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The map label for this gene is ygcB [C]

Identifier: 15898242

GI number: 15898242

Start: 1249713

End: 1251431

Strand: Direct

Name: ygcB [C]

Synonym: SSO1402

Alternate gene names: 15898242

Gene position: 1249713-1251431 (Clockwise)

Preceding gene: 15898241

Following gene: 15898243

Centisome position: 41.77

GC content: 38.51

Gene sequence:

>1719_bases
ATGGGATGTGAAGAAAATAAGAGAGGCATTAGAAAGGATGAGAGTCGAGATGGAGGAGGTATACTCATCCACATGAGGAA
AGGGATACAGAAAGTCTTGGACATTCTCAACTGTCGTGATAATTCAATTTATTATGAATGTGAAGACGTGAACTTCATTC
TAACGTTCCCAACTGGTTACGGAAAAACCACGCTTTCTTTGGAAATCGTCCGAATGATTGACCTAAAGCCCACCCAAAAC
TTCAGTAGGTTAATTCACGTTGTTCCTACTAGGTCGTTGGCAAAGGATATTCAGAATTCAGCTTGTGAAAGAGGATTAGG
ATTTGCAGTTCAATACTCCTTCACTCCCTCTCACATAAAATCCCCACTTTTCTTAGCAAAGTTCATCATAACGACTTACG
ATTCGTTCTTACTAAACTTGTATAAGGCGTCAATAGGAGAGCCTTTCTCATATCACGGTCATTACGATTTGCCCAGATTT
GGAATATACACTTCTCTAGTACACTTCGATGAATTCCACTTAATGAATGAGGGAAATTCATGGACCTCTCTGTTAGGGGC
AGTTAGGCACTTATCTAAAGTGGGAGTGAATATGATACTCTCATCAGCTACGCCCAGTAAGAGCGTGGAGGAGGAATTAA
TCAGAATGATGGAGAACCGGAAAGTAGTTAGATTGGCAGTTGTAAACGAGTACGGCGAATCTGTGAAAAATAGGAATTGT
GTGAAAGTGAGTGAAGGTTACTATGAGTGTGAAGTGGGAAGCGTGAAGTATACTAGCGTAGAGGTAGAGGATAAGATAAA
TGCCCCTGATATAAACATCAATTTTCTTGATAAAGAGGATGATGTATTAGGAGTAGTTAGGAGAAACAAGGATAAGAAAA
TTATGGTCATAGTGAACACTGTTGATAAGGCAATTACGCTCTACGAAAAGTTAAGGGATTTGTCTCCTTGCTTAATACAC
TCGAGGTTTAAGATAGGTGATAGGGATGAGAAGTTGAGAAAGGAGTGTAATATTATAATTGCAACTCAAGTCATTGAGGT
TGGCGTTAACATTTCCTCTGAGGTGATGATAACTGAACAAGCTCCAATAACCTCTATTGTACAGAGAGTTGGTAGGCTAT
TAAGAGATAACAAAAAGGATAAGGGGGAACTTTACATATGGAAGAGCGGGAATTATTATCCCTACGACAAAGATGAAGTT
GAAAACACTATTAAGGAGTTGGAAAGTAAGAAAAACGACATATCCTTAAAGGTACCTTCAAGTTACGGAGAAATTGTAGA
TAGAGTTATAAAGCCTCCAAGAGGAGACCCTGATTTATTAAGAGAGTTAGATAATATAGCGGAGAACTTATTCGCAACTA
GAGAGGACTTAGAAAAATTACTTGATAAGTACTGTACTTTAACTAACTCATATGTTATAAACGTAGCGTATGATACGCCA
GCTTCAGAGAGGGATCTGATTCCACTTGACGGAGATTTGGCACTTAAAATAGCTATTAAGGGTAACGATTGTGTCTACGC
TTACGTAGAGGAATACAAGCCGGAGAGAAAGGTAGCGGTTGATAAGGTAAATGTAAGGGAAACTTGTGTTGAAATAGCAA
AACCTTGTAGAGATTATAGGAAAGTCTTTTATGATGGAGATAAACGCTATATAATATACGCACTGAAGATAGATAAAGAA
CTTTACGATGAGGAAACTGGGTTGAGGTTGAGGAAATGA

Upstream 100 bases:

>100_bases
ACATCTTTGAGGGAATTAGGGGTACGTTATCACCGGTAGAAGTAGCATACATGATTGCTAGGGAGACGTATTTGAAGGAA
GAGCAATCACCTCTAACTTC

Downstream 100 bases:

>100_bases
CTTGTTGGGCATTTTACGGAATGGAAACTTTCAAACAACACAGTTTAGGTATACTCAATTTCTTTAGGGATAACTTCTCC
TATATCATTCCAATTATATC

Product: ATP-dependent RNA helicase related protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 572; Mature: 571

Protein sequence:

>572_residues
MGCEENKRGIRKDESRDGGGILIHMRKGIQKVLDILNCRDNSIYYECEDVNFILTFPTGYGKTTLSLEIVRMIDLKPTQN
FSRLIHVVPTRSLAKDIQNSACERGLGFAVQYSFTPSHIKSPLFLAKFIITTYDSFLLNLYKASIGEPFSYHGHYDLPRF
GIYTSLVHFDEFHLMNEGNSWTSLLGAVRHLSKVGVNMILSSATPSKSVEEELIRMMENRKVVRLAVVNEYGESVKNRNC
VKVSEGYYECEVGSVKYTSVEVEDKINAPDININFLDKEDDVLGVVRRNKDKKIMVIVNTVDKAITLYEKLRDLSPCLIH
SRFKIGDRDEKLRKECNIIIATQVIEVGVNISSEVMITEQAPITSIVQRVGRLLRDNKKDKGELYIWKSGNYYPYDKDEV
ENTIKELESKKNDISLKVPSSYGEIVDRVIKPPRGDPDLLRELDNIAENLFATREDLEKLLDKYCTLTNSYVINVAYDTP
ASERDLIPLDGDLALKIAIKGNDCVYAYVEEYKPERKVAVDKVNVRETCVEIAKPCRDYRKVFYDGDKRYIIYALKIDKE
LYDEETGLRLRK

Sequences:

>Translated_572_residues
MGCEENKRGIRKDESRDGGGILIHMRKGIQKVLDILNCRDNSIYYECEDVNFILTFPTGYGKTTLSLEIVRMIDLKPTQN
FSRLIHVVPTRSLAKDIQNSACERGLGFAVQYSFTPSHIKSPLFLAKFIITTYDSFLLNLYKASIGEPFSYHGHYDLPRF
GIYTSLVHFDEFHLMNEGNSWTSLLGAVRHLSKVGVNMILSSATPSKSVEEELIRMMENRKVVRLAVVNEYGESVKNRNC
VKVSEGYYECEVGSVKYTSVEVEDKINAPDININFLDKEDDVLGVVRRNKDKKIMVIVNTVDKAITLYEKLRDLSPCLIH
SRFKIGDRDEKLRKECNIIIATQVIEVGVNISSEVMITEQAPITSIVQRVGRLLRDNKKDKGELYIWKSGNYYPYDKDEV
ENTIKELESKKNDISLKVPSSYGEIVDRVIKPPRGDPDLLRELDNIAENLFATREDLEKLLDKYCTLTNSYVINVAYDTP
ASERDLIPLDGDLALKIAIKGNDCVYAYVEEYKPERKVAVDKVNVRETCVEIAKPCRDYRKVFYDGDKRYIIYALKIDKE
LYDEETGLRLRK
>Mature_571_residues
GCEENKRGIRKDESRDGGGILIHMRKGIQKVLDILNCRDNSIYYECEDVNFILTFPTGYGKTTLSLEIVRMIDLKPTQNF
SRLIHVVPTRSLAKDIQNSACERGLGFAVQYSFTPSHIKSPLFLAKFIITTYDSFLLNLYKASIGEPFSYHGHYDLPRFG
IYTSLVHFDEFHLMNEGNSWTSLLGAVRHLSKVGVNMILSSATPSKSVEEELIRMMENRKVVRLAVVNEYGESVKNRNCV
KVSEGYYECEVGSVKYTSVEVEDKINAPDININFLDKEDDVLGVVRRNKDKKIMVIVNTVDKAITLYEKLRDLSPCLIHS
RFKIGDRDEKLRKECNIIIATQVIEVGVNISSEVMITEQAPITSIVQRVGRLLRDNKKDKGELYIWKSGNYYPYDKDEVE
NTIKELESKKNDISLKVPSSYGEIVDRVIKPPRGDPDLLRELDNIAENLFATREDLEKLLDKYCTLTNSYVINVAYDTPA
SERDLIPLDGDLALKIAIKGNDCVYAYVEEYKPERKVAVDKVNVRETCVEIAKPCRDYRKVFYDGDKRYIIYALKIDKEL
YDEETGLRLRK

Specific function: Unknown

COG id: COG1203

COG function: function code R; Predicted helicases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 helicase C-terminal domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014001
- InterPro:   IPR011545
- InterPro:   IPR001650
- InterPro:   IPR006474
- InterPro:   IPR014021 [H]

Pfam domain/function: PF00270 DEAD; PF00271 Helicase_C [H]

