Click here to switch to the map view.

The map label for this gene is rpoK [H]

Identifier: 15897794

GI number: 15897794

Start: 771711

End: 771998

Strand: Direct

Name: rpoK [H]

Synonym: SSO6768

Alternate gene names: 15897794

Gene position: 771711-771998 (Clockwise)

Preceding gene: 15897793

Following gene: 15897795

Centisome position: 25.79

GC content: 32.29

Gene sequence:

>288_bases
ATGGGATTAGAGAGGGATGAAATTTTGTCCCAAGATTTACATTTTAATGAAGTTTTTATTTCCTTATGGCAGAATAGACT
AACTAGATACGAGATTGCCAGAGTAATAAGTGCTAGAGCATTACAATTAGCCATGGGTGCACCAGCATTAATTGATATAA
ATAACTTAAGTTCGACTGATGTTATAAGTATAGCTGAGGAGGAGTTTAGGAGAGGAGTTCTTCCAATAACTATTAGAAGA
AGATTACCAAATGGAAAAATAATTTTATTATCTCTTAGAAAGAGTTAA

Upstream 100 bases:

>100_bases
GAAGATTAGTTGGTAGTATGGGTGAAATACTTAAAAAGAATGTTGAATTTGAGGTTCCAAGAGAATGTAAGTTGCCGGAA
GAGTTAAAAGTTGAAGTTTT

Downstream 100 bases:

>100_bases
ATAAGATGAATTTATGTAATGTAAACAACTATTACCTTATAATTGCAGAAAAATCAAAAGCTGCTAAAAAAATCGCAGAA
GCTCTTTCAGAGAAGCCTAT

Product: DNA-directed RNA polymerase subunit K

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 95; Mature: 94

Protein sequence:

>95_residues
MGLERDEILSQDLHFNEVFISLWQNRLTRYEIARVISARALQLAMGAPALIDINNLSSTDVISIAEEEFRRGVLPITIRR
RLPNGKIILLSLRKS

Sequences:

>Translated_95_residues
MGLERDEILSQDLHFNEVFISLWQNRLTRYEIARVISARALQLAMGAPALIDINNLSSTDVISIAEEEFRRGVLPITIRR
RLPNGKIILLSLRKS
>Mature_94_residues
GLERDEILSQDLHFNEVFISLWQNRLTRYEIARVISARALQLAMGAPALIDINNLSSTDVISIAEEEFRRGVLPITIRRR
LPNGKIILLSLRKS

Specific function: DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates [H]

COG id: COG1758

COG function: function code K; DNA-directed RNA polymerase, subunit K/omega

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the archaeal rpoK/eukaryotic RPB6 RNA polymerase subunit family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020708
- InterPro:   IPR006111
- InterPro:   IPR006110
- InterPro:   IPR012293 [H]

Pfam domain/function: PF01192 RNA_pol_Rpb6 [H]

EC number: =2.7.7.6 [H]

Molecular weight: Translated: 10858; Mature: 10727

Theoretical pI: Translated: 10.21; Mature: 10.21

Prosite motif: PS01111 RNA_POL_K_14KD

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGLERDEILSQDLHFNEVFISLWQNRLTRYEIARVISARALQLAMGAPALIDINNLSSTD
CCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCH
VISIAEEEFRRGVLPITIRRRLPNGKIILLSLRKS
HHHHHHHHHHCCCCCEEEEEECCCCCEEEEEECCC
>Mature Secondary Structure 
GLERDEILSQDLHFNEVFISLWQNRLTRYEIARVISARALQLAMGAPALIDINNLSSTD
CCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCH
VISIAEEEFRRGVLPITIRRRLPNGKIILLSLRKS
HHHHHHHHHHCCCCCEEEEEECCCCCEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA