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The map label for this gene is soxM [H]

Identifier: 15899683

GI number: 15899683

Start: 2716493

End: 2718865

Strand: Direct

Name: soxM [H]

Synonym: SSO2973

Alternate gene names: 15899683

Gene position: 2716493-2718865 (Clockwise)

Preceding gene: 15899682

Following gene: 15899684

Centisome position: 90.78

GC content: 38.9

Gene sequence:

>2373_bases
ATGATGAACATAAAAAGAGTTTTAAAAGTAGCGTTATTCACAACAAGTGCAAGCGATATTGGACAAATGTATATAACGCT
AGGTATAATTGCACTATTGGCTGGGGCAGTAAATGCAGCGCTAATAAGATATCAGCTAACTTACCAAAGTTTAAGTGCGG
TAGACTATTATAATGCAGTATCATTGCATGGCATCTTCATGATATTCTTCATGGTAATGCCCATTTCGGTAGGTTTCGCA
AACTATCTAATACCTAGGATGATAGGAGCTCATGATTTATATTGGCCTAGAATTAATTCCTTTTCCTTTTGGATTTTAGT
TCCATCTGTCTTCCTAGGACTTATAGCTCCTTGGTTTGGACCCGTTAATACTGGTTGGTACATGTACGCACCACTATCTG
TAGAGACTTCAGTAAATTATGGACTTGGTACCACATTGGTTGAAATAGCTCTTATACTGTCTGGTATTTCATCTACATTA
ACTGGAGTAAACTTCCTAATGACTATAATAAAATTAAAGAAAATACCATACTTTAAAATGTCCCTATTTACATGGTCTTT
CTTCGCCACATCAATCTTACTAGTGGTCGCAATGCCACCATTAACTGCGGGACTAGTTTTCGCTTATTTAGAAAGATTAT
GGAATTTGCCATTCTTTGATGCGTCGTTAGGTGGATCTCCAGTACTATGGCAAAACCTGTTCTGGTTCTTTGGACATCCA
GAAGTCTACATATTAATTTTACCCGCAATGGGTCTAGTTGGTGAAATTCTACCCCGAATGGTGGGTAGGCAGATTTACGG
TTACAAGGCATTAGCATTATCGTCAATGGCCATAGCATTTCTAAGTGTACTAGGAGTATGGATGCATCACATGTTCACAG
CTATTGACAATACGGTAGCCCAAATAGTATCATCGGCTACCACGATGGCAATTGCAGTGCCCTCTGGAGTGAAGGTATTT
AACTGGACTGCGACCTTATATGGAGGTGAGATAAGATATAAGGCACCCACGATTTTAGTAATATCCTTTATAGCCATATT
CTTGGTTGGAGGAATTACTGGAGTATTCTTTCCGTTAGTACCGCTAGATTACGCATTCAATGGTACCTATTTAGTGGTAG
GACATTTCCATTACATGGTGTTTGCAATACTCTTTGCGTTATTAGCTGGTTTGATTTATTACTTCCCGTACTTTACTGGT
AAGTGGTATCACGATGATATAGTGAAAAGCGGAACTATAATGATAGTGGCTGGTGCATTTCTAATAGCTACTGGCATGAT
TATTGATGGAGTCCTAGGAATGCCCAGAAGATATGCTTCAGTTCCTTCACCAATTTACATACCATTCCAAGATATGATTG
ATGTCGGAGGAGTGTTAATGGGAATAGGCCTACTAATGGCTTTTGGTGATTTGTTGTACTCATGGATAAAGGGAAAGGCT
GTAGAAACTGTAGATCCCTGGAACGCTATACAGATAGGTCAACCAGATTTCTATATAAAACCGGTTAAACTACCGTTAAG
TTTTGGTAAATCATTGGATGGTAGTTTTGATGAAGAATATCATGGAGTGAGCTTTCCATATTACAGCATACTTGGAATAA
TGCTTTCATTTGTGCCCCTAGGTTTCATGTTTGGGTTCATTAACTTAATGCCAGTAGGTATATTATTCCTACTAGCGTTT
ATGGGTGTTGGCGTGTATTGGGCATATGATCAGTGGTTTAAACAAATACCTCCACCAATGCAACTTGATGGAGGTTCACC
AGTTTCCGCTGGTAGTGTAAATAATGGATTAGCATTAACACCGTCACTAGGAACTATTATAATGAGAGATGCGAGGTCGG
CGGTTTTATGGTTCATATTAGCTGAGATATGTCTTTTCGGATCCTTTATAGGAGGGTATATGTTTGTAGCTAGCCCTATT
ACTAATCCCATAGCATATGCTAATGTACCACCATTAAAAGTTGAATATTTCCCACTACCGGTAATAATGACAATTATATT
ACTTTCAAGCTCGATACCAGCACATTTAGCATATGAGGAGTTCAAGAAAGGGAATATGAAAATGTTCAAGGCATTAGGTA
TACTAACTGCGGTTATGGGATTCACATTCCTAATGGGACAAGTTTACGAGTTTACGCATGTCATACAATTTACTCCACAA
CAATCAGCATTTACTGCGTTCTTCTTTAGTACGGTAAGTCTACACGGATTTCACGTGATTATGGGACTGGTAGTGTGGGC
GTTCGTACTATTAAGGGCTTATAAGGGAGTGACACCTTATGGAGGTTCAGTTGCTGCAACGTATTATTGGCACTTCGTAG
ACGCCATATGGGTTGTAGTTTTCAGTACGTTCTATCTCCATCTCTTCGTATAA

Upstream 100 bases:

>100_bases
AACCATATATTTTTTATTTAATCATTTAAGTAACCCTAAATTCATTAGGTTTACTGGCTTTTAATAGAAAGATTTAAAAA
ATAAAATTTTAACACTTAAT

Downstream 100 bases:

>100_bases
GGTGAAAAAGTGAATAATTATTTTTTTATAACTATTCTAATGTTCTGTATCTTTCTTATTGCGATATCCGTTAATCCATT
TACGGAAGAGTACATGTTCG

Product: quinol oxidase-2, subunit I/III, cytochrome aa3 (soxM)

Products: NA

Alternate protein names: Quinol oxidase polypeptide I/III [H]

Number of amino acids: Translated: 790; Mature: 790

Protein sequence:

>790_residues
MMNIKRVLKVALFTTSASDIGQMYITLGIIALLAGAVNAALIRYQLTYQSLSAVDYYNAVSLHGIFMIFFMVMPISVGFA
NYLIPRMIGAHDLYWPRINSFSFWILVPSVFLGLIAPWFGPVNTGWYMYAPLSVETSVNYGLGTTLVEIALILSGISSTL
TGVNFLMTIIKLKKIPYFKMSLFTWSFFATSILLVVAMPPLTAGLVFAYLERLWNLPFFDASLGGSPVLWQNLFWFFGHP
EVYILILPAMGLVGEILPRMVGRQIYGYKALALSSMAIAFLSVLGVWMHHMFTAIDNTVAQIVSSATTMAIAVPSGVKVF
NWTATLYGGEIRYKAPTILVISFIAIFLVGGITGVFFPLVPLDYAFNGTYLVVGHFHYMVFAILFALLAGLIYYFPYFTG
KWYHDDIVKSGTIMIVAGAFLIATGMIIDGVLGMPRRYASVPSPIYIPFQDMIDVGGVLMGIGLLMAFGDLLYSWIKGKA
VETVDPWNAIQIGQPDFYIKPVKLPLSFGKSLDGSFDEEYHGVSFPYYSILGIMLSFVPLGFMFGFINLMPVGILFLLAF
MGVGVYWAYDQWFKQIPPPMQLDGGSPVSAGSVNNGLALTPSLGTIIMRDARSAVLWFILAEICLFGSFIGGYMFVASPI
TNPIAYANVPPLKVEYFPLPVIMTIILLSSSIPAHLAYEEFKKGNMKMFKALGILTAVMGFTFLMGQVYEFTHVIQFTPQ
QSAFTAFFFSTVSLHGFHVIMGLVVWAFVLLRAYKGVTPYGGSVAATYYWHFVDAIWVVVFSTFYLHLFV

Sequences:

>Translated_790_residues
MMNIKRVLKVALFTTSASDIGQMYITLGIIALLAGAVNAALIRYQLTYQSLSAVDYYNAVSLHGIFMIFFMVMPISVGFA
NYLIPRMIGAHDLYWPRINSFSFWILVPSVFLGLIAPWFGPVNTGWYMYAPLSVETSVNYGLGTTLVEIALILSGISSTL
TGVNFLMTIIKLKKIPYFKMSLFTWSFFATSILLVVAMPPLTAGLVFAYLERLWNLPFFDASLGGSPVLWQNLFWFFGHP
EVYILILPAMGLVGEILPRMVGRQIYGYKALALSSMAIAFLSVLGVWMHHMFTAIDNTVAQIVSSATTMAIAVPSGVKVF
NWTATLYGGEIRYKAPTILVISFIAIFLVGGITGVFFPLVPLDYAFNGTYLVVGHFHYMVFAILFALLAGLIYYFPYFTG
KWYHDDIVKSGTIMIVAGAFLIATGMIIDGVLGMPRRYASVPSPIYIPFQDMIDVGGVLMGIGLLMAFGDLLYSWIKGKA
VETVDPWNAIQIGQPDFYIKPVKLPLSFGKSLDGSFDEEYHGVSFPYYSILGIMLSFVPLGFMFGFINLMPVGILFLLAF
MGVGVYWAYDQWFKQIPPPMQLDGGSPVSAGSVNNGLALTPSLGTIIMRDARSAVLWFILAEICLFGSFIGGYMFVASPI
TNPIAYANVPPLKVEYFPLPVIMTIILLSSSIPAHLAYEEFKKGNMKMFKALGILTAVMGFTFLMGQVYEFTHVIQFTPQ
QSAFTAFFFSTVSLHGFHVIMGLVVWAFVLLRAYKGVTPYGGSVAATYYWHFVDAIWVVVFSTFYLHLFV
>Mature_790_residues
MMNIKRVLKVALFTTSASDIGQMYITLGIIALLAGAVNAALIRYQLTYQSLSAVDYYNAVSLHGIFMIFFMVMPISVGFA
NYLIPRMIGAHDLYWPRINSFSFWILVPSVFLGLIAPWFGPVNTGWYMYAPLSVETSVNYGLGTTLVEIALILSGISSTL
TGVNFLMTIIKLKKIPYFKMSLFTWSFFATSILLVVAMPPLTAGLVFAYLERLWNLPFFDASLGGSPVLWQNLFWFFGHP
EVYILILPAMGLVGEILPRMVGRQIYGYKALALSSMAIAFLSVLGVWMHHMFTAIDNTVAQIVSSATTMAIAVPSGVKVF
NWTATLYGGEIRYKAPTILVISFIAIFLVGGITGVFFPLVPLDYAFNGTYLVVGHFHYMVFAILFALLAGLIYYFPYFTG
KWYHDDIVKSGTIMIVAGAFLIATGMIIDGVLGMPRRYASVPSPIYIPFQDMIDVGGVLMGIGLLMAFGDLLYSWIKGKA
VETVDPWNAIQIGQPDFYIKPVKLPLSFGKSLDGSFDEEYHGVSFPYYSILGIMLSFVPLGFMFGFINLMPVGILFLLAF
MGVGVYWAYDQWFKQIPPPMQLDGGSPVSAGSVNNGLALTPSLGTIIMRDARSAVLWFILAEICLFGSFIGGYMFVASPI
TNPIAYANVPPLKVEYFPLPVIMTIILLSSSIPAHLAYEEFKKGNMKMFKALGILTAVMGFTFLMGQVYEFTHVIQFTPQ
QSAFTAFFFSTVSLHGFHVIMGLVVWAFVLLRAYKGVTPYGGSVAATYYWHFVDAIWVVVFSTFYLHLFV

Specific function: Catalytic subunit of the enzyme. Electrons originating in a quinol are transferred to the bimetallic center of SoxM formed by a heme and copper B [H]

COG id: COG0843

COG function: function code C; Heme/copper-type cytochrome/quinol oxidases, subunit 1

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: In the C-terminal section; belongs to the cytochrome c oxidase subunit 3 family [H]

Homologues:

Organism=Homo sapiens, GI251831109, Length=441, Percent_Identity=40.1360544217687, Blast_Score=259, Evalue=5e-69,
Organism=Escherichia coli, GI1786634, Length=495, Percent_Identity=33.3333333333333, Blast_Score=248, Evalue=9e-67,
Organism=Escherichia coli, GI1786633, Length=143, Percent_Identity=32.8671328671329, Blast_Score=69, Evalue=1e-12,
Organism=Saccharomyces cerevisiae, GI6226519, Length=497, Percent_Identity=35.6136820925553, Blast_Score=266, Evalue=1e-71,
Organism=Saccharomyces cerevisiae, GI6226524, Length=321, Percent_Identity=37.0716510903427, Blast_Score=188, Evalue=3e-48,
Organism=Saccharomyces cerevisiae, GI6226523, Length=332, Percent_Identity=33.433734939759, Blast_Score=125, Evalue=2e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000883
- InterPro:   IPR000298
- InterPro:   IPR013833 [H]

Pfam domain/function: PF00115 COX1; PF00510 COX3 [H]

EC number: 1.9.3.-

Molecular weight: Translated: 87558; Mature: 87558

Theoretical pI: Translated: 8.51; Mature: 8.51

Prosite motif: PS50855 COX1 ; PS00077 COX1_CUB ; PS50253 COX3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.1 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
0.1 %Cys     (Mature Protein)
4.7 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHCC
>Mature Secondary Structure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HHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8076636 [H]