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The map label for this gene is ydeM [H]

Identifier: 15898384

GI number: 15898384

Start: 1412210

End: 1413394

Strand: Direct

Name: ydeM [H]

Synonym: SSO1566

Alternate gene names: 15898384

Gene position: 1412210-1413394 (Clockwise)

Preceding gene: 15898381

Following gene: 15898385

Centisome position: 47.2

GC content: 38.4

Gene sequence:

>1185_bases
ATGGCTCTCTCTAAATTCAACCTTTTTATTGGCGATATTCTTTTTAATACCCTTACTGGGTACGCGATTAAGCTGGAATC
ATGGGAAATTGAGAAGTTAAGGAAAGGAGTTGTGCCAGAACATTTAAAGGATATAATAGAGGAAGGTTTCTCCGCTACGG
ATGAGGACTTAGATGAGGAAATTGAGAAGTTTTTAAGGAAGCCCGTTCTAGAACCTACTCTCGTATTAACTTATAATTGT
AATTTTGATTGTATCTACTGTTTCCAAAAGGGGTTTAGAAAAAACATTTCGGTATCGGATAAGGTTACAAGGGGATTCGT
AAACTACATTAGGAAGAACGAGAAAGGTAGGAAGGTAAGGGTAACTTACTTCGGTGGAGAACCAATCTTACAGCTTAGGA
AAATAGAGGAGATATCTAGGGAATTATCTGACTTAAAGTACTCGTTTAGTGTAGTAACTAATGGTTCTCTTTTGACTAGA
AAGATAGTAGAGAGACTGATTCCACTAGGACTAACTCACGTCCAGATAACGTTAGATGGACCAAAAGAAGTTCACGATAA
GAGGAGGTTCTTTGTTAGCGGTGAGGGTACGTTTGATGTGATTGTGAAGAATCTAAAGGAGATACAAGATATGGTAAAGG
TTGTATTGAGGATAAACATTGATGTGAAGAACTTGAACGAAATAGGGGAGTTATTAAACGAATTGAAGATGGAGGGAATA
AATAGAGTGAGATTAGATCCTCATTTGGTTCATTCAAATGTGTTCAGAAATGAGTGGTGGGATTTCACAATATCTAGTAA
GGCTGAAGGAGATGTTATGGTTAAGTTCTGGGAGATTGCTAGGAAGTATGGATTTGAGGTTCCACAAGACGTGCTTAGAT
TAGGGTTATGTGTAGCTTATTCAAGTGAAGACATTGTTGTTGACCCAGAGGGAAACATTTATCCTTGCTGGGCTTTCACT
GGAAACCCCCTTTACGTTAAGGGTAAGCTGGAAGAGGATGGGAGTGTTAAAGTAACTAATAAGTCGTTGTGGTGGAAGGT
TAAAATTGAGGATAAGTGTAGGGAATGTCCATTTTTGCCGTTATGTATGGGTGGTTGTAAGTTCTTAGCAACTATTAATG
GAGATGATTGTAAGAGAGAGGCGTATGAAAAGATAGTTAGGTCAATACGTTGGGTGATGGGCTAA

Upstream 100 bases:

>100_bases
AATGGAGGCAATCCTACAGACCAAAAAGATAGTTGTAATAGAGAGGAAATATGGTAGATGTGGATATTCTCCAAGCTGGG
GAGACTGAGGTTATCTCCCC

Downstream 100 bases:

>100_bases
TGGTTAAGGTAGGTAAGGTTAGGATAATGGAGTTATTGGAGCCTGAATTTTTCGGTACTGTACTTAATCACAATATATCT
GTTATCGAAAATGGTCCTTG

Product: Heme biosynthesis related protein

Products: NA

Alternate protein names: AnSME homolog [H]

Number of amino acids: Translated: 394; Mature: 393

Protein sequence:

>394_residues
MALSKFNLFIGDILFNTLTGYAIKLESWEIEKLRKGVVPEHLKDIIEEGFSATDEDLDEEIEKFLRKPVLEPTLVLTYNC
NFDCIYCFQKGFRKNISVSDKVTRGFVNYIRKNEKGRKVRVTYFGGEPILQLRKIEEISRELSDLKYSFSVVTNGSLLTR
KIVERLIPLGLTHVQITLDGPKEVHDKRRFFVSGEGTFDVIVKNLKEIQDMVKVVLRINIDVKNLNEIGELLNELKMEGI
NRVRLDPHLVHSNVFRNEWWDFTISSKAEGDVMVKFWEIARKYGFEVPQDVLRLGLCVAYSSEDIVVDPEGNIYPCWAFT
GNPLYVKGKLEEDGSVKVTNKSLWWKVKIEDKCRECPFLPLCMGGCKFLATINGDDCKREAYEKIVRSIRWVMG

Sequences:

