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The map label for this gene is rpl6p

Identifier: 15897608

GI number: 15897608

Start: 604254

End: 604799

Strand: Reverse

Name: rpl6p

Synonym: SSO0702

Alternate gene names: 15897608

Gene position: 604799-604254 (Counterclockwise)

Preceding gene: 15897609

Following gene: 15897607

Centisome position: 20.21

GC content: 35.16

Gene sequence:

>546_bases
ATGCAGATAGTAATTTTGAGGGAAGAAATCGAAATCCCGAAAAATGTTGTTGTTGATCTAAAGGGGTCAATAATTAAGAT
AAAGGGACCTAAAGGTGAAGTAGTTAAAGATTTCAGCTTTGCAAAGGGTATACAAATTAGTTTAGATGGGAATAAAATAG
TGCTAGAGACTACTTTTGCTAATAGACGAAAAAAGGCTGTCTTCTATAGTATAGTTAGTCACATTAAAAATATGATAACT
GGCGTAACAAAGGGTTATAGATATTACCTTAAAATTATATATACGCACTTTCCAACATCTGTAAAGGTAGTAGGGAATGA
AGTTCAAATAACTAATCTAATAGGTGAGAAGAATACTAGAAGGGCACAAATATTGGAAGGCGTCAAGGTTACCGTGAAGG
GTGAAGATATAGTTGTGGAGGGTCCGAATTTAGAGGCTGTTGCTCAGACTGCAGCTAATATCGAGTCGGCTTCAAAGATA
TCTGGTTTTGATAGACGTATCTTCTCGGATGGAATTTTCATCTATAAAAAAGAGGTGATTGAATGA

Upstream 100 bases:

>100_bases
AATTATTGTTTCGACATCTAAAGGTGTAATGTCCCATAAAGAAGCTGCAAGATTGCGAATAGGTGGGGTAGCACTAGGAT
ACGTGTATTGAGGTGTTTTA

Downstream 100 bases:

>100_bases
CCGAAGGAAGAATTCAGTCGTATAGGAAAAAGATTTATGTAATAAGGCAGAAGCTTAAGGCAAAGAAGCCTAAGTTCTTG
CGGTATGATTCTGATAAGTT

Product: 50S ribosomal protein L6P

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 181; Mature: 181

Protein sequence:

>181_residues
MQIVILREEIEIPKNVVVDLKGSIIKIKGPKGEVVKDFSFAKGIQISLDGNKIVLETTFANRRKKAVFYSIVSHIKNMIT
GVTKGYRYYLKIIYTHFPTSVKVVGNEVQITNLIGEKNTRRAQILEGVKVTVKGEDIVVEGPNLEAVAQTAANIESASKI
SGFDRRIFSDGIFIYKKEVIE

Sequences:

>Translated_181_residues
MQIVILREEIEIPKNVVVDLKGSIIKIKGPKGEVVKDFSFAKGIQISLDGNKIVLETTFANRRKKAVFYSIVSHIKNMIT
GVTKGYRYYLKIIYTHFPTSVKVVGNEVQITNLIGEKNTRRAQILEGVKVTVKGEDIVVEGPNLEAVAQTAANIESASKI
SGFDRRIFSDGIFIYKKEVIE
>Mature_181_residues
MQIVILREEIEIPKNVVVDLKGSIIKIKGPKGEVVKDFSFAKGIQISLDGNKIVLETTFANRRKKAVFYSIVSHIKNMIT
GVTKGYRYYLKIIYTHFPTSVKVVGNEVQITNLIGEKNTRRAQILEGVKVTVKGEDIVVEGPNLEAVAQTAANIESASKI
SGFDRRIFSDGIFIYKKEVIE

Specific function: This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center

COG id: COG0097

COG function: function code J; Ribosomal protein L6P/L9E

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L6P family

Homologues:

