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The map label for this gene is sqdB

Identifier: 15899313

GI number: 15899313

Start: 2351776

End: 2352945

Strand: Reverse

Name: sqdB

Synonym: SSO2583

Alternate gene names: NA

Gene position: 2352945-2351776 (Counterclockwise)

Preceding gene: 15899314

Following gene: 15899312

Centisome position: 78.63

GC content: 35.64

Gene sequence:

>1170_bases
TTGATGAAAGTAATTATTTTAGGTGCTGATGGTTACTTAGGATGGGCTCTAGCCTTACGATTAGCTAAAAGAGGACATGA
AGTCATTGGAGTAGATAACTTATATACCAGGGATGCGGTAAGGGAAGTAGGATCAGATTCCGCATTTCCATTACCAGATC
CTGAGGAAAGGATTTCAGCAGCAAGAAAATTACTTGACGTTGATATAACTTTTTATAGGGCTGATGTTAAGGATTTCGAT
AAATTACATGAAATTATTCAGAGGCATAAACCGGAAGCAATAGTACATTTTGCCGAACAAAGATCTGCTCCTTACTCGAT
GATTGATGTGAACCACGCTAATTATACACTAATAAACAATCTGACCAGTACAATAAATCTAATCTATTCGATCATTAAAG
TAGATCCTAGTATTCATATCTTAAAGATGGGGACAATGGGAGAGTACGGAACTCCAAATTACGATATACTGGAGTCACCA
TTCGTAGAAGTCGAGATAAATGGTAAAAAGGATAAGATTCCATTTCCTAAATGGGCGAGCAGTTGGTATCATTGGAGTAA
AGTTTATGACAGCTATAACTTAATGTGGGCAAATAAAGTATGGAACTTAACTATCACTGATATTATGCAAGGTCCTGTAT
ATGGTACTAGAACTGAGGAAATTATAGATGAGAAGTTAAGGACAAGGTTTGATTTTGATGAAGTTTGGGGAACAGTTGTT
AATAGGTATTGTGTGGAAGCAGTATTAGGTCTTCCGTTAACACCTTATGGAAAAGGAGGACAAACCAGAGGATTTATCTC
ACTTGAAGATAGTATGCAAGCATTAACAATTTTACTTGAACATCCTCCTAGCCAAGGAGAATATAGAGTCGTTAATCAGA
TTCATGAAGTCTATAGTGTTGGTCAAATTGCAAACATGGTTAAAGAAGTTGGCGAGTCCATGGGGTTAACGGTAAAGATA
CAAAATGTAAATAATCCTAGAGTAGAGAAAGAAGAGCACTATTATAACGTTGAAACTAAAATATTGCCATCCTTGGGATT
CAGTCCTAAAAAGAACTTGAAGAATGAGATAAGAAACATAATAGAGGATTTGATTCCTTATAAGAATAGACTAGAATCAT
TTAAACACGTAATACTACCTAAGACAGATTGGAGAAGAGGAAGAACTTAA

Upstream 100 bases:

>100_bases
TAAGCAATAATTTCCGATTTAACGGATGCGGATTTAACTTTTCTCGTTAGTTAGCCTTACCCTTACCATAAGCTTTTTTA
TTTCCACAACCTTCACATTA

Downstream 100 bases:

>100_bases
ATCACTATCGATCCTAAAACGTTTATAATTATGGTAATATTCAAGCTAAATTCATACTAGATATGTCTTGGTTTTTTGGA
AAAATCTATTTAAACTCCGA

Product: sulfolipid biosynthesis protein (sqdB)

Products: NA

Alternate protein names: NAD-Dependent Epimerase/Dehydratase; Sulfolipid Biosynthesis Protein; NAD Dependent Epimerase/Dehydratase Family; Sulfolipid Biosynthesis Protein SqdB; Epimerase; UDP Sulfoquinovose Synthase; NAD Dependent Epimerase/Dehydratase Family Protein; Nucleoside-Diphosphate-Sugar Epimerase

Number of amino acids: Translated: 389; Mature: 389

Protein sequence:

>389_residues
MMKVIILGADGYLGWALALRLAKRGHEVIGVDNLYTRDAVREVGSDSAFPLPDPEERISAARKLLDVDITFYRADVKDFD
KLHEIIQRHKPEAIVHFAEQRSAPYSMIDVNHANYTLINNLTSTINLIYSIIKVDPSIHILKMGTMGEYGTPNYDILESP
FVEVEINGKKDKIPFPKWASSWYHWSKVYDSYNLMWANKVWNLTITDIMQGPVYGTRTEEIIDEKLRTRFDFDEVWGTVV
NRYCVEAVLGLPLTPYGKGGQTRGFISLEDSMQALTILLEHPPSQGEYRVVNQIHEVYSVGQIANMVKEVGESMGLTVKI
QNVNNPRVEKEEHYYNVETKILPSLGFSPKKNLKNEIRNIIEDLIPYKNRLESFKHVILPKTDWRRGRT

Sequences:

>Translated_389_residues
MMKVIILGADGYLGWALALRLAKRGHEVIGVDNLYTRDAVREVGSDSAFPLPDPEERISAARKLLDVDITFYRADVKDFD
KLHEIIQRHKPEAIVHFAEQRSAPYSMIDVNHANYTLINNLTSTINLIYSIIKVDPSIHILKMGTMGEYGTPNYDILESP
FVEVEINGKKDKIPFPKWASSWYHWSKVYDSYNLMWANKVWNLTITDIMQGPVYGTRTEEIIDEKLRTRFDFDEVWGTVV
NRYCVEAVLGLPLTPYGKGGQTRGFISLEDSMQALTILLEHPPSQGEYRVVNQIHEVYSVGQIANMVKEVGESMGLTVKI
QNVNNPRVEKEEHYYNVETKILPSLGFSPKKNLKNEIRNIIEDLIPYKNRLESFKHVILPKTDWRRGRT
>Mature_389_residues
MMKVIILGADGYLGWALALRLAKRGHEVIGVDNLYTRDAVREVGSDSAFPLPDPEERISAARKLLDVDITFYRADVKDFD
KLHEIIQRHKPEAIVHFAEQRSAPYSMIDVNHANYTLINNLTSTINLIYSIIKVDPSIHILKMGTMGEYGTPNYDILESP
FVEVEINGKKDKIPFPKWASSWYHWSKVYDSYNLMWANKVWNLTITDIMQGPVYGTRTEEIIDEKLRTRFDFDEVWGTVV
NRYCVEAVLGLPLTPYGKGGQTRGFISLEDSMQALTILLEHPPSQGEYRVVNQIHEVYSVGQIANMVKEVGESMGLTVKI
QNVNNPRVEKEEHYYNVETKILPSLGFSPKKNLKNEIRNIIEDLIPYKNRLESFKHVILPKTDWRRGRT

Specific function: Unknown

COG id: COG0451

COG function: function code MG; Nucleoside-diphosphate-sugar epimerases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 44687; Mature: 44687

Theoretical pI: Translated: 6.75; Mature: 6.75

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMKVIILGADGYLGWALALRLAKRGHEVIGVDNLYTRDAVREVGSDSAFPLPDPEERISA
CEEEEEECCCCHHHHHHHHHHHHCCCCEEECCCHHHHHHHHHHCCCCCCCCCCHHHHHHH
ARKLLDVDITFYRADVKDFDKLHEIIQRHKPEAIVHFAEQRSAPYSMIDVNHANYTLINN
HHHHHHHEEEEEECCHHHHHHHHHHHHHCCCHHHHHHHHHCCCCEEEEEECCCCEEHHHH
LTSTINLIYSIIKVDPSIHILKMGTMGEYGTPNYDILESPFVEVEINGKKDKIPFPKWAS
HHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCHHHH
SWYHWSKVYDSYNLMWANKVWNLTITDIMQGPVYGTRTEEIIDEKLRTRFDFDEVWGTVV
HHHHHHHHHCCCCEEEECCEEEEEHHHHHCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHH
NRYCVEAVLGLPLTPYGKGGQTRGFISLEDSMQALTILLEHPPSQGEYRVVNQIHEVYSV
HHHHHHHHHCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH
GQIANMVKEVGESMGLTVKIQNVNNPRVEKEEHYYNVETKILPSLGFSPKKNLKNEIRNI
HHHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHEEECHHEEECCCCCCCHHHHHHHHHHH
IEDLIPYKNRLESFKHVILPKTDWRRGRT
HHHHCCHHHHHHHHHHEECCCCCCCCCCC
>Mature Secondary Structure
MMKVIILGADGYLGWALALRLAKRGHEVIGVDNLYTRDAVREVGSDSAFPLPDPEERISA
CEEEEEECCCCHHHHHHHHHHHHCCCCEEECCCHHHHHHHHHHCCCCCCCCCCHHHHHHH
ARKLLDVDITFYRADVKDFDKLHEIIQRHKPEAIVHFAEQRSAPYSMIDVNHANYTLINN
HHHHHHHEEEEEECCHHHHHHHHHHHHHCCCHHHHHHHHHCCCCEEEEEECCCCEEHHHH
LTSTINLIYSIIKVDPSIHILKMGTMGEYGTPNYDILESPFVEVEINGKKDKIPFPKWAS
HHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCHHHH
SWYHWSKVYDSYNLMWANKVWNLTITDIMQGPVYGTRTEEIIDEKLRTRFDFDEVWGTVV
HHHHHHHHHCCCCEEEECCEEEEEHHHHHCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHH
NRYCVEAVLGLPLTPYGKGGQTRGFISLEDSMQALTILLEHPPSQGEYRVVNQIHEVYSV
HHHHHHHHHCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH
GQIANMVKEVGESMGLTVKIQNVNNPRVEKEEHYYNVETKILPSLGFSPKKNLKNEIRNI
HHHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHEEECHHEEECCCCCCCHHHHHHHHHHH
IEDLIPYKNRLESFKHVILPKTDWRRGRT
HHHHCCHHHHHHHHHHEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA