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The map label for this gene is 15897920

Identifier: 15897920

GI number: 15897920

Start: 909102

End: 909272

Strand: Direct

Name: 15897920

Synonym: SSO7115

Alternate gene names: NA

Gene position: 909102-909272 (Clockwise)

Preceding gene: 15897919

Following gene: 15897922

Centisome position: 30.38

GC content: 32.75

Gene sequence:

>171_bases
ATGAAGTGGAAAATGAGGAAATGTCCTAAAGACAACATCTATACTTTTAAAGATACTTGCCAAATATGTGGCTCTAAAAC
TGTGATCCCTCATCCATCCAGATTTTCTCCGGAAGACAAATACGTAAAATATAGAATCGAATTAAAAAAAGGAATAACGC
TTAACTGTTAA

Upstream 100 bases:

>100_bases
GTACTAATCCAAAGGAGGCCTCAGAGGCACTAAATCAGATTATATCTAATTTAATTAAGATAGGAAAAGAAGAAAACGTA
GATATAAGTGTGGTTAAGAA

Downstream 100 bases:

>100_bases
CCATTACTGTAGGTTTTAATACTGTACCAGGCTGGGTAAACTGGTATACCATTACCATTATATAAACAGTGTAGTACAAT
CCTCCCGCACCTCCATTTCC

Product: H/ACA RNA-protein complex component Nop10p

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 56; Mature: 56

Protein sequence:

>56_residues
MKWKMRKCPKDNIYTFKDTCQICGSKTVIPHPSRFSPEDKYVKYRIELKKGITLNC

Sequences:

>Translated_56_residues
MKWKMRKCPKDNIYTFKDTCQICGSKTVIPHPSRFSPEDKYVKYRIELKKGITLNC
>Mature_56_residues
MKWKMRKCPKDNIYTFKDTCQICGSKTVIPHPSRFSPEDKYVKYRIELKKGITLNC

Specific function: Involved in ribosome biogenesis; more specifically in 18S rRNA pseudouridylation and in cleavage of pre-rRNA

COG id: COG2260

COG function: function code J; Predicted Zn-ribbon RNA-binding protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the NOP10 family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NOP10_SULSO (Q97Z78)

Other databases:

- EMBL:   AE006641
- PIR:   D90257
- RefSeq:   NP_342525.1
- ProteinModelPortal:   Q97Z78
- SMR:   Q97Z78
- GeneID:   1454094
- GenomeReviews:   AE006641_GR
- KEGG:   sso:SSO7115
- NMPDR:   fig|273057.1.peg.948
- HOGENOM:   HBG498094
- OMA:   PHPPRFS
- ProtClustDB:   PRK13130
- BioCyc:   SSOL273057:SSO7115-MONOMER
- HAMAP:   MF_00803
- InterPro:   IPR007264
- PANTHER:   PTHR13305

Pfam domain/function: PF04135 Nop10p

EC number: NA

Molecular weight: Translated: 6669; Mature: 6669

Theoretical pI: Translated: 10.09; Mature: 10.09

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

7.1 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
10.7 %Cys+Met (Translated Protein)
7.1 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
10.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKWKMRKCPKDNIYTFKDTCQICGSKTVIPHPSRFSPEDKYVKYRIELKKGITLNC
CCCCCCCCCCCCCEEECCHHHHCCCCCCCCCCCCCCCCCCEEEEEEEECCCEEECC
>Mature Secondary Structure
MKWKMRKCPKDNIYTFKDTCQICGSKTVIPHPSRFSPEDKYVKYRIELKKGITLNC
CCCCCCCCCCCCCEEECCHHHHCCCCCCCCCCCCCCCCCCEEEEEEEECCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11427726