>Translated_394_residues
MALSKFNLFIGDILFNTLTGYAIKLESWEIEKLRKGVVPEHLKDIIEEGFSATDEDLDEEIEKFLRKPVLEPTLVLTYNC
NFDCIYCFQKGFRKNISVSDKVTRGFVNYIRKNEKGRKVRVTYFGGEPILQLRKIEEISRELSDLKYSFSVVTNGSLLTR
KIVERLIPLGLTHVQITLDGPKEVHDKRRFFVSGEGTFDVIVKNLKEIQDMVKVVLRINIDVKNLNEIGELLNELKMEGI
NRVRLDPHLVHSNVFRNEWWDFTISSKAEGDVMVKFWEIARKYGFEVPQDVLRLGLCVAYSSEDIVVDPEGNIYPCWAFT
GNPLYVKGKLEEDGSVKVTNKSLWWKVKIEDKCRECPFLPLCMGGCKFLATINGDDCKREAYEKIVRSIRWVMG
>Mature_393_residues
ALSKFNLFIGDILFNTLTGYAIKLESWEIEKLRKGVVPEHLKDIIEEGFSATDEDLDEEIEKFLRKPVLEPTLVLTYNCN
FDCIYCFQKGFRKNISVSDKVTRGFVNYIRKNEKGRKVRVTYFGGEPILQLRKIEEISRELSDLKYSFSVVTNGSLLTRK
IVERLIPLGLTHVQITLDGPKEVHDKRRFFVSGEGTFDVIVKNLKEIQDMVKVVLRINIDVKNLNEIGELLNELKMEGIN
RVRLDPHLVHSNVFRNEWWDFTISSKAEGDVMVKFWEIARKYGFEVPQDVLRLGLCVAYSSEDIVVDPEGNIYPCWAFTG
NPLYVKGKLEEDGSVKVTNKSLWWKVKIEDKCRECPFLPLCMGGCKFLATINGDDCKREAYEKIVRSIRWVMG

Specific function: Unknown

COG id: COG0641

COG function: function code R; Arylsulfatase regulator (Fe-S oxidoreductase)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the radical SAM superfamily. Anaerobic sulfatase-maturating enzyme family [H]

Homologues:

Organism=Escherichia coli, GI87081923, Length=330, Percent_Identity=27.2727272727273, Blast_Score=81, Evalue=1e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007197 [H]

Pfam domain/function: PF04055 Radical_SAM [H]

EC number: NA

Molecular weight: Translated: 45513; Mature: 45382

Theoretical pI: Translated: 7.32; Mature: 7.32

Prosite motif: PS01305 MOAA_NIFB_PQQE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MALSKFNLFIGDILFNTLTGYAIKLESWEIEKLRKGVVPEHLKDIIEEGFSATDEDLDEE
CCCCHHHHHHHHHHHHHHCCEEEEECCCCHHHHHCCCCHHHHHHHHHHCCCCCCHHHHHH
IEKFLRKPVLEPTLVLTYNCNFDCIYCFQKGFRKNISVSDKVTRGFVNYIRKNEKGRKVR
HHHHHHCCCCCCEEEEEEECCCCEEHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCEEE
VTYFGGEPILQLRKIEEISRELSDLKYSFSVVTNGSLLTRKIVERLIPLGLTHVQITLDG
EEEECCCCHHHHHHHHHHHHHHHHCEEEEEEEECCHHHHHHHHHHHHCCCCEEEEEEECC
PKEVHDKRRFFVSGEGTFDVIVKNLKEIQDMVKVVLRINIDVKNLNEIGELLNELKMEGI
HHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCC
NRVRLDPHLVHSNVFRNEWWDFTISSKAEGDVMVKFWEIARKYGFEVPQDVLRLGLCVAY
CEEECCHHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHEEE
SSEDIVVDPEGNIYPCWAFTGNPLYVKGKLEEDGSVKVTNKSLWWKVKIEDKCRECPFLP
CCCCEEECCCCCEEEEEEECCCEEEEEEEECCCCCEEEECCCEEEEEEECCHHCCCCCCC
LCMGGCKFLATINGDDCKREAYEKIVRSIRWVMG
EECCCCEEEEEECCCHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
ALSKFNLFIGDILFNTLTGYAIKLESWEIEKLRKGVVPEHLKDIIEEGFSATDEDLDEE
CCCHHHHHHHHHHHHHHCCEEEEECCCCHHHHHCCCCHHHHHHHHHHCCCCCCHHHHHH
IEKFLRKPVLEPTLVLTYNCNFDCIYCFQKGFRKNISVSDKVTRGFVNYIRKNEKGRKVR
HHHHHHCCCCCCEEEEEEECCCCEEHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCEEE
VTYFGGEPILQLRKIEEISRELSDLKYSFSVVTNGSLLTRKIVERLIPLGLTHVQITLDG
EEEECCCCHHHHHHHHHHHHHHHHCEEEEEEEECCHHHHHHHHHHHHCCCCEEEEEEECC
PKEVHDKRRFFVSGEGTFDVIVKNLKEIQDMVKVVLRINIDVKNLNEIGELLNELKMEGI
HHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCC
NRVRLDPHLVHSNVFRNEWWDFTISSKAEGDVMVKFWEIARKYGFEVPQDVLRLGLCVAY
CEEECCHHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHEEE
SSEDIVVDPEGNIYPCWAFTGNPLYVKGKLEEDGSVKVTNKSLWWKVKIEDKCRECPFLP
CCCCEEECCCCCEEEEEEECCCEEEEEEEECCCCCEEEECCCEEEEEEECCHHCCCCCCC
LCMGGCKFLATINGDDCKREAYEKIVRSIRWVMG
EECCCCEEEEEECCCHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]