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The map label for this gene is ydcM [C]

Identifier: 15898068

GI number: 15898068

Start: 1055184

End: 1056452

Strand: Reverse

Name: ydcM [C]

Synonym: SSO1216

Alternate gene names: 15898068

Gene position: 1056452-1055184 (Counterclockwise)

Preceding gene: 15898069

Following gene: 15898067

Centisome position: 35.31

GC content: 43.97

Gene sequence:

>1269_bases
GTGCTGAAGAACTTAAGAATTGGAAAATTTGAACCGGAAGAGGAATACGTGCACTTCACGTACTCTATCAAGAATAGTGA
GAGGGAGAAGAGCAAAGAGTTAATTAAAGAATACAGAACACTACTACAGAAAGCAATTGACTACTTGTGGAGTTTAACGA
AAATACAAGTAAGAAAAAAGAACGGTAATTACAAGATAACACTACCGAAGAAGAAGGAAGTGTACAAACCACTTAGGGAA
GAGTTGGAGAAGATCAACCACCTCGCGTCACACTACGTTGATAAGGCAATTAATGACGCATTCTCGATCTTGAAGTCGTG
GAGGAAAAGGGCCATAAAGGGGAGAGCTTCGATTGAAAAACCAAGGGTAAAGAAGGCTTACGTTAGGATAAAGACGACTC
TGAGGAAGGTTGTGGGGGAAAGCGTTAGAATAACGGTAAGACCTCATGAGTACATCACCTTCCCGTGGAGTAAGTCATGG
TTCTCAAGAAGGGTTAGGGAGTTGGAACTTGGCGAACCTATAATTAAGGAGGAGAAGGTTTACCTACCATTTCGTTACAA
GTTACCGTGGGTAACACCAGTGAACTTTCTAGCTATTGACTCCAACCTTTATACTCTAGATGCTTATGATGGTGAGAAAT
TCGTTACAATCTCCCTAAAGCAGTTGTACTCCCTTAAGTACTCTATGGAGGTGAAGAGGGCTAAGGTGCAATCATTTGCA
TCAAAGCACACGAAGAGGGGGAGAGAGTTGATGAGGAAGTATTCGCATAGGGAGAGGAATCGCGTTCTGGACTTCGTTCA
CAAGTTTGTAAACGCGTTGTTGGACTTGTACCCCATGACGTTTTTCGCTGTGGAAAAGCTTGATAAAGAGGGTATGTTTG
TAGATGCTAATGAGTCTCTTTCGAGGAAGATTTCTAGGACTGTTTGGAGGAGTATACACAGAGTGTTGAAGTACAAGGCT
CCGCTTTACGGCTCCTTCGTGAAGGAGGTTAACCCGTACCTCACCTCGAGGTCTTGCCCCAGATGTGGGTTTGTATCCCG
AAAGGTTGGTAAGACCTTTGAGTGTGAGAGGTGCGGGTTCAAGTTAGATAGGCAATTGAATGCTTCACTGAATATTTATC
TCAAGATGTGCGGTTTTCCTCACATCCGTGAAATAGCGCGGGTGTGGGTTGGGGTTATCCCGCTAATGGGGCGGAGAGGG
ATGAACGTCCGTGACTTTGGTGAAGCCCAAGGGCTGAGGATTAATATTAAATATCATGAAATCCCATGA

Upstream 100 bases:

>100_bases
AAAGAGGAAGAACTAGTTGAAGACCTAATGTCAGCACTAGTCTCATTCAGTGGGAAACTGTATGGTATGAGAAGTCATGA
ATACGAAAAGGTGAAGAAAT

Downstream 100 bases:

>100_bases
AGCCTAAACCCCGAATATGCTCATCCTTGTTCTGATTTCAAGCCCAACTTCCAGTACGAATTGGAAGTCCAGCTCATTGT
CAAGCTTTACGCTCAATGAG

Product: second ORF in transposon ISC1778

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 422; Mature: 422

Protein sequence:

>422_residues
MLKNLRIGKFEPEEEYVHFTYSIKNSEREKSKELIKEYRTLLQKAIDYLWSLTKIQVRKKNGNYKITLPKKKEVYKPLRE
ELEKINHLASHYVDKAINDAFSILKSWRKRAIKGRASIEKPRVKKAYVRIKTTLRKVVGESVRITVRPHEYITFPWSKSW
FSRRVRELELGEPIIKEEKVYLPFRYKLPWVTPVNFLAIDSNLYTLDAYDGEKFVTISLKQLYSLKYSMEVKRAKVQSFA
SKHTKRGRELMRKYSHRERNRVLDFVHKFVNALLDLYPMTFFAVEKLDKEGMFVDANESLSRKISRTVWRSIHRVLKYKA
PLYGSFVKEVNPYLTSRSCPRCGFVSRKVGKTFECERCGFKLDRQLNASLNIYLKMCGFPHIREIARVWVGVIPLMGRRG
MNVRDFGEAQGLRINIKYHEIP

Sequences:

>Translated_422_residues
MLKNLRIGKFEPEEEYVHFTYSIKNSEREKSKELIKEYRTLLQKAIDYLWSLTKIQVRKKNGNYKITLPKKKEVYKPLRE
ELEKINHLASHYVDKAINDAFSILKSWRKRAIKGRASIEKPRVKKAYVRIKTTLRKVVGESVRITVRPHEYITFPWSKSW
FSRRVRELELGEPIIKEEKVYLPFRYKLPWVTPVNFLAIDSNLYTLDAYDGEKFVTISLKQLYSLKYSMEVKRAKVQSFA
SKHTKRGRELMRKYSHRERNRVLDFVHKFVNALLDLYPMTFFAVEKLDKEGMFVDANESLSRKISRTVWRSIHRVLKYKA
PLYGSFVKEVNPYLTSRSCPRCGFVSRKVGKTFECERCGFKLDRQLNASLNIYLKMCGFPHIREIARVWVGVIPLMGRRG
MNVRDFGEAQGLRINIKYHEIP
>Mature_422_residues
MLKNLRIGKFEPEEEYVHFTYSIKNSEREKSKELIKEYRTLLQKAIDYLWSLTKIQVRKKNGNYKITLPKKKEVYKPLRE
ELEKINHLASHYVDKAINDAFSILKSWRKRAIKGRASIEKPRVKKAYVRIKTTLRKVVGESVRITVRPHEYITFPWSKSW
FSRRVRELELGEPIIKEEKVYLPFRYKLPWVTPVNFLAIDSNLYTLDAYDGEKFVTISLKQLYSLKYSMEVKRAKVQSFA
SKHTKRGRELMRKYSHRERNRVLDFVHKFVNALLDLYPMTFFAVEKLDKEGMFVDANESLSRKISRTVWRSIHRVLKYKA
PLYGSFVKEVNPYLTSRSCPRCGFVSRKVGKTFECERCGFKLDRQLNASLNIYLKMCGFPHIREIARVWVGVIPLMGRRG
MNVRDFGEAQGLRINIKYHEIP

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: In the C-terminal section; belongs to the transposase 35 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001959
- InterPro:   IPR010095 [H]

Pfam domain/function: PF01385 Transposase_2; PF07282 Transposase_35 [H]

EC number: NA

Molecular weight: Translated: 50054; Mature: 50054

Theoretical pI: Translated: 10.62; Mature: 10.62

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKNLRIGKFEPEEEYVHFTYSIKNSEREKSKELIKEYRTLLQKAIDYLWSLTKIQVRKK
CCCCCCCCCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEC
NGNYKITLPKKKEVYKPLREELEKINHLASHYVDKAINDAFSILKSWRKRAIKGRASIEK
CCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
PRVKKAYVRIKTTLRKVVGESVRITVRPHEYITFPWSKSWFSRRVRELELGEPIIKEEKV
CCHHHHHHHHHHHHHHHCCCCEEEEECCCEEEECCCCHHHHHHHHHHHHCCCCCCCCCEE
YLPFRYKLPWVTPVNFLAIDSNLYTLDAYDGEKFVTISLKQLYSLKYSMEVKRAKVQSFA
EEEEEECCCCCCCCEEEEECCCEEEEECCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHH
SKHTKRGRELMRKYSHRERNRVLDFVHKFVNALLDLYPMTFFAVEKLDKEGMFVDANESL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCHHH
SRKISRTVWRSIHRVLKYKAPLYGSFVKEVNPYLTSRSCPRCGFVSRKVGKTFECERCGF
HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCHHHCCCCCCCCCCHHHHHCCCCCHHHCCC
KLDRQLNASLNIYLKMCGFPHIREIARVWVGVIPLMGRRGMNVRDFGEAQGLRINIKYHE
CCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEEC
IP
CC
>Mature Secondary Structure
MLKNLRIGKFEPEEEYVHFTYSIKNSEREKSKELIKEYRTLLQKAIDYLWSLTKIQVRKK
CCCCCCCCCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEC
NGNYKITLPKKKEVYKPLREELEKINHLASHYVDKAINDAFSILKSWRKRAIKGRASIEK
CCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
PRVKKAYVRIKTTLRKVVGESVRITVRPHEYITFPWSKSWFSRRVRELELGEPIIKEEKV
CCHHHHHHHHHHHHHHHCCCCEEEEECCCEEEECCCCHHHHHHHHHHHHCCCCCCCCCEE
YLPFRYKLPWVTPVNFLAIDSNLYTLDAYDGEKFVTISLKQLYSLKYSMEVKRAKVQSFA
EEEEEECCCCCCCCEEEEECCCEEEEECCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHH
SKHTKRGRELMRKYSHRERNRVLDFVHKFVNALLDLYPMTFFAVEKLDKEGMFVDANESL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCHHH
SRKISRTVWRSIHRVLKYKAPLYGSFVKEVNPYLTSRSCPRCGFVSRKVGKTFECERCGF
HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCHHHCCCCCCCCCCHHHHHCCCCCHHHCCC
KLDRQLNASLNIYLKMCGFPHIREIARVWVGVIPLMGRRGMNVRDFGEAQGLRINIKYHE
CCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEEC
IP
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]