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The map label for this gene is pdxS [H]

Identifier: 15897491

GI number: 15897491

Start: 502607

End: 503623

Strand: Direct

Name: pdxS [H]

Synonym: SSO0570

Alternate gene names: 15897491

Gene position: 502607-503623 (Clockwise)

Preceding gene: 15897490

Following gene: 15897492

Centisome position: 16.8

GC content: 39.63

Gene sequence:

>1017_bases
ATGAGACTTTATGAATTATCTTTTGCACAAATTGAAGATTTTTTCTATAAACTAGCAGAAGTTAAAGATATTATAAAAGA
TCATGGTCTATTAGAATTTCTACCAGAATTTAAAAAATTGGATTCAACTGTCCATACGGGAACTACTAGAGTGAAGCATG
CATTTCCAATCTTTCAAAAGGGAGGAGTCGTCATGGATATTACAAACGTTCAGCAGGCTCAAATAGCGGAGGAAGCTGGG
GCTGTAGCTGTAATGGTTCTAGACAAGCTACCTTATGATGTTAGAAAGTCTGGTGGTGTGGCTAGAATGGCGGATCCTAA
GATAATTGAGGAGGTAATGAGTTCAATAACAATACCAGTAATGGCGAAAGTGAGAATTGGTCACTATTACGAGGCTAAAC
TACTAGAAGCATTAGGTGTTGACATGATAGATGAAAGTGAAGTCCTAACACCAGCTGACGAGGAACATCACATAAACAAG
TGGGAATTTAGTGTACCGTTCGTCAATGGAGCTAGAAATCTGGGAGAAGCACTAAGAAGAACATCAGAAGGAGCATCAAT
GATAAGAACTAAAGGTGAAGCAGGAACTGGAAATGTAAGTGAGGCAGTAAAGCACATGAAGATAATAAATAGTGAGATAA
GAAGCTTGATAAGTATGTCGGAGGAAGATAGGGTCAAAAAAGCAAGAGAATATCAAGTTCCTTACCAGATAGTTGAGCTC
ACTGCGAAAATCAAGAGATTACCAATAGTCAACTTCGCTGCTGGAGