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The map label for this gene is rpl13E [H]

Identifier: 15899190

GI number: 15899190

Start: 2218254

End: 2218586

Strand: Reverse

Name: rpl13E [H]

Synonym: SSO2442

Alternate gene names: 15899190

Gene position: 2218586-2218254 (Counterclockwise)

Preceding gene: 15899191

Following gene: 15899185

Centisome position: 74.14

GC content: 34.23

Gene sequence:

>333_bases
ATGTTAAAATTGAGATTAGCGGTAAGAGACCATTTAGATTTAAAGCTAAAATCTTTTAAAGGAACTACGTTACTTGATTA
TGGGGGGACTCCTATGGAGTTCCCTAAAGCTGTAATAAAAAGACCTAATTATCATTTCGAATACCCGCACAAGAGAAAAT
ACAAGAGAATAGGAAGGGGATTTAGTGTAGGAGAACTAGAAAAAGCTGGATTAAATATAAATAAGGCAAGGAAGCTAGGA
ATATTCGTGGATATAAGAAGGAAGTCAGTTCATGAAGAAAATGTGGAAACGCTTAAGAAGTTTTCAGAACAGCTTTCAAA
CCAAAAACCTTAA

Upstream 100 bases:

>100_bases
ATGCTCATGATATTCACATCGCTCTTTGGTGGGGAGTACATCGGTGCTGAACTAACGTCCCACGCATATACGAATATGGA
AATAATAAGAAAGTTTTTAG

Downstream 100 bases:

>100_bases
GGAGGTACTATTACTGCACGACCTATCACTCTACCATCTCTTAAATCCCTAATCGCCTTGTTAATATCCCTTAATTTATA
CGTATTTACTATAGGTCTAA

Product: 50S ribosomal protein L13e

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 110; Mature: 110

Protein sequence:

>110_residues
MLKLRLAVRDHLDLKLKSFKGTTLLDYGGTPMEFPKAVIKRPNYHFEYPHKRKYKRIGRGFSVGELEKAGLNINKARKLG
IFVDIRRKSVHEENVETLKKFSEQLSNQKP

Sequences:

>Translated_110_residues
MLKLRLAVRDHLDLKLKSFKGTTLLDYGGTPMEFPKAVIKRPNYHFEYPHKRKYKRIGRGFSVGELEKAGLNINKARKLG
IFVDIRRKSVHEENVETLKKFSEQLSNQKP
>Mature_110_residues
MLKLRLAVRDHLDLKLKSFKGTTLLDYGGTPMEFPKAVIKRPNYHFEYPHKRKYKRIGRGFSVGELEKAGLNINKARKLG
IFVDIRRKSVHEENVETLKKFSEQLSNQKP

Specific function: Unknown

COG id: COG4352

COG function: function code J; Ribosomal protein L13E

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L13e family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001380
- InterPro:   IPR023004
- InterPro:   IPR018256 [H]

Pfam domain/function: PF01294 Ribosomal_L13e [H]

EC number: NA

Molecular weight: Translated: 12839; Mature: 12839

Theoretical pI: Translated: 10.85; Mature: 10.85

Prosite motif: PS01104 RIBOSOMAL_L13E

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKLRLAVRDHLDLKLKSFKGTTLLDYGGTPMEFPKAVIKRPNYHFEYPHKRKYKRIGRG
CEEEEEECCCCCCEEEECCCCCEEEECCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHCCC
FSVGELEKAGLNINKARKLGIFVDIRRKSVHEENVETLKKFSEQLSNQKP
CCCCCHHHCCCCCCCCEEEEEEEEECHHHCCHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MLKLRLAVRDHLDLKLKSFKGTTLLDYGGTPMEFPKAVIKRPNYHFEYPHKRKYKRIGRG
CEEEEEECCCCCCEEEECCCCCEEEECCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHCCC
FSVGELEKAGLNINKARKLGIFVDIRRKSVHEENVETLKKFSEQLSNQKP
CCCCCHHHCCCCCCCCEEEEEEEEECHHHCCHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11427726 [H]