EC number: NA

Molecular weight: Translated: 65545; Mature: 65414

Theoretical pI: Translated: 6.61; Mature: 6.61

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGCEENKRGIRKDESRDGGGILIHMRKGIQKVLDILNCRDNSIYYECEDVNFILTFPTGY
CCCCCCCCCCCCCCCCCCCEEEEEEHHHHHHHHHHHCCCCCCEEEEECCCEEEEEECCCC
GKTTLSLEIVRMIDLKPTQNFSRLIHVVPTRSLAKDIQNSACERGLGFAVQYSFTPSHIK
CCEEEEEEEEEEECCCCCCCHHHHEEECCCHHHHHHHHHHHHHCCCCEEEEEECCHHHHC
SPLFLAKFIITTYDSFLLNLYKASIGEPFSYHGHYDLPRFGIYTSLVHFDEFHLMNEGNS
CHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHEEEECCCCH
WTSLLGAVRHLSKVGVNMILSSATPSKSVEEELIRMMENRKVVRLAVVNEYGESVKNRNC
HHHHHHHHHHHHHHCHHHEEECCCCCCHHHHHHHHHHHCCCEEEEEEEHHHHHHHCCCCC
VKVSEGYYECEVGSVKYTSVEVEDKINAPDININFLDKEDDVLGVVRRNKDKKIMVIVNT
EEEECCEEEEEECCEEEEEEEECCCCCCCCCEEEEECCCCCEEEHEECCCCCEEEEEEEC
VDKAITLYEKLRDLSPCLIHSRFKIGDRDEKLRKECNIIIATQVIEVGVNISSEVMITEQ
HHHHHHHHHHHHCCCHHHHHCCCCCCCCHHHHHHHCCEEEEEEEEHHCCCCCCEEEEECC
APITSIVQRVGRLLRDNKKDKGELYIWKSGNYYPYDKDEVENTIKELESKKNDISLKVPS
CCHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHCCCCCEEEEECC
SYGEIVDRVIKPPRGDPDLLRELDNIAENLFATREDLEKLLDKYCTLTNSYVINVAYDTP
HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCC
ASERDLIPLDGDLALKIAIKGNDCVYAYVEEYKPERKVAVDKVNVRETCVEIAKPCRDYR
CCCCCEEECCCCEEEEEEEECCCEEEEEHHHCCCCCCEEEECCCHHHHHHHHHHHHHHHH
KVFYDGDKRYIIYALKIDKELYDEETGLRLRK
HHEECCCCEEEEEEEEECHHHHCCCCCCEECC
>Mature Secondary Structure 
GCEENKRGIRKDESRDGGGILIHMRKGIQKVLDILNCRDNSIYYECEDVNFILTFPTGY
CCCCCCCCCCCCCCCCCCEEEEEEHHHHHHHHHHHCCCCCCEEEEECCCEEEEEECCCC
GKTTLSLEIVRMIDLKPTQNFSRLIHVVPTRSLAKDIQNSACERGLGFAVQYSFTPSHIK
CCEEEEEEEEEEECCCCCCCHHHHEEECCCHHHHHHHHHHHHHCCCCEEEEEECCHHHHC
SPLFLAKFIITTYDSFLLNLYKASIGEPFSYHGHYDLPRFGIYTSLVHFDEFHLMNEGNS
CHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHEEEECCCCH
WTSLLGAVRHLSKVGVNMILSSATPSKSVEEELIRMMENRKVVRLAVVNEYGESVKNRNC
HHHHHHHHHHHHHHCHHHEEECCCCCCHHHHHHHHHHHCCCEEEEEEEHHHHHHHCCCCC
VKVSEGYYECEVGSVKYTSVEVEDKINAPDININFLDKEDDVLGVVRRNKDKKIMVIVNT
EEEECCEEEEEECCEEEEEEEECCCCCCCCCEEEEECCCCCEEEHEECCCCCEEEEEEEC
VDKAITLYEKLRDLSPCLIHSRFKIGDRDEKLRKECNIIIATQVIEVGVNISSEVMITEQ
HHHHHHHHHHHHCCCHHHHHCCCCCCCCHHHHHHHCCEEEEEEEEHHCCCCCCEEEEECC
APITSIVQRVGRLLRDNKKDKGELYIWKSGNYYPYDKDEVENTIKELESKKNDISLKVPS
CCHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHCCCCCEEEEECC
SYGEIVDRVIKPPRGDPDLLRELDNIAENLFATREDLEKLLDKYCTLTNSYVINVAYDTP
HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCC
ASERDLIPLDGDLALKIAIKGNDCVYAYVEEYKPERKVAVDKVNVRETCVEIAKPCRDYR
CCCCCEEECCCCEEEEEEEECCCEEEEEHHHCCCCCCEEEECCCHHHHHHHHHHHHHHHH
KVFYDGDKRYIIYALKIDKELYDEETGLRLRK
HHEECCCCEEEEEEEEECHHHHCCCCCCEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]