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The map label for this gene is nrfC [H]

Identifier: 15899512

GI number: 15899512

Start: 2551936

End: 2552817

Strand: Reverse

Name: nrfC [H]

Synonym: SSO2794

Alternate gene names: 15899512

Gene position: 2552817-2551936 (Counterclockwise)

Preceding gene: 15899513

Following gene: 15899511

Centisome position: 85.31

GC content: 42.29

Gene sequence:

>882_bases
ATGGGTTCGCAACAGAACCCTCCTCTTAAGGTGATAAATATGTCTTCTCCCCAAAATACAACCACACCACAAATTAAATT
AGATATAAGACAAGGTGGTGTTCAACACGCTCCACCGTTTAGCTTAAAGGCAAACTACGCCATAATTACTGATTTAAACA
AGTGTTTCGGCTGTGGAGGCTGTCAGATGTCATGCAAGGAATGGAACACATCGGGGATGTTTGGACCATTACCAGACCTA
AATCCATACGGAGAATTAGACGTTATGTTCTGGCTAAGAGTACTCTATGTAGAAGTAGGAACATATCCCCAGACAAAGGT
CTACAATATACCAATAAACTGCTTCCACTGTATAAACGCACCTTGTACAGAAGTTTGCCCAGTAGGTGCTACATTCAAGA
GAACAGAGGATGGTATAGTATTAGTCGACTATAACGAATGCATAGGGACTAAGTACTGTATTTACGCATGCCCATACGGG
AATAGATTCTTCGATTACGTAGAAGGAGTTACAAAGAAGTGCACCCATTGTTTCGATAGGATTTATGATCCTACATTACC
CCCAGAGGAGAGGATACCGGCGTGTATCCACGGATGTATGGTTCAAGCTAGAATTTGGGCTAATATCTTAGACCCAACTG
ACCCTGGTACAATTTTATTCTATGATAAAGGAGGATTTGTAATGGGACCAGAAACTGGAGCACAGCCAGCAAGTGGTTAT
TTGCCATGGCGTAGCAAATACGCTGAAAGTGATGTCCAATTGTTAAGTGAAGCTGAGTACTACAACGTATGGACTGCTAA
TGGTGTAGTGCAACTCGGCGCCCAGGGGAACAACTCTACCTATACAGAAGGGAATGGATCAAATTCCAGCTCAAATTCAT
AA

Upstream 100 bases:

>100_bases
AGATTCGACGCTAATAACATTACGTCAACTAGCCTATGGAGTTATGTTGCACCTGGTTCGTTAGCCCCAACTTATACTAT
AGGGCAATATAAGATAAGGT

Downstream 100 bases:

>100_bases
TTTTTTTAAAAAAAAATGGTGATTTATATTGGCACTCTCTGTTTTGTTAAATATTAGACACGCATCCTACGACTTATTCG
CTGATCTTTTCCTCTATAAG

Product: oxydoreductase, putative

Products: oxidized cytochrome C552; NH3 [C]

Alternate protein names: NA

Number of amino acids: Translated: 293; Mature: 292

Protein sequence:

>293_residues
MGSQQNPPLKVINMSSPQNTTTPQIKLDIRQGGVQHAPPFSLKANYAIITDLNKCFGCGGCQMSCKEWNTSGMFGPLPDL
NPYGELDVMFWLRVLYVEVGTYPQTKVYNIPINCFHCINAPCTEVCPVGATFKRTEDGIVLVDYNECIGTKYCIYACPYG
NRFFDYVEGVTKKCTHCFDRIYDPTLPPEERIPACIHGCMVQARIWANILDPTDPGTILFYDKGGFVMGPETGAQPASGY
LPWRSKYAESDVQLLSEAEYYNVWTANGVVQLGAQGNNSTYTEGNGSNSSSNS

Sequences:

>Translated_293_residues
MGSQQNPPLKVINMSSPQNTTTPQIKLDIRQGGVQHAPPFSLKANYAIITDLNKCFGCGGCQMSCKEWNTSGMFGPLPDL
NPYGELDVMFWLRVLYVEVGTYPQTKVYNIPINCFHCINAPCTEVCPVGATFKRTEDGIVLVDYNECIGTKYCIYACPYG
NRFFDYVEGVTKKCTHCFDRIYDPTLPPEERIPACIHGCMVQARIWANILDPTDPGTILFYDKGGFVMGPETGAQPASGY
LPWRSKYAESDVQLLSEAEYYNVWTANGVVQLGAQGNNSTYTEGNGSNSSSNS
>Mature_292_residues
GSQQNPPLKVINMSSPQNTTTPQIKLDIRQGGVQHAPPFSLKANYAIITDLNKCFGCGGCQMSCKEWNTSGMFGPLPDLN
PYGELDVMFWLRVLYVEVGTYPQTKVYNIPINCFHCINAPCTEVCPVGATFKRTEDGIVLVDYNECIGTKYCIYACPYGN
RFFDYVEGVTKKCTHCFDRIYDPTLPPEERIPACIHGCMVQARIWANILDPTDPGTILFYDKGGFVMGPETGAQPASGYL
PWRSKYAESDVQLLSEAEYYNVWTANGVVQLGAQGNNSTYTEGNGSNSSSNS

