Click here to switch to the map view.

The map label for this gene is ytrA [H]

Identifier: 15898404

GI number: 15898404

Start: 1435680

End: 1436033

Strand: Direct

Name: ytrA [H]

Synonym: SSO1589

Alternate gene names: 15898404

Gene position: 1435680-1436033 (Clockwise)

Preceding gene: 15898403

Following gene: 15898405

Centisome position: 47.98

GC content: 38.42

Gene sequence:

>354_bases
ATGACAAATATAACAATTCGAATAGACCTCAACTCCAAAAAGCAGATCTACGAACAGATAGCTAATCAAATAATTGAACT
AATAGCTAAGGGAGTATTAAATCCTGGAGATCCTTTACCCTCAGTTAGGGAAATGGCTGCAATGTTAAGTGTGAATATGT
TAACCGTGGAGAAGGCATACAAATATCTGGAAGGTGAAGGATTTGTAACCGTTTACAAGAAGAGATTCGTAGTCAAGACT
GATATAAGGGATGAGAAGTGGAAGGAATTGATGAAAGAAGCCGTTTATAGGGCTTTGGCTGGTGGCGCTAAAAGGGATGA
GATTCTCTTCTTTATATCAGCTTTGTTGAGGTGA

Upstream 100 bases:

>100_bases
GATAGGGCTATCCCTAAATTTATAACATAATGACGACACTATGAACACACTCAAATAGTTTCAAGTTAAACTTTTAAACT
CATTCTGATATAGTTGTTAT

Downstream 100 bases:

>100_bases
AAAACATGACACTTTTAGATATAATCATTTACGTGGAGTTCACATTTCTCTTTATCAATTTATTCCTATTACCTAACTTA
CAACCTCCAGATATCCTCCT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 117; Mature: 116

Protein sequence:

>117_residues
MTNITIRIDLNSKKQIYEQIANQIIELIAKGVLNPGDPLPSVREMAAMLSVNMLTVEKAYKYLEGEGFVTVYKKRFVVKT
DIRDEKWKELMKEAVYRALAGGAKRDEILFFISALLR

Sequences:

>Translated_117_residues
MTNITIRIDLNSKKQIYEQIANQIIELIAKGVLNPGDPLPSVREMAAMLSVNMLTVEKAYKYLEGEGFVTVYKKRFVVKT
DIRDEKWKELMKEAVYRALAGGAKRDEILFFISALLR
>Mature_116_residues
TNITIRIDLNSKKQIYEQIANQIIELIAKGVLNPGDPLPSVREMAAMLSVNMLTVEKAYKYLEGEGFVTVYKKRFVVKTD
IRDEKWKELMKEAVYRALAGGAKRDEILFFISALLR

Specific function: Negatively regulates ABC transporter complex ytrBCDEF that plays a role in acetoin utilization during stationary phase and sporulation [H]

COG id: COG1725

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 13411; Mature: 13280

Theoretical pI: Translated: 9.85; Mature: 9.85

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTNITIRIDLNSKKQIYEQIANQIIELIAKGVLNPGDPLPSVREMAAMLSVNMLTVEKAY
CCEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
KYLEGEGFVTVYKKRFVVKTDIRDEKWKELMKEAVYRALAGGAKRDEILFFISALLR
HHHCCCCEEEEEEHHEEEECCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHC
>Mature Secondary Structure 
TNITIRIDLNSKKQIYEQIANQIIELIAKGVLNPGDPLPSVREMAAMLSVNMLTVEKAY
CEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
KYLEGEGFVTVYKKRFVVKTDIRDEKWKELMKEAVYRALAGGAKRDEILFFISALLR
HHHCCCCEEEEEEHHEEEECCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9387221; 9384377 [H]