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The map label for this gene is ydcM [C]

Identifier: 15898908

GI number: 15898908

Start: 1948939

End: 1949301

Strand: Direct

Name: ydcM [C]

Synonym: SSO2124

Alternate gene names: 15898908

Gene position: 1948939-1949301 (Clockwise)

Preceding gene: 15898907

Following gene: 15898909

Centisome position: 65.13

GC content: 48.76

Gene sequence:

>363_bases
GTGGGTAAGTCCTTGAGGTCTCTGAGGAGGAGGCTGAGTGACGTGGGATTTGGTGAGCTGAGGGATGTGCTGAAGTATCA
GCTGGAAAAATACGGAAAGAAACTCATCCTAGTTAATCCTGCATACACTTCCAAAACTTGTGCTAGGTGCGGGTATGTGA
AAAATGACTTGTCTCTATCTGATCGTGTTTTCGTTTGTCCCAACTGTGGTTGGATTGCAGATCGTGACTATAATGCTTCT
CTTAACATTTTGAAGAGTGCGGGGTCGGAGCGATCCTTAGTGCCTGTGGAGCTCCGCCCTCTACCAGTACTCTGGCATGG
CAGAGCTGTGAAGCAGGAAGCTCCCTCATTTATGAGGGGGTAG

Upstream 100 bases:

>100_bases
TGAAGAATCTAAGAACGGATCTTTACATGAAGTTGGGTAAGTGGTTTGCTGAGCATTATGACGTTGTGGTGATGGAGGGT
ATTCACGCTAAACAACTTGT

Downstream 100 bases:

>100_bases
CTCACTTCCGCACTTAATCATCCTTATAGAGGGTTACTCCTCATATACCTATGAGAATAACTTTTGTTAGCTAATATGTA
TCATCATCATCTTCGGCTCT

Product: second ORF in transposon ISC1316

Products: NA

Alternate protein names: Transposase ISC; Transposase OrfB; Second ORF In Transposon ISC; Partial Transposase In ISC

Number of amino acids: Translated: 120; Mature: 119

Protein sequence:

>120_residues
MGKSLRSLRRRLSDVGFGELRDVLKYQLEKYGKKLILVNPAYTSKTCARCGYVKNDLSLSDRVFVCPNCGWIADRDYNAS
LNILKSAGSERSLVPVELRPLPVLWHGRAVKQEAPSFMRG

Sequences:

>Translated_120_residues
MGKSLRSLRRRLSDVGFGELRDVLKYQLEKYGKKLILVNPAYTSKTCARCGYVKNDLSLSDRVFVCPNCGWIADRDYNAS
LNILKSAGSERSLVPVELRPLPVLWHGRAVKQEAPSFMRG
>Mature_119_residues
GKSLRSLRRRLSDVGFGELRDVLKYQLEKYGKKLILVNPAYTSKTCARCGYVKNDLSLSDRVFVCPNCGWIADRDYNASL
NILKSAGSERSLVPVELRPLPVLWHGRAVKQEAPSFMRG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI288549314, Length=122, Percent_Identity=33.6065573770492, Blast_Score=62, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 13546; Mature: 13415

Theoretical pI: Translated: 10.27; Mature: 10.27

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.3 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
3.4 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGKSLRSLRRRLSDVGFGELRDVLKYQLEKYGKKLILVNPAYTSKTCARCGYVKNDLSLS
CCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEECCCCCCHHHHHCCCCCCCCCCC
DRVFVCPNCGWIADRDYNASLNILKSAGSERSLVPVELRPLPVLWHGRAVKQEAPSFMRG
CCEEECCCCCEECCCCCCCHHHHHHCCCCCCCEEEEECCCCEEEECCCHHHHHCCCCCCC
>Mature Secondary Structure 
GKSLRSLRRRLSDVGFGELRDVLKYQLEKYGKKLILVNPAYTSKTCARCGYVKNDLSLS
CHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEECCCCCCHHHHHCCCCCCCCCCC
DRVFVCPNCGWIADRDYNASLNILKSAGSERSLVPVELRPLPVLWHGRAVKQEAPSFMRG
CCEEECCCCCEECCCCCCCHHHHHHCCCCCCCEEEEECCCCEEEECCCHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA