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The map label for this gene is ygcB [C]

Identifier: 15898278

GI number: 15898278

Start: 1292310

End: 1293857

Strand: Reverse

Name: ygcB [C]

Synonym: SSO1440

Alternate gene names: 15898278

Gene position: 1293857-1292310 (Counterclockwise)

Preceding gene: 15898279

Following gene: 15898277

Centisome position: 43.24

GC content: 36.69

Gene sequence:

>1548_bases
TTGAAGTTGAGGCTAAGGAAGCCTATGAGGTCGGCGGGGAATATGTCGTCTTTAGTTGACTTCTATAACGATTTCATAAC
TCGTCATGGCTTTGAGGAAAGGAAGGGTATTGAGGAGACTTTACGATATTTGGAGAACGGACATAATGTTATACTTAAGG
CTCCAACTGGTTACGGTAAAACAACGTTAACAATGATCTTAGCTAATGCCGTTAGTAGTAATATTGACATAGGGAGTAGA
GTTATACACGTATTGCCGTATAGGGCTATTGTGCAGGATTTATATTTAAAGCTGAAAAAATACGCTGATAAAGGGATAAT
TTACACTAAGAGCATAGGAGCTCAAGATATGGATTATCATGATTCGCCTTTTTTCATGAAGAAAGTTAACGTTACGACTC
TAGATACTTTTATTCTCAATTTATTTAAATTACCTACTATTGATTTTAAGTTAATTTTTAAAAATTACGGTTCTCATTAT
GAGTTCCCTAGGGCGTTGATATATAGTAGTATTGTAATATTTGATGAATTTCACTTATTAGGTGAGGACGGTAAGAGTTT
AGGAGCTGGTCTTAGTGCCATAGAGGTTTTAAGTGATGCGGGTGTTCCAATAGTAGTTACTTCAGCGACCATAGATAAGG
GGTTGGAGAGGGTTTTAATGGATAAATTAGGTAAGAGCGGAAAGGTCGTTTACGCGAGTGATTTTAAAATCGACAGAAAG
ATATACGTTAATGAATTGGAAAAGGATGAGATTTCCATTGCTGATGAAAAGGTAAAAGAGGGTAAAAGGGTTCTCCTAGT
TTACAATACGAGAATGGGGGCAATTGAAGCTTACTGGAAGTTAAAGGAAAGGGGATTATCTCCTATTCTGATTCACAGTA
AGTTCAGTAAAAAGGATAGGATAGATAAGGTGAATAAGATAAATGATGCAAAGTTGGTAGTTTCAACTCAAGTCATAGAG
GCTGGTATTGATACTTCTTTTGACGTTTTAATAACTGAAGCTTGTCCATCTCATAATCTGATTCAAAGGGCTGGTAGGGT
TGCGAGATATGGTAAGGGAGGAAAAGGGAAGTTGGAGGGTGAGGTTTACATTTTCCCATTTAGTGGAAAGGTTTATAATG
AGGGTGAGGTTAAGGAGACCATGAAAAGGGTAAGGAAATTGAAGACTATTGATGAGAGTTTGCTTATTGAAAGGGATTAC
ACTAAGGAAATTGACTCAATATTAGCTAGGGATCTATCTGTAATAGACAACTCTGTGTTCGTGGACTATAAAAAGGTGAA
GTCGCTGTATGAGAATATTTGTTCTATAACTAGGGAGACAAGTATTATATTGGGATTTCCGCCAAACAGTGATAACGTTG
ATGATGCCATACCCTTAACTGAGGAGGAGGCGATAAAAATAATAAAGAGCAAGGGAAGTTCTGCGTTTGTGGGCAATAGT
AATATTAAACTATATGCTGGGAAATGCCTTCAGCTGGAAATGATAAAGAATGATATTTTAGGGGTTAGGATTCAAGATTA
TAATAGTGAAATAGGTGGTGTGTATTGA

Upstream 100 bases:

>100_bases
GTTACTTTCTGGGAAGAGAATGGGTATATATGGGGGAAGGAAGGGTCACCGGTAAGGTACATTTTACCGATAACTACTTA
TCCCTTAGCTAGTAAGGAGG

Downstream 100 bases:

>100_bases
TCAAGCCTTGTGCTTATGAGAAGCAAGGTTTAATTGATCACGCGATTGGTTCTTATAAGGTCTTACATGATAAAATAAGT
GAGTCCTATTATAAGGTTAT

Product: ATP-dependent RNA helicase-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 515; Mature: 515

Protein sequence:

>515_residues
MKLRLRKPMRSAGNMSSLVDFYNDFITRHGFEERKGIEETLRYLENGHNVILKAPTGYGKTTLTMILANAVSSNIDIGSR
VIHVLPYRAIVQDLYLKLKKYADKGIIYTKSIGAQDMDYHDSPFFMKKVNVTTLDTFILNLFKLPTIDFKLIFKNYGSHY
EFPRALIYSSIVIFDEFHLLGEDGKSLGAGLSAIEVLSDAGVPIVVTSATIDKGLERVLMDKLGKSGKVVYASDFKIDRK
IYVNELEKDEISIADEKVKEGKRVLLVYNTRMGAIEAYWKLKERGLSPILIHSKFSKKDRIDKVNKINDAKLVVSTQVIE
AGIDTSFDVLITEACPSHNLIQRAGRVARYGKGGKGKLEGEVYIFPFSGKVYNEGEVKETMKRVRKLKTIDESLLIERDY
TKEIDSILARDLSVIDNSVFVDYKKVKSLYENICSITRETSIILGFPPNSDNVDDAIPLTEEEAIKIIKSKGSSAFVGNS
NIKLYAGKCLQLEMIKNDILGVRIQDYNSEIGGVY

Sequences:

>Translated_515_residues
MKLRLRKPMRSAGNMSSLVDFYNDFITRHGFEERKGIEETLRYLENGHNVILKAPTGYGKTTLTMILANAVSSNIDIGSR
VIHVLPYRAIVQDLYLKLKKYADKGIIYTKSIGAQDMDYHDSPFFMKKVNVTTLDTFILNLFKLPTIDFKLIFKNYGSHY
EFPRALIYSSIVIFDEFHLLGEDGKSLGAGLSAIEVLSDAGVPIVVTSATIDKGLERVLMDKLGKSGKVVYASDFKIDRK
IYVNELEKDEISIADEKVKEGKRVLLVYNTRMGAIEAYWKLKERGLSPILIHSKFSKKDRIDKVNKINDAKLVVSTQVIE
AGIDTSFDVLITEACPSHNLIQRAGRVARYGKGGKGKLEGEVYIFPFSGKVYNEGEVKETMKRVRKLKTIDESLLIERDY
TKEIDSILARDLSVIDNSVFVDYKKVKSLYENICSITRETSIILGFPPNSDNVDDAIPLTEEEAIKIIKSKGSSAFVGNS
NIKLYAGKCLQLEMIKNDILGVRIQDYNSEIGGVY
>Mature_515_residues
MKLRLRKPMRSAGNMSSLVDFYNDFITRHGFEERKGIEETLRYLENGHNVILKAPTGYGKTTLTMILANAVSSNIDIGSR
VIHVLPYRAIVQDLYLKLKKYADKGIIYTKSIGAQDMDYHDSPFFMKKVNVTTLDTFILNLFKLPTIDFKLIFKNYGSHY
EFPRALIYSSIVIFDEFHLLGEDGKSLGAGLSAIEVLSDAGVPIVVTSATIDKGLERVLMDKLGKSGKVVYASDFKIDRK
IYVNELEKDEISIADEKVKEGKRVLLVYNTRMGAIEAYWKLKERGLSPILIHSKFSKKDRIDKVNKINDAKLVVSTQVIE
AGIDTSFDVLITEACPSHNLIQRAGRVARYGKGGKGKLEGEVYIFPFSGKVYNEGEVKETMKRVRKLKTIDESLLIERDY
TKEIDSILARDLSVIDNSVFVDYKKVKSLYENICSITRETSIILGFPPNSDNVDDAIPLTEEEAIKIIKSKGSSAFVGNS
NIKLYAGKCLQLEMIKNDILGVRIQDYNSEIGGVY

Specific function: Unknown

COG id: COG1203

COG function: function code R; Predicted helicases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 helicase C-terminal domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014001
- InterPro:   IPR011545
- InterPro:   IPR001650
- InterPro:   IPR006474
- InterPro:   IPR014021 [H]

Pfam domain/function: PF00270 DEAD; PF00271 Helicase_C [H]

EC number: NA

Molecular weight: Translated: 57947; Mature: 57947

Theoretical pI: Translated: 9.17; Mature: 9.17

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLRLRKPMRSAGNMSSLVDFYNDFITRHGFEERKGIEETLRYLENGHNVILKAPTGYGK
CCCCCCCCHHHCCCHHHHHHHHHHHHHHCCCHHHCCHHHHHHHHHCCCEEEEECCCCCCH
TTLTMILANAVSSNIDIGSRVIHVLPYRAIVQDLYLKLKKYADKGIIYTKSIGAQDMDYH
HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCC
DSPFFMKKVNVTTLDTFILNLFKLPTIDFKLIFKNYGSHYEFPRALIYSSIVIFDEFHLL
CCCCEEEEECCHHHHHHHHHHHHCCCCCEEEEEHHCCCCCCCHHHHHHHHHHEEHHHHEE
GEDGKSLGAGLSAIEVLSDAGVPIVVTSATIDKGLERVLMDKLGKSGKVVYASDFKIDRK
CCCCCHHHCCHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHHCCCCCCEEEEECCEECCC
IYVNELEKDEISIADEKVKEGKRVLLVYNTRMGAIEAYWKLKERGLSPILIHSKFSKKDR
CEECCCCCCHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHCCCCEEEEECCCCCHHH
IDKVNKINDAKLVVSTQVIEAGIDTSFDVLITEACPSHNLIQRAGRVARYGKGGKGKLEG
HHHHHCCCCCEEEEEHHHHHHCCCCCEEEEEECCCCCCHHHHHCCHHHHCCCCCCCEECC
EVYIFPFSGKVYNEGEVKETMKRVRKLKTIDESLLIERDYTKEIDSILARDLSVIDNSVF
EEEEEECCCCEECCCHHHHHHHHHHHHHHHHHHHEECCHHHHHHHHHHHHHHHHHCCHHE
VDYKKVKSLYENICSITRETSIILGFPPNSDNVDDAIPLTEEEAIKIIKSKGSSAFVGNS
EEHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEECCC
NIKLYAGKCLQLEMIKNDILGVRIQDYNSEIGGVY
CEEEEECCEEEEEEHHCCCEEEEEECCCCCCCCCC
>Mature Secondary Structure
MKLRLRKPMRSAGNMSSLVDFYNDFITRHGFEERKGIEETLRYLENGHNVILKAPTGYGK
CCCCCCCCHHHCCCHHHHHHHHHHHHHHCCCHHHCCHHHHHHHHHCCCEEEEECCCCCCH
TTLTMILANAVSSNIDIGSRVIHVLPYRAIVQDLYLKLKKYADKGIIYTKSIGAQDMDYH
HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCC
DSPFFMKKVNVTTLDTFILNLFKLPTIDFKLIFKNYGSHYEFPRALIYSSIVIFDEFHLL
CCCCEEEEECCHHHHHHHHHHHHCCCCCEEEEEHHCCCCCCCHHHHHHHHHHEEHHHHEE
GEDGKSLGAGLSAIEVLSDAGVPIVVTSATIDKGLERVLMDKLGKSGKVVYASDFKIDRK
CCCCCHHHCCHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHHCCCCCCEEEEECCEECCC
IYVNELEKDEISIADEKVKEGKRVLLVYNTRMGAIEAYWKLKERGLSPILIHSKFSKKDR
CEECCCCCCHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHCCCCEEEEECCCCCHHH
IDKVNKINDAKLVVSTQVIEAGIDTSFDVLITEACPSHNLIQRAGRVARYGKGGKGKLEG
HHHHHCCCCCEEEEEHHHHHHCCCCCEEEEEECCCCCCHHHHHCCHHHHCCCCCCCEECC
EVYIFPFSGKVYNEGEVKETMKRVRKLKTIDESLLIERDYTKEIDSILARDLSVIDNSVF
EEEEEECCCCEECCCHHHHHHHHHHHHHHHHHHHEECCHHHHHHHHHHHHHHHHHCCHHE
VDYKKVKSLYENICSITRETSIILGFPPNSDNVDDAIPLTEEEAIKIIKSKGSSAFVGNS
EEHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEECCC
NIKLYAGKCLQLEMIKNDILGVRIQDYNSEIGGVY
CEEEEECCEEEEEEHHCCCEEEEEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]