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The map label for this gene is 15897633

Identifier: 15897633

GI number: 15897633

Start: 624206

End: 624718

Strand: Reverse

Name: 15897633

Synonym: SSO0731

Alternate gene names: NA

Gene position: 624718-624206 (Counterclockwise)

Preceding gene: 15897634

Following gene: 297616202

Centisome position: 20.88

GC content: 30.02

Gene sequence:

>513_bases
TTGCATATACACCGTACTAGAATAGTTATAACTTCGTCTAGAGACCCTAGTATTAGGACAAGAAATTTTTTAAATGTTTT
AACTTTTGTATTGCCAGATTCAGTTAAAATTACGCGTGGTAAAAAAAGTAAGATAGAAATATTTGAAAGGGCTATTAATT
TAGGGGCATTATATTTATTGTTCGTATTAGCCAAGAATGGGAATCCACTAAGGATAATTGTTTATGATTTAGAGAGCCTC
TCTATAAAATACTTTTTTAAATTAAGTGGTTTGTCGTTACCTTCTGACTACAACGTATCATTAAACCAGATAAAAGGGCA
TAGTAATGTGTGCATAAAACTAAACGAATGTGATTTTCTAAGGGATTTTCTAGTTGATATGAATATGTACAACTTAACAA
ATAATTGTGACGTTGTTGTGAACTCAAGGCTTATCCATACCAATATTTGTGAACTTCTGTTTATGTTAACTACGAAAAAT
ATTAAGTTTTTGAAGATGATATTAGAAGCGTGA

Upstream 100 bases:

>100_bases
GATGAACATCAATGTCCCTATTGTAAGACTACCGGTAAGGTTATCAGGTTAGCTTCCGGGATATGGTATTGCAAGAAATG
TAATTCTAAGTGGGCAGGTC

Downstream 100 bases:

>100_bases
AAATACAGATTTCGCTCTATGTAGATAATTCCAATAAGATCGAACTACAAGAAATTATATATAATTCAATAATAATTGAA
AAGATAGATACTAAATATGT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 170; Mature: 170

Protein sequence:

>170_residues
MHIHRTRIVITSSRDPSIRTRNFLNVLTFVLPDSVKITRGKKSKIEIFERAINLGALYLLFVLAKNGNPLRIIVYDLESL
SIKYFFKLSGLSLPSDYNVSLNQIKGHSNVCIKLNECDFLRDFLVDMNMYNLTNNCDVVVNSRLIHTNICELLFMLTTKN
IKFLKMILEA

Sequences:

>Translated_170_residues
MHIHRTRIVITSSRDPSIRTRNFLNVLTFVLPDSVKITRGKKSKIEIFERAINLGALYLLFVLAKNGNPLRIIVYDLESL
SIKYFFKLSGLSLPSDYNVSLNQIKGHSNVCIKLNECDFLRDFLVDMNMYNLTNNCDVVVNSRLIHTNICELLFMLTTKN
IKFLKMILEA
>Mature_170_residues
MHIHRTRIVITSSRDPSIRTRNFLNVLTFVLPDSVKITRGKKSKIEIFERAINLGALYLLFVLAKNGNPLRIIVYDLESL
SIKYFFKLSGLSLPSDYNVSLNQIKGHSNVCIKLNECDFLRDFLVDMNMYNLTNNCDVVVNSRLIHTNICELLFMLTTKN
IKFLKMILEA

Specific function: Probably involved in the biogenesis of the ribosome

COG id: COG2136

COG function: function code JA; Predicted exosome subunit/U3 small nucleolar ribonucleoprotein (snoRNP) component, contains IMP4 domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Brix domain

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): BRIX_SULSO (Q9UXB9)

Other databases:

- EMBL:   Y18930
- EMBL:   AE006641
- PIR:   E90221
- RefSeq:   NP_342238.1
- ProteinModelPortal:   Q9UXB9
- SMR:   Q9UXB9
- GeneID:   1454995
- GenomeReviews:   AE006641_GR
- KEGG:   sso:SSO0731
- NMPDR:   fig|273057.1.peg.661
- HOGENOM:   HBG705408
- OMA:   NNCEVIV
- ProtClustDB:   CLSK802846
- BioCyc:   SSOL273057:SSO0731-MONOMER
- GO:   GO:0006412
- HAMAP:   MF_00699
- InterPro:   IPR004154
- InterPro:   IPR007109
- SMART:   SM00879

Pfam domain/function: PF04427 Brix; SSF52954 Anticodon_bd

EC number: NA

Molecular weight: Translated: 19615; Mature: 19615

Theoretical pI: Translated: 9.88; Mature: 9.88

Prosite motif: PS50833 BRIX

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHIHRTRIVITSSRDPSIRTRNFLNVLTFVLPDSVKITRGKKSKIEIFERAINLGALYLL
CCEEEEEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHH
FVLAKNGNPLRIIVYDLESLSIKYFFKLSGLSLPSDYNVSLNQIKGHSNVCIKLNECDFL
HEEECCCCEEEEEEEECCCCEEEEEEEECCCCCCCCCCCEEEEECCCCCEEEEECCCHHH
RDFLVDMNMYNLTNNCDVVVNSRLIHTNICELLFMLTTKNIKFLKMILEA
HHHHHCCCEEECCCCCEEEEECEEEHHHHHHHHHHHHCCCHHHHHHHHCC
>Mature Secondary Structure
MHIHRTRIVITSSRDPSIRTRNFLNVLTFVLPDSVKITRGKKSKIEIFERAINLGALYLL
CCEEEEEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHH
FVLAKNGNPLRIIVYDLESLSIKYFFKLSGLSLPSDYNVSLNQIKGHSNVCIKLNECDFL
HEEECCCCEEEEEEEECCCCEEEEEEEECCCCCCCCCCCEEEEECCCCCEEEEECCCHHH
RDFLVDMNMYNLTNNCDVVVNSRLIHTNICELLFMLTTKNIKFLKMILEA
HHHHHCCCEEECCCCCEEEEECEEEHHHHHHHHHHHHCCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10701121; 11427726