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The map label for this gene is ydcM [C]

Identifier: 15899653

GI number: 15899653

Start: 2690118

End: 2691392

Strand: Direct

Name: ydcM [C]

Synonym: SSO2944

Alternate gene names: 15899653

Gene position: 2690118-2691392 (Clockwise)

Preceding gene: 15899652

Following gene: 15899654

Centisome position: 89.9

GC content: 43.53

Gene sequence:

>1275_bases
GTGCTGAAGAACTTAAGAATTAGAAAATTTGAACCGGAAGAGGAATACGTGTACTTCACGTACTCCATCAAGAACGACAA
GAGGGAGAAGAGCAAAGAGCTAATTAGGGAATACACAACACTACTACAGAAAGCAATCGACTACTTGTGGAATTTAACGA
AAATACAAGTAAGAAAAAAGAACGGTAATTACAAGATAACACTACCGAAGAAGAGGGAGGTGTATAAACCACTTAGGGAA
GAGTTGGAGAAGATCAACCACCTTGCATCACACTACGTCGATAAGGCAATTAATGACGCATTCTCGATCTTGAAGTCGTG
GAGGAAAAGGGCCATAAAGGGGAGAGCTTCGATTGAAAAACCAAGGGTGAAGAAGGCTTACGTTAGGATAAAGACGACTC
TGAGGAAGGTTGTTGGGGAAAGCGTTAGAATAACGGTAAGACCTCATGAGTACATCACCTTCTCGTGGAGTAAGTCATGG
TTCTCAAGAAGGGTTAGGGAGTTGGAACTTGGTGAACCTATAATTAAGGAGGAGAAAGTGTATTTGCCATTTCGTTACAA
GTTACCCTGGGCAACACCAGTGGATTTCTTGGCCATTGACTCCAACCTTTATACTCTAGATGCTTATGATGGTGAGAAAT
TCGTTACAATCTCACTAAAGCAGTTGTACTCCCTTAAGTACTCTATGGAGGTGAAGAGGGCTAAGGTGCAATCATTTGCA
TCAAAGCACACGAAGAGGGGGAGAGAGTTGATGAGGAAGTATTCGCATAGGGAGAGGAATCGCGTTCTAGATTTTGTTCA
CAAGTTTGTTAACACTTTGTTGGACTTGTACCCCATGACGTTTTTCGCTGTGGAAAAGCTTAACAAAGAGAGTATGTTTA
AGGATGCTAATGACTCTCTTTCGAGGAAGATTTCTAGGACTGTTTGGGGGAGTATACACAGAGTGTTGAAGTACAAGGCT
CCGCTTTACGGTTCTTTCGTTAAGGAAGTGAACCCACGCTTTACATCTAGGTCTTGCCCCAGATGTGGGTTTGTATCCCG
AAAGGTTGGTAAGACCTTTGAGTGTGAGAGGTGTGGGTTCAAGTTGGATAGGCAATTGAATGCTTCACTGAATATTTATC
TCAAGATGTGCGGATTCCCTCACATCCGTGAAATAGCGCGGGTGTGGGTTGGGGTTATTCCGCTAATGGGGCGGAGAGGG
ATGAACGGGTTTCCCCGTGACTTTGGTGAAGCCCAAGGGCTGAGGATTGATATTGAATATCATGAAATCCCATGA

Upstream 100 bases:

>100_bases
CCAGAAGAAGAATTGGTCGAAGACTTAGCCACAATACTAGTCTCATTCAGTGGAAAACTACACGGAATGAGGAGTCAAAA
ATACGAAAAGGTGAAGAAAT

Downstream 100 bases:

>100_bases
AGCCCAAACCCCTTCACCCTCATAACCTAACAGCTAGTGGGTGTTCTCATCCACCCCGCTCCATTCATCCAGTAGTAGAC
CGCGGGTTGGTCTTCAGCGG

Product: second ORF in transposon ISC1778

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 424; Mature: 424

Protein sequence:

>424_residues
MLKNLRIRKFEPEEEYVYFTYSIKNDKREKSKELIREYTTLLQKAIDYLWNLTKIQVRKKNGNYKITLPKKREVYKPLRE
ELEKINHLASHYVDKAINDAFSILKSWRKRAIKGRASIEKPRVKKAYVRIKTTLRKVVGESVRITVRPHEYITFSWSKSW
FSRRVRELELGEPIIKEEKVYLPFRYKLPWATPVDFLAIDSNLYTLDAYDGEKFVTISLKQLYSLKYSMEVKRAKVQSFA
SKHTKRGRELMRKYSHRERNRVLDFVHKFVNTLLDLYPMTFFAVEKLNKESMFKDANDSLSRKISRTVWGSIHRVLKYKA
PLYGSFVKEVNPRFTSRSCPRCGFVSRKVGKTFECERCGFKLDRQLNASLNIYLKMCGFPHIREIARVWVGVIPLMGRRG
MNGFPRDFGEAQGLRIDIEYHEIP

Sequences:

>Translated_424_residues
MLKNLRIRKFEPEEEYVYFTYSIKNDKREKSKELIREYTTLLQKAIDYLWNLTKIQVRKKNGNYKITLPKKREVYKPLRE
ELEKINHLASHYVDKAINDAFSILKSWRKRAIKGRASIEKPRVKKAYVRIKTTLRKVVGESVRITVRPHEYITFSWSKSW
FSRRVRELELGEPIIKEEKVYLPFRYKLPWATPVDFLAIDSNLYTLDAYDGEKFVTISLKQLYSLKYSMEVKRAKVQSFA
SKHTKRGRELMRKYSHRERNRVLDFVHKFVNTLLDLYPMTFFAVEKLNKESMFKDANDSLSRKISRTVWGSIHRVLKYKA
PLYGSFVKEVNPRFTSRSCPRCGFVSRKVGKTFECERCGFKLDRQLNASLNIYLKMCGFPHIREIARVWVGVIPLMGRRG
MNGFPRDFGEAQGLRIDIEYHEIP
>Mature_424_residues
MLKNLRIRKFEPEEEYVYFTYSIKNDKREKSKELIREYTTLLQKAIDYLWNLTKIQVRKKNGNYKITLPKKREVYKPLRE
ELEKINHLASHYVDKAINDAFSILKSWRKRAIKGRASIEKPRVKKAYVRIKTTLRKVVGESVRITVRPHEYITFSWSKSW
FSRRVRELELGEPIIKEEKVYLPFRYKLPWATPVDFLAIDSNLYTLDAYDGEKFVTISLKQLYSLKYSMEVKRAKVQSFA
SKHTKRGRELMRKYSHRERNRVLDFVHKFVNTLLDLYPMTFFAVEKLNKESMFKDANDSLSRKISRTVWGSIHRVLKYKA
PLYGSFVKEVNPRFTSRSCPRCGFVSRKVGKTFECERCGFKLDRQLNASLNIYLKMCGFPHIREIARVWVGVIPLMGRRG
MNGFPRDFGEAQGLRIDIEYHEIP

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: In the C-terminal section; belongs to the transposase 35 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001959
- InterPro:   IPR010095 [H]

Pfam domain/function: PF01385 Transposase_2; PF07282 Transposase_35 [H]

EC number: NA

Molecular weight: Translated: 50404; Mature: 50404

Theoretical pI: Translated: 10.61; Mature: 10.61

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKNLRIRKFEPEEEYVYFTYSIKNDKREKSKELIREYTTLLQKAIDYLWNLTKIQVRKK
CCCCCCCEECCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEC
NGNYKITLPKKREVYKPLREELEKINHLASHYVDKAINDAFSILKSWRKRAIKGRASIEK
CCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
PRVKKAYVRIKTTLRKVVGESVRITVRPHEYITFSWSKSWFSRRVRELELGEPIIKEEKV
CCHHHHHHHHHHHHHHHCCCCEEEEECCCEEEEEEECHHHHHHHHHHHHCCCCCCCCCEE
YLPFRYKLPWATPVDFLAIDSNLYTLDAYDGEKFVTISLKQLYSLKYSMEVKRAKVQSFA
EEEEEEECCCCCCCCEEEECCCEEEEECCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHH
SKHTKRGRELMRKYSHRERNRVLDFVHKFVNTLLDLYPMTFFAVEKLNKESMFKDANDSL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCCCCHHH
SRKISRTVWGSIHRVLKYKAPLYGSFVKEVNPRFTSRSCPRCGFVSRKVGKTFECERCGF
HHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCHHHHHCCCCCHHHCCC
KLDRQLNASLNIYLKMCGFPHIREIARVWVGVIPLMGRRGMNGFPRDFGEAQGLRIDIEY
HHCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEE
HEIP
CCCC
>Mature Secondary Structure
MLKNLRIRKFEPEEEYVYFTYSIKNDKREKSKELIREYTTLLQKAIDYLWNLTKIQVRKK
CCCCCCCEECCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEC
NGNYKITLPKKREVYKPLREELEKINHLASHYVDKAINDAFSILKSWRKRAIKGRASIEK
CCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
PRVKKAYVRIKTTLRKVVGESVRITVRPHEYITFSWSKSWFSRRVRELELGEPIIKEEKV
CCHHHHHHHHHHHHHHHCCCCEEEEECCCEEEEEEECHHHHHHHHHHHHCCCCCCCCCEE
YLPFRYKLPWATPVDFLAIDSNLYTLDAYDGEKFVTISLKQLYSLKYSMEVKRAKVQSFA
EEEEEEECCCCCCCCEEEECCCEEEEECCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHH
SKHTKRGRELMRKYSHRERNRVLDFVHKFVNTLLDLYPMTFFAVEKLNKESMFKDANDSL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCCCCHHH
SRKISRTVWGSIHRVLKYKAPLYGSFVKEVNPRFTSRSCPRCGFVSRKVGKTFECERCGF
HHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCHHHHHCCCCCHHHCCC
KLDRQLNASLNIYLKMCGFPHIREIARVWVGVIPLMGRRGMNGFPRDFGEAQGLRIDIEY
HHCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEE
HEIP
CCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]