Click here to switch to the map view.

The map label for this gene is 15898530

Identifier: 15898530

GI number: 15898530

Start: 1563917

End: 1564804

Strand: Direct

Name: 15898530

Synonym: SSO1726

Alternate gene names: NA

Gene position: 1563917-1564804 (Clockwise)

Preceding gene: 15898528

Following gene: 15898531

Centisome position: 52.27

GC content: 37.61

Gene sequence:

>888_bases
ATGAATGGGCTTTTTGTATTGGCTTATGCAATTACTAATTTACACCCAGGGGCTGGGAGGGGTTATGGAATAGTTGATAT
GCCAGTACAGAGAGATCAAATGGGTTATCCAATAATTTACTCTTCAGCTTTTAAAGGACCATTAAAGGCTTTATGTGCGG
GTGATGCCATTAATGACCATGGAAGGATAGACTGTAAGAAAAAGGGAGAGTGTTGTTGCTTGTTCGGAAGTGAACCCGAG
GAGGAGGAAAGTAGTAAGGGAATGTTAAACGTTATGGATTTACCGCTTTTCTCCGTTCCTGCACCCACTTTTGATGGTTT
TGTTCAAGTAACTACGAACTATTTGATTGATAGGGCTAGAAATATCTTTGAAGCCATTTCACACATAAACGGATATCTGG
GAAGTTTGGGTAATGAGATTAAAGCACTTTTAGATGCTCAAGGGAATAAGAGTGTAGAAGTTTATGATACAGAGGCTAAG
GTTGTTAATTTTGATCCTTCTAGCTTTAAGCTTCTCTCCTCCTTGCCTCTGTTCAACAACAGATTGGCTATTTCTGATGA
TAAGAGAGTTATAGATAAGTCGTTAATAATTTACACTAGGAATAGGTTGAATTTGTTGACTAAGGTTGTGGAGGAAGGAG
GGTTGTGGAGTGAGGAGTATATTCCGATGGGTTCGATTTTTATAGGAGGTATGATAATAGATAATGTAAGGAATAAGTTC
TGTGATGAACTGTCTAAGATTTCTTGTGATAGTCGTCTCTTTCTGCATCATTTTTCCAGGATATTTAATGCTGATAAAAT
TTCGGAGGACGTTTATCTATTTTATCTTAATATAGGTGGTAAGGAGAGTATTGGAAAGGGGTTAATGAAGGTCTTTATAG
GTGTCTAA

Upstream 100 bases:

>100_bases
TTGTTTCTGTAAGGGTGATGAAGATCGATCATTAGGTAATGTTGTTTTAACTTAACCATGCCTATAAAAGTTTATTTAAT
TACTCTTCTATTTCTTAATA

Downstream 100 bases:

>100_bases
ATTGGACGAAGCGGTCAATTTAGCTATAGAATTTGGAGAGAAAATATTTAGGCTCACTGAAATATGCAGTAGTAAAGAGT
TTATAAGTGGTTTTAGGGCT

Product: hypothetical protein

Products: NA

Alternate protein names: CRISPR-Associated RAMP Cmr4 Family Protein Family Protein; RAMP Superfamily DNA Repair Protein

Number of amino acids: Translated: 295; Mature: 295

Protein sequence:

>295_residues
MNGLFVLAYAITNLHPGAGRGYGIVDMPVQRDQMGYPIIYSSAFKGPLKALCAGDAINDHGRIDCKKKGECCCLFGSEPE
EEESSKGMLNVMDLPLFSVPAPTFDGFVQVTTNYLIDRARNIFEAISHINGYLGSLGNEIKALLDAQGNKSVEVYDTEAK
VVNFDPSSFKLLSSLPLFNNRLAISDDKRVIDKSLIIYTRNRLNLLTKVVEEGGLWSEEYIPMGSIFIGGMIIDNVRNKF
CDELSKISCDSRLFLHHFSRIFNADKISEDVYLFYLNIGGKESIGKGLMKVFIGV

Sequences:

