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The map label for this gene is 15898288

Identifier: 15898288

GI number: 15898288

Start: 1312127

End: 1312546

Strand: Reverse

Name: 15898288

Synonym: SSO1456

Alternate gene names: NA

Gene position: 1312546-1312127 (Counterclockwise)

Preceding gene: 15898290

Following gene: 15898287

Centisome position: 43.86

GC content: 36.43

Gene sequence:

>420_bases
TTGAGGTTAGAAATTGCCGAAAAATATATGGCTGAAGCTTACGAGTACTTAAAGAAAGGAGATACTATTCAAGCTTCAGG
AAAAGCTTACAAGGTCGCAGAGGAAATCGTGAAAGCCATTAAATTTCTTATATCCAAATTAATAGGACAAGATGTTGGAG
TTATATCGCCTTATAGAACTCAAGTGAGAAAGTTAGACCAAGAATTGGCAAACTATAAGCCATATGTTGAGGTAAACACA
GTTGACGCATTTCAAGGGAGGGAGAAAGACGTGATAATTTTTAGCGTGACCGCGACTAATGGCTTGAGATTTGTTACCAA
TAGAAGGAGGTTAAACGTTGCCTTTACTAGACCAAGGTATAAACTAATCGTTTTAGGAAATGAGAATAGCATAATGAGTT
GCCAAATGACAATTTGTTAA

Upstream 100 bases:

>100_bases
ATGGAAGAGTTAATAAAAAAAGGCTAGAGAGAAAGGCATTGACGTAGAGGATCTACTGATCAGAGAAATATCTAAGGATG
ACCCACAAGAAGGAATTAGA

Downstream 100 bases:

>100_bases
GGAGGTTTTTAGAATACGCTTACAGTTTAAATAGCGTGTGGACCTATGATGGAAGGGATTTTACACCTAAGGCAGTGCTT
GGCACTTTAACTAGAAATAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 139; Mature: 139

Protein sequence:

>139_residues
MRLEIAEKYMAEAYEYLKKGDTIQASGKAYKVAEEIVKAIKFLISKLIGQDVGVISPYRTQVRKLDQELANYKPYVEVNT
VDAFQGREKDVIIFSVTATNGLRFVTNRRRLNVAFTRPRYKLIVLGNENSIMSCQMTIC

Sequences:

>Translated_139_residues
MRLEIAEKYMAEAYEYLKKGDTIQASGKAYKVAEEIVKAIKFLISKLIGQDVGVISPYRTQVRKLDQELANYKPYVEVNT
VDAFQGREKDVIIFSVTATNGLRFVTNRRRLNVAFTRPRYKLIVLGNENSIMSCQMTIC
>Mature_139_residues
MRLEIAEKYMAEAYEYLKKGDTIQASGKAYKVAEEIVKAIKFLISKLIGQDVGVISPYRTQVRKLDQELANYKPYVEVNT
VDAFQGREKDVIIFSVTATNGLRFVTNRRRLNVAFTRPRYKLIVLGNENSIMSCQMTIC

Specific function: Unknown

COG id: COG1112

COG function: function code L; Superfamily I DNA and RNA helicases and helicase subunits

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the DNA2/NAM7 helicase family [H]

Homologues:

Organism=Homo sapiens, GI18375673, Length=132, Percent_Identity=37.8787878787879, Blast_Score=73, Evalue=9e-14,
Organism=Homo sapiens, GI122937299, Length=98, Percent_Identity=40.8163265306122, Blast_Score=72, Evalue=2e-13,
Organism=Homo sapiens, GI113722133, Length=113, Percent_Identity=36.283185840708, Blast_Score=70, Evalue=4e-13,
Organism=Homo sapiens, GI14251207, Length=98, Percent_Identity=40.8163265306122, Blast_Score=69, Evalue=2e-12,
Organism=Homo sapiens, GI255759908, Length=98, Percent_Identity=40.8163265306122, Blast_Score=68, Evalue=2e-12,
Organism=Homo sapiens, GI254826809, Length=120, Percent_Identity=37.5, Blast_Score=68, Evalue=2e-12,
Organism=Homo sapiens, GI119392094, Length=86, Percent_Identity=38.3720930232558, Blast_Score=67, Evalue=4e-12,
Organism=Homo sapiens, GI255759910, Length=98, Percent_Identity=40.8163265306122, Blast_Score=66, Evalue=9e-12,
Organism=Caenorhabditis elegans, GI17533985, Length=94, Percent_Identity=43.6170212765958, Blast_Score=73, Evalue=4e-14,
Organism=Caenorhabditis elegans, GI17510163, Length=122, Percent_Identity=40.1639344262295, Blast_Score=73, Evalue=4e-14,
Organism=Caenorhabditis elegans, GI17533987, Length=94, Percent_Identity=43.6170212765958, Blast_Score=73, Evalue=5e-14,
Organism=Saccharomyces cerevisiae, GI6322835, Length=134, Percent_Identity=39.5522388059701, Blast_Score=75, Evalue=4e-15,
Organism=Saccharomyces cerevisiae, GI6323462, Length=129, Percent_Identity=32.5581395348837, Blast_Score=69, Evalue=2e-13,
Organism=Saccharomyces cerevisiae, GI6323726, Length=92, Percent_Identity=41.304347826087, Blast_Score=66, Evalue=2e-12,
Organism=Saccharomyces cerevisiae, GI6321958, Length=98, Percent_Identity=38.7755102040816, Blast_Score=62, Evalue=4e-11,
Organism=Drosophila melanogaster, GI24660647, Length=118, Percent_Identity=38.9830508474576, Blast_Score=74, Evalue=4e-14,
Organism=Drosophila melanogaster, GI221330969, Length=118, Percent_Identity=38.9830508474576, Blast_Score=73, Evalue=7e-14,
Organism=Drosophila melanogaster, GI18859757, Length=106, Percent_Identity=35.8490566037736, Blast_Score=72, Evalue=1e-13,
Organism=Drosophila melanogaster, GI45550425, Length=90, Percent_Identity=40, Blast_Score=67, Evalue=3e-12,
Organism=Drosophila melanogaster, GI161077698, Length=86, Percent_Identity=40.6976744186046, Blast_Score=67, Evalue=5e-12,
Organism=Drosophila melanogaster, GI24640932, Length=86, Percent_Identity=40.6976744186046, Blast_Score=67, Evalue=5e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014001
- InterPro:   IPR004483 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 15907; Mature: 15907

Theoretical pI: Translated: 9.85; Mature: 9.85

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLEIAEKYMAEAYEYLKKGDTIQASGKAYKVAEEIVKAIKFLISKLIGQDVGVISPYRT
CCCHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHH
QVRKLDQELANYKPYVEVNTVDAFQGREKDVIIFSVTATNGLRFVTNRRRLNVAFTRPRY
HHHHHHHHHHCCCCEEEEEEECCCCCCCCCEEEEEEECCCCEEEEECCEEEEEEEECCCE
KLIVLGNENSIMSCQMTIC
EEEEEECCCCEEEEEEEEC
>Mature Secondary Structure
MRLEIAEKYMAEAYEYLKKGDTIQASGKAYKVAEEIVKAIKFLISKLIGQDVGVISPYRT
CCCHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHH
QVRKLDQELANYKPYVEVNTVDAFQGREKDVIIFSVTATNGLRFVTNRRRLNVAFTRPRY
HHHHHHHHHHCCCCEEEEEEECCCCCCCCCEEEEEEECCCCEEEEECCEEEEEEEECCCE
KLIVLGNENSIMSCQMTIC
EEEEEECCCCEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]