAAAA
CAGAGACTATTTTGGTCGAATCTATGGCAAATACAATGGTATATCATGTACGAGGTTACCATAGCTTTAATAGTAGTTCC
ATTCTTCTTTACAGTTCACTCATTGACATCTCCCTTATTATGGAGAATTATTATGATAGTTGGAGGTGTTCTAGCTTTAG
TAATATTACTACTAAGAGGTAGGATTCCAGAATCGGTATTATGGTTAGCATACCAAGGTAGATTAGCTACTGCCAAGAAA
ATATTGAAACAGACCTACGGAATAGATTTGCCAGAGGTCCCAGACGTAGATTTGCAATTAAGGGCACCAGCTAGAGGAGT
AAGGAGTGCCTTTAGTATATTTAGAGCGAGTAAATGGAGGGAGCTGGTCTATTCCTTTAACGGTAACTTTGAACAAGGAT
TCATATTCTATACATTTGGTTTTTATGTACCTTATATATTACTAGCGCTAAAACTGGCTGGGCCACTTGCCTCAATAGTA
GCTTCTGCATTCCTATATGCCGGAGGCGTAATAGGTGGCTATTTGACAGCATGGCTAACACCTAAAATTGGTACTAAATC
ACAATATGTAATAGGAGCAATAGGTGAGGGAATTTCAGTAGGGTTAATTGCACTTACGTATATTTATCACTTACCACTAA
TATATTTTGTAGTGTTCTCTTTCCTATTTTACTTCTTCCATGTCATAGGTCCAGCCAGTCAAGGGATGACATCCATAAAT
GCATTTTTTGGAGCCAAAGAAAGAGGTACTGCTGCGGGATGGGGATATTTCTGGGTAAAATTGGCTGCTTTTATAGGATT
GCTAATAGGAATTGTTGGTATCGCATATAACCCAGTTTCCTTGACATTAGGTTTGGCAATTTATGGTGTATTAACAGGAA
TAGTAGGGTTAATAATAGGTTATGATACAAGGACATACAAATTAGCAGATGTGGAAGAATTAGGAGAGAATCCACAAGAG
AGTGTACAGTAG

Upstream 100 bases:

>100_bases
TGAGTAAAGCTATCCCCATAAAAATCAAGCTATGTTTCTACAAAAATAAAGGATAGTAAGAATCTTTACTGGTAAAGCTA
TCTATTTAAATATTTCCTTA

Downstream 100 bases:

>100_bases
TTAATTTTAATAATAATAAAAACTAAGTTATTTTTCTTCTTTTTTTAACTGGAGTTATGAGTGTCCCGATATTACTTATA
GTTATTTCCACGATGTCCTC

Product: metabolite transport protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 483; Mature: 483

Protein sequence:

>483_residues
MYDYSDGESMSQYSKEEIDRGIKKIYDTVLNTKNITSRYIVILALASLWLDAYDFASMTFGTASLKSTFPSVPSVLISLA
IGAVQLGAIIGAVVGGWLNDRIGRRNMFILNMILFTGMAILGGLSTNILELSIFRGLLGFALGADTATGFAYIFEYLEKK
QRLFWSNLWQIQWYIMYEVTIALIVVPFFFTVHSLTSPLLWRIIMIVGGVLALVILLLRGRIPESVLWLAYQGRLATAKK
ILKQTYGIDLPEVPDVDLQLRAPARGVRSAFSIFRASKWRELVYSFNGNFEQGFIFYTFGFYVPYILLALKLAGPLASIV
ASAFLYAGGVIGGYLTAWLTPKIGTKSQYVIGAIGEGISVGLIALTYIYHLPLIYFVVFSFLFYFFHVIGPASQGMTSIN
AFFGAKERGTAAGWGYFWVKLAAFIGLLIGIVGIAYNPVSLTLGLAIYGVLTGIVGLIIGYDTRTYKLADVEELGENPQE
SVQ

Sequences:

>Translated_483_residues
MYDYSDGESMSQYSKEEIDRGIKKIYDTVLNTKNITSRYIVILALASLWLDAYDFASMTFGTASLKSTFPSVPSVLISLA
IGAVQLGAIIGAVVGGWLNDRIGRRNMFILNMILFTGMAILGGLSTNILELSIFRGLLGFALGADTATGFAYIFEYLEKK
QRLFWSNLWQIQWYIMYEVTIALIVVPFFFTVHSLTSPLLWRIIMIVGGVLALVILLLRGRIPESVLWLAYQGRLATAKK
ILKQTYGIDLPEVPDVDLQLRAPARGVRSAFSIFRASKWRELVYSFNGNFEQGFIFYTFGFYVPYILLALKLAGPLASIV
ASAFLYAGGVIGGYLTAWLTPKIGTKSQYVIGAIGEGISVGLIALTYIYHLPLIYFVVFSFLFYFFHVIGPASQGMTSIN
AFFGAKERGTAAGWGYFWVKLAAFIGLLIGIVGIAYNPVSLTLGLAIYGVLTGIVGLIIGYDTRTYKLADVEELGENPQE
SVQ
>Mature_483_residues
MYDYSDGESMSQYSKEEIDRGIKKIYDTVLNTKNITSRYIVILALASLWLDAYDFASMTFGTASLKSTFPSVPSVLISLA
IGAVQLGAIIGAVVGGWLNDRIGRRNMFILNMILFTGMAILGGLSTNILELSIFRGLLGFALGADTATGFAYIFEYLEKK
QRLFWSNLWQIQWYIMYEVTIALIVVPFFFTVHSLTSPLLWRIIMIVGGVLALVILLLRGRIPESVLWLAYQGRLATAKK
ILKQTYGIDLPEVPDVDLQLRAPARGVRSAFSIFRASKWRELVYSFNGNFEQGFIFYTFGFYVPYILLALKLAGPLASIV
ASAFLYAGGVIGGYLTAWLTPKIGTKSQYVIGAIGEGISVGLIALTYIYHLPLIYFVVFSFLFYFFHVIGPASQGMTSIN
AFFGAKERGTAAGWGYFWVKLAAFIGLLIGIVGIAYNPVSLTLGLAIYGVLTGIVGLIIGYDTRTYKLADVEELGENPQE
SVQ

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family [H]

Homologues:

Organism=Escherichia coli, GI87082159, Length=250, Percent_Identity=29.6, Blast_Score=77, Evalue=3e-15,
Organism=Escherichia coli, GI1786229, Length=340, Percent_Identity=25.2941176470588, Blast_Score=76, Evalue=5e-15,
Organism=Escherichia coli, GI1788074, Length=181, Percent_Identity=30.3867403314917, Blast_Score=71, Evalue=2e-13,
Organism=Escherichia coli, GI1788068, Length=414, Percent_Identity=23.1884057971014, Blast_Score=67, Evalue=2e-12,
Organism=Drosophila melanogaster, GI221330907, Length=250, Percent_Identity=25.2, Blast_Score=66, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR016196
- InterPro:   IPR005828
- InterPro:   IPR005829 [H]

Pfam domain/function: PF00083 Sugar_tr [H]

EC number: NA

Molecular weight: Translated: 53321; Mature: 53321

Theoretical pI: Translated: 9.28; Mature: 9.28

Prosite motif: PS50850 MFS ; PS00217 SUGAR_TRANSPORT_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYDYSDGESMSQYSKEEIDRGIKKIYDTVLNTKNITSRYIVILALASLWLDAYDFASMTF
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
GTASLKSTFPSVPSVLISLAIGAVQLGAIIGAVVGGWLNDRIGRRNMFILNMILFTGMAI
CHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
LGGLSTNILELSIFRGLLGFALGADTATGFAYIFEYLEKKQRLFWSNLWQIQWYIMYEVT
HCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IALIVVPFFFTVHSLTSPLLWRIIMIVGGVLALVILLLRGRIPESVLWLAYQGRLATAKK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHH
ILKQTYGIDLPEVPDVDLQLRAPARGVRSAFSIFRASKWRELVYSFNGNFEQGFIFYTFG
HHHHHHCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEHH
FYVPYILLALKLAGPLASIVASAFLYAGGVIGGYLTAWLTPKIGTKSQYVIGAIGEGISV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCHHH
GLIALTYIYHLPLIYFVVFSFLFYFFHVIGPASQGMTSINAFFGAKERGTAAGWGYFWVK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHH
LAAFIGLLIGIVGIAYNPVSLTLGLAIYGVLTGIVGLIIGYDTRTYKLADVEELGENPQE
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCHHHHCCCCHH
SVQ
HCC
>Mature Secondary Structure
MYDYSDGESMSQYSKEEIDRGIKKIYDTVLNTKNITSRYIVILALASLWLDAYDFASMTF
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
GTASLKSTFPSVPSVLISLAIGAVQLGAIIGAVVGGWLNDRIGRRNMFILNMILFTGMAI
CHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
LGGLSTNILELSIFRGLLGFALGADTATGFAYIFEYLEKKQRLFWSNLWQIQWYIMYEVT
HCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IALIVVPFFFTVHSLTSPLLWRIIMIVGGVLALVILLLRGRIPESVLWLAYQGRLATAKK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHH
ILKQTYGIDLPEVPDVDLQLRAPARGVRSAFSIFRASKWRELVYSFNGNFEQGFIFYTFG
HHHHHHCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEHH
FYVPYILLALKLAGPLASIVASAFLYAGGVIGGYLTAWLTPKIGTKSQYVIGAIGEGISV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCHHH
GLIALTYIYHLPLIYFVVFSFLFYFFHVIGPASQGMTSINAFFGAKERGTAAGWGYFWVK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHH
LAAFIGLLIGIVGIAYNPVSLTLGLAIYGVLTGIVGLIIGYDTRTYKLADVEELGENPQE
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCHHHHCCCCHH
SVQ
HCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]