Specific function: Probably involved in the transfer of electrons from the quinone pool to the type-c cytochromes [H]

COG id: COG0437

COG function: function code C; Fe-S-cluster-containing hydrogenase components 1

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 3 4Fe-4S ferredoxin-type domains [H]

Homologues:

Organism=Escherichia coli, GI2367345, Length=206, Percent_Identity=31.0679611650485, Blast_Score=98, Evalue=6e-22,
Organism=Escherichia coli, GI1787122, Length=221, Percent_Identity=30.316742081448, Blast_Score=92, Evalue=3e-20,
Organism=Escherichia coli, GI1787872, Length=216, Percent_Identity=28.7037037037037, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI226510944, Length=171, Percent_Identity=31.5789473684211, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1787740, Length=82, Percent_Identity=42.6829268292683, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1787478, Length=160, Percent_Identity=31.875, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI1787749, Length=161, Percent_Identity=29.8136645962733, Blast_Score=71, Evalue=6e-14,
Organism=Escherichia coli, GI1790326, Length=163, Percent_Identity=29.4478527607362, Blast_Score=71, Evalue=7e-14,
Organism=Escherichia coli, GI1789370, Length=195, Percent_Identity=26.1538461538462, Blast_Score=68, Evalue=7e-13,
Organism=Escherichia coli, GI87082180, Length=160, Percent_Identity=30.625, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI2367245, Length=163, Percent_Identity=28.8343558282209, Blast_Score=62, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR017567
- InterPro:   IPR006311 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 32382; Mature: 32251

Theoretical pI: Translated: 4.91; Mature: 4.91

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

5.1 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
7.5 %Cys+Met (Translated Protein)
5.1 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
7.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGSQQNPPLKVINMSSPQNTTTPQIKLDIRQGGVQHAPPFSLKANYAIITDLNKCFGCGG
CCCCCCCCEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCCEECCEEEEEECHHHHCCCC
CQMSCKEWNTSGMFGPLPDLNPYGELDVMFWLRVLYVEVGTYPQTKVYNIPINCFHCINA
CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEECCCEEEEECCC
PCTEVCPVGATFKRTEDGIVLVDYNECIGTKYCIYACPYGNRFFDYVEGVTKKCTHCFDR
CHHHHCCCCCCEEECCCCEEEEECHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHH
IYDPTLPPEERIPACIHGCMVQARIWANILDPTDPGTILFYDKGGFVMGPETGAQPASGY
HCCCCCCCHHCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCEEECCCCCCCCCCCC
LPWRSKYAESDVQLLSEAEYYNVWTANGVVQLGAQGNNSTYTEGNGSNSSSNS
CCCHHHHHHHHHHHHHCCCEEEEEECCCEEEECCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
GSQQNPPLKVINMSSPQNTTTPQIKLDIRQGGVQHAPPFSLKANYAIITDLNKCFGCGG
CCCCCCCEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCCEECCEEEEEECHHHHCCCC
CQMSCKEWNTSGMFGPLPDLNPYGELDVMFWLRVLYVEVGTYPQTKVYNIPINCFHCINA
CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEECCCEEEEECCC
PCTEVCPVGATFKRTEDGIVLVDYNECIGTKYCIYACPYGNRFFDYVEGVTKKCTHCFDR
CHHHHCCCCCCEEECCCCEEEEECHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHH
IYDPTLPPEERIPACIHGCMVQARIWANILDPTDPGTILFYDKGGFVMGPETGAQPASGY
HCCCCCCCHHCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCEEECCCCCCCCCCCC
LPWRSKYAESDVQLLSEAEYYNVWTANGVVQLGAQGNNSTYTEGNGSNSSSNS
CCCHHHHHHHHHHHHHCCCEEEEEECCCEEEECCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: reduced cytochrome C552; nitrite [C]

Specific reaction: reduced cytochrome C552 + nitrite = oxidized cytochrome C552 + NH3 [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]