>Translated_295_residues
MNGLFVLAYAITNLHPGAGRGYGIVDMPVQRDQMGYPIIYSSAFKGPLKALCAGDAINDHGRIDCKKKGECCCLFGSEPE
EEESSKGMLNVMDLPLFSVPAPTFDGFVQVTTNYLIDRARNIFEAISHINGYLGSLGNEIKALLDAQGNKSVEVYDTEAK
VVNFDPSSFKLLSSLPLFNNRLAISDDKRVIDKSLIIYTRNRLNLLTKVVEEGGLWSEEYIPMGSIFIGGMIIDNVRNKF
CDELSKISCDSRLFLHHFSRIFNADKISEDVYLFYLNIGGKESIGKGLMKVFIGV
>Mature_295_residues
MNGLFVLAYAITNLHPGAGRGYGIVDMPVQRDQMGYPIIYSSAFKGPLKALCAGDAINDHGRIDCKKKGECCCLFGSEPE
EEESSKGMLNVMDLPLFSVPAPTFDGFVQVTTNYLIDRARNIFEAISHINGYLGSLGNEIKALLDAQGNKSVEVYDTEAK
VVNFDPSSFKLLSSLPLFNNRLAISDDKRVIDKSLIIYTRNRLNLLTKVVEEGGLWSEEYIPMGSIFIGGMIIDNVRNKF
CDELSKISCDSRLFLHHFSRIFNADKISEDVYLFYLNIGGKESIGKGLMKVFIGV

Specific function: Unknown

COG id: COG1336

COG function: function code L; Uncharacterized protein predicted to be involved in DNA repair (RAMP superfamily)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 32723; Mature: 32723

Theoretical pI: Translated: 5.71; Mature: 5.71

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNGLFVLAYAITNLHPGAGRGYGIVDMPVQRDQMGYPIIYSSAFKGPLKALCAGDAINDH
CCCEEEEEEEHHCCCCCCCCCCCEEECCCCCCCCCCCEEECCCCCCHHHHHHCCCCCCCC
GRIDCKKKGECCCLFGSEPEEEESSKGMLNVMDLPLFSVPAPTFDGFVQVTTNYLIDRAR
CCEEECCCCCEEEEECCCCCCHHHCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHH
NIFEAISHINGYLGSLGNEIKALLDAQGNKSVEVYDTEAKVVNFDPSSFKLLSSLPLFNN
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCEEEEEECCHHHHHHHHCCCCCC
RLAISDDKRVIDKSLIIYTRNRLNLLTKVVEEGGLWSEEYIPMGSIFIGGMIIDNVRNKF
EEEECCCHHHHCCEEEEEECHHHHHHHHHHHHCCCCCHHCCCCCHHHCCHHHHHHHHHHH
CDELSKISCDSRLFLHHFSRIFNADKISEDVYLFYLNIGGKESIGKGLMKVFIGV
HHHHHHCCCCCHHHHHHHHHHHCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHCC
>Mature Secondary Structure
MNGLFVLAYAITNLHPGAGRGYGIVDMPVQRDQMGYPIIYSSAFKGPLKALCAGDAINDH
CCCEEEEEEEHHCCCCCCCCCCCEEECCCCCCCCCCCEEECCCCCCHHHHHHCCCCCCCC
GRIDCKKKGECCCLFGSEPEEEESSKGMLNVMDLPLFSVPAPTFDGFVQVTTNYLIDRAR
CCEEECCCCCEEEEECCCCCCHHHCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHH
NIFEAISHINGYLGSLGNEIKALLDAQGNKSVEVYDTEAKVVNFDPSSFKLLSSLPLFNN
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCEEEEEECCHHHHHHHHCCCCCC
RLAISDDKRVIDKSLIIYTRNRLNLLTKVVEEGGLWSEEYIPMGSIFIGGMIIDNVRNKF
EEEECCCHHHHCCEEEEEECHHHHHHHHHHHHCCCCCHHCCCCCHHHCCHHHHHHHHHHH
CDELSKISCDSRLFLHHFSRIFNADKISEDVYLFYLNIGGKESIGKGLMKVFIGV
HHHHHHCCCCCHHHHHHHHHHHCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA