Click here to switch to the map view.

The map label for this gene is nodC [H]

Identifier: 15899710

GI number: 15899710

Start: 2741925

End: 2743337

Strand: Reverse

Name: nodC [H]

Synonym: SSO3002

Alternate gene names: 15899710

Gene position: 2743337-2741925 (Counterclockwise)

Preceding gene: 15899711

Following gene: 15899709

Centisome position: 91.68

GC content: 33.47

Gene sequence:

>1413_bases
GTGAAAATCTTTTATATTAATGCGTTTATAGTTAATACTCGGACTTATATGAGACTTGACTTTACACTTTATTTGCTCAT
CTCTTCGCTCATTTCCATTTTTACTATTCTATATATCTCATTTACCTTACCCCTTGCATTTACATATAAACCAAAGTCCT
CCCAAACTAATATAAAAAGGAGCGAAATTACTGTATTAATTCCAGTTTATAAAGAGGATGTTGATGTGTTTAAGGAAGTT
ATAAATTCCGTTAAAAAACAAGATCTGAATTTTGTTGTTGTTGGAGATGGGTGTGATGAACCATATAAAAGTATAACCAT
ATCAAAAGGAGGTTTGTTCGTTAAGTTGGATAAGAACATGGGTAAAAGGAGGGCAATAAGAGAAGGATTCAAATACGTTA
AAACCCCGTATGTCTTACTTTTAGATAGTGACACAATACTCCCGGATAACTCTATTGATATACTATCCTCTAAATTAGCT
GGGGATATAGTTGCTGTTAGCCCAGAGATTTCGATATTGCCAGGCAGAAATAAGGTAACTTTCCACATTTCAGAGATGAT
GCAAAGATTAAGGGAAATAAGTTATAGGGCATTGGCTAGATTTGGTAGTATAGTATCACTTAATGGTCAATGCATACTAG
CTAAAACTGATGTAATAAAATCGCTAGTTGAGTCTGAGGAATTTAATAGTGTTAAATTATGGAGGTTCTCTACAATTCTA
GGTGATGATAGACAAATAACCAATTACATCTATTCAAAGGGATATAAGGCAACGGTTACCAATGATGTAGTAGTCAAGAC
TAAGGCACCGGATACAATTAGGGATTTGTTAAAACAAATGGTGAGATGGTATAGATCTAATAACTTCTTCCTAATCAAAG
AGATAGGTGATGGTACAATCATTAAAAAGGGTTTCTTTTACATGTTTACAGTACTATACTGGTATGCGTTACCTTTACTT
ACATTACTGAGCTATAGCTTATATACTGAAATAATTTTGTCACACGCAATTAAACATTGGAATTTCATTGTTAGGGCAAT
TACGACAGACCCAGCTAGGTTCATAGAAAACGTCATAATATCTAGAATTGATAGGTTATTCAATATAGATCCCACGCCTA
TTGCTAATAAATTTCACCATTTTCTTCCACATCACTTTAATCCTATTATGTTAATTTACGACAATAAACTGAGTGCAAAA
ATGATACTATTCCATTATTTCTATGTTTTCCATACACTTGTGGGCGAAGTATCAGCCATAGTTAGCATAGTAATGATTAT
TTCCATCCTATTATATACGAGGAAAATAAGGGGATTTGCTTTAGGTCTATTGGCATTTCCGTTAATGTTCTTAGCAGATA
TATTCGCCCTTATGACCATATGGAGACAAAAGAAGTGGTCTGGACGTAACTGA

Upstream 100 bases:

>100_bases
TATATAGATTATGTATTTATGTGTTCGAGAAATATTCAATAAAAATATTCAAACAAATGTAGTATAAGGGACTACTATAT
CGAGCAGAAAAGAAAAATTA

Downstream 100 bases:

>100_bases
AATTCAAACTCTCCACTATTTTTATTTCACCATCCAGATACTCCGATAAAACACAAACTTTATACTTTTCTAAACATAGT
AGAGTCGGAGTGAAAGAAAA

Product: glycosyltransferase

Products: NA

Alternate protein names: Nodulation protein C [H]

Number of amino acids: Translated: 470; Mature: 470

Protein sequence:

>470_residues
MKIFYINAFIVNTRTYMRLDFTLYLLISSLISIFTILYISFTLPLAFTYKPKSSQTNIKRSEITVLIPVYKEDVDVFKEV
INSVKKQDLNFVVVGDGCDEPYKSITISKGGLFVKLDKNMGKRRAIREGFKYVKTPYVLLLDSDTILPDNSIDILSSKLA
GDIVAVSPEISILPGRNKVTFHISEMMQRLREISYRALARFGSIVSLNGQCILAKTDVIKSLVESEEFNSVKLWRFSTIL
GDDRQITNYIYSKGYKATVTNDVVVKTKAPDTIRDLLKQMVRWYRSNNFFLIKEIGDGTIIKKGFFYMFTVLYWYALPLL
TLLSYSLYTEIILSHAIKHWNFIVRAITTDPARFIENVIISRIDRLFNIDPTPIANKFHHFLPHHFNPIMLIYDNKLSAK
MILFHYFYVFHTLVGEVSAIVSIVMIISILLYTRKIRGFALGLLAFPLMFLADIFALMTIWRQKKWSGRN

Sequences:

>Translated_470_residues
MKIFYINAFIVNTRTYMRLDFTLYLLISSLISIFTILYISFTLPLAFTYKPKSSQTNIKRSEITVLIPVYKEDVDVFKEV
INSVKKQDLNFVVVGDGCDEPYKSITISKGGLFVKLDKNMGKRRAIREGFKYVKTPYVLLLDSDTILPDNSIDILSSKLA
GDIVAVSPEISILPGRNKVTFHISEMMQRLREISYRALARFGSIVSLNGQCILAKTDVIKSLVESEEFNSVKLWRFSTIL
GDDRQITNYIYSKGYKATVTNDVVVKTKAPDTIRDLLKQMVRWYRSNNFFLIKEIGDGTIIKKGFFYMFTVLYWYALPLL
TLLSYSLYTEIILSHAIKHWNFIVRAITTDPARFIENVIISRIDRLFNIDPTPIANKFHHFLPHHFNPIMLIYDNKLSAK
MILFHYFYVFHTLVGEVSAIVSIVMIISILLYTRKIRGFALGLLAFPLMFLADIFALMTIWRQKKWSGRN
>Mature_470_residues
MKIFYINAFIVNTRTYMRLDFTLYLLISSLISIFTILYISFTLPLAFTYKPKSSQTNIKRSEITVLIPVYKEDVDVFKEV
INSVKKQDLNFVVVGDGCDEPYKSITISKGGLFVKLDKNMGKRRAIREGFKYVKTPYVLLLDSDTILPDNSIDILSSKLA
GDIVAVSPEISILPGRNKVTFHISEMMQRLREISYRALARFGSIVSLNGQCILAKTDVIKSLVESEEFNSVKLWRFSTIL
GDDRQITNYIYSKGYKATVTNDVVVKTKAPDTIRDLLKQMVRWYRSNNFFLIKEIGDGTIIKKGFFYMFTVLYWYALPLL
TLLSYSLYTEIILSHAIKHWNFIVRAITTDPARFIENVIISRIDRLFNIDPTPIANKFHHFLPHHFNPIMLIYDNKLSAK
MILFHYFYVFHTLVGEVSAIVSIVMIISILLYTRKIRGFALGLLAFPLMFLADIFALMTIWRQKKWSGRN

Specific function: Involved in the synthesis of Nod factor, a sulfated N- acyl-beta-1,4-tetrasaccharide of N-acetylglucosamine which initiates a series of events in the host plant species leading eventually to nodulation [H]

COG id: COG1215

COG function: function code M; Glycosyltransferases, probably involved in cell wall biogenesis

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nodC/HAS family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001173 [H]

Pfam domain/function: PF00535 Glycos_transf_2 [H]

EC number: NA

Molecular weight: Translated: 54330; Mature: 54330

Theoretical pI: Translated: 10.09; Mature: 10.09

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIFYINAFIVNTRTYMRLDFTLYLLISSLISIFTILYISFTLPLAFTYKPKSSQTNIKR
CEEEEEEEEEEECCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHCEEEEECCCCCCCCCCC
SEITVLIPVYKEDVDVFKEVINSVKKQDLNFVVVGDGCDEPYKSITISKGGLFVKLDKNM
CEEEEEEEECHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCEEEEECCCEEEEECCCC
GKRRAIREGFKYVKTPYVLLLDSDTILPDNSIDILSSKLAGDIVAVSPEISILPGRNKVT
CHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHCCCEEEECCCEEEECCCCEEE
FHISEMMQRLREISYRALARFGSIVSLNGQCILAKTDVIKSLVESEEFNSVKLWRFSTIL
EEHHHHHHHHHHHHHHHHHHCCCEEEECCCEEEEHHHHHHHHHCCCCCCCEEEEEEEECC
GDDRQITNYIYSKGYKATVTNDVVVKTKAPDTIRDLLKQMVRWYRSNNFFLIKEIGDGTI
CCCHHHHHHHHHCCCEEEECCCEEEEECCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCE
IKKGFFYMFTVLYWYALPLLTLLSYSLYTEIILSHAIKHWNFIVRAITTDPARFIENVII
EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCHHHHHHHHHH
SRIDRLFNIDPTPIANKFHHFLPHHFNPIMLIYDNKLSAKMILFHYFYVFHTLVGEVSAI
HHHHHHHCCCCCCHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHH
VSIVMIISILLYTRKIRGFALGLLAFPLMFLADIFALMTIWRQKKWSGRN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MKIFYINAFIVNTRTYMRLDFTLYLLISSLISIFTILYISFTLPLAFTYKPKSSQTNIKR
CEEEEEEEEEEECCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHCEEEEECCCCCCCCCCC
SEITVLIPVYKEDVDVFKEVINSVKKQDLNFVVVGDGCDEPYKSITISKGGLFVKLDKNM
CEEEEEEEECHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCEEEEECCCEEEEECCCC
GKRRAIREGFKYVKTPYVLLLDSDTILPDNSIDILSSKLAGDIVAVSPEISILPGRNKVT
CHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHCCCEEEECCCEEEECCCCEEE
FHISEMMQRLREISYRALARFGSIVSLNGQCILAKTDVIKSLVESEEFNSVKLWRFSTIL
EEHHHHHHHHHHHHHHHHHHCCCEEEECCCEEEEHHHHHHHHHCCCCCCCEEEEEEEECC
GDDRQITNYIYSKGYKATVTNDVVVKTKAPDTIRDLLKQMVRWYRSNNFFLIKEIGDGTI
CCCHHHHHHHHHCCCEEEECCCEEEEECCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCE
IKKGFFYMFTVLYWYALPLLTLLSYSLYTEIILSHAIKHWNFIVRAITTDPARFIENVII
EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCHHHHHHHHHH
SRIDRLFNIDPTPIANKFHHFLPHHFNPIMLIYDNKLSAKMILFHYFYVFHTLVGEVSAI
HHHHHHHCCCCCCHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHH
VSIVMIISILLYTRKIRGFALGLLAFPLMFLADIFALMTIWRQKKWSGRN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 2615763; 8146173 [H]