Organism=Homo sapiens, GI15431303, Length=189, Percent_Identity=34.3915343915344, Blast_Score=125, Evalue=3e-29,
Organism=Homo sapiens, GI67944630, Length=189, Percent_Identity=34.3915343915344, Blast_Score=125, Evalue=3e-29,
Organism=Homo sapiens, GI310133141, Length=165, Percent_Identity=35.1515151515151, Blast_Score=111, Evalue=3e-25,
Organism=Homo sapiens, GI310118095, Length=137, Percent_Identity=36.4963503649635, Blast_Score=99, Evalue=3e-21,
Organism=Caenorhabditis elegans, GI17554746, Length=185, Percent_Identity=34.5945945945946, Blast_Score=110, Evalue=3e-25,
Organism=Saccharomyces cerevisiae, GI6324262, Length=184, Percent_Identity=30.9782608695652, Blast_Score=105, Evalue=5e-24,
Organism=Saccharomyces cerevisiae, GI6321291, Length=187, Percent_Identity=30.4812834224599, Blast_Score=103, Evalue=1e-23,
Organism=Drosophila melanogaster, GI24583602, Length=185, Percent_Identity=29.1891891891892, Blast_Score=103, Evalue=8e-23,
Organism=Drosophila melanogaster, GI17137198, Length=185, Percent_Identity=29.1891891891892, Blast_Score=103, Evalue=8e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RL6_SULSO (Q9UX91)

Other databases:

- EMBL:   Y18930
- EMBL:   AE006641
- PIR:   D90218
- RefSeq:   NP_342213.1
- ProteinModelPortal:   Q9UX91
- GeneID:   1454970
- GenomeReviews:   AE006641_GR
- KEGG:   sso:SSO0702
- NMPDR:   fig|273057.1.peg.636
- HOGENOM:   HBG606796
- OMA:   CSHIENM
- PhylomeDB:   Q9UX91
- ProtClustDB:   PRK05518
- BioCyc:   SSOL273057:SSO0702-MONOMER
- GO:   GO:0005840
- GO:   GO:0006412
- HAMAP:   MF_01365_A
- InterPro:   IPR000702
- InterPro:   IPR020040
- InterPro:   IPR002359
- InterPro:   IPR019907
- Gene3D:   G3DSA:3.90.930.12
- PANTHER:   PTHR11655
- PIRSF:   PIRSF002162
- TIGRFAMs:   TIGR03653

Pfam domain/function: PF00347 Ribosomal_L6; SSF56053 Ribosomal_L6

EC number: NA

Molecular weight: Translated: 20215; Mature: 20215

Theoretical pI: Translated: 10.17; Mature: 10.17

Prosite motif: PS00700 RIBOSOMAL_L6_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQIVILREEIEIPKNVVVDLKGSIIKIKGPKGEVVKDFSFAKGIQISLDGNKIVLETTFA
CEEEEEECCCCCCCEEEEEECCCEEEEECCCCCEEECCHHHCCEEEEECCCEEEEEECCC
NRRKKAVFYSIVSHIKNMITGVTKGYRYYLKIIYTHFPTSVKVVGNEVQITNLIGEKNTR
CCHHHHHHHHHHHHHHHHHHHHHCCHHEEEEEEEEECCCEEEEECCEEEEEEECCCCCCC
RAQILEGVKVTVKGEDIVVEGPNLEAVAQTAANIESASKISGFDRRIFSDGIFIYKKEVI
HHHHHCCEEEEEECCEEEEECCCHHHHHHHHHCHHHHHHCCCHHHHHHCCCEEEEEEECC
E
C
>Mature Secondary Structure
MQIVILREEIEIPKNVVVDLKGSIIKIKGPKGEVVKDFSFAKGIQISLDGNKIVLETTFA
CEEEEEECCCCCCCEEEEEECCCEEEEECCCCCEEECCHHHCCEEEEECCCEEEEEECCC
NRRKKAVFYSIVSHIKNMITGVTKGYRYYLKIIYTHFPTSVKVVGNEVQITNLIGEKNTR
CCHHHHHHHHHHHHHHHHHHHHHCCHHEEEEEEEEECCCEEEEECCEEEEEEECCCCCCC
RAQILEGVKVTVKGEDIVVEGPNLEAVAQTAANIESASKISGFDRRIFSDGIFIYKKEVI
HHHHHCCEEEEEECCEEEEECCCHHHHHHHHHCHHHHHHCCCHHHHHHCCCEEEEEEECC
E
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10701121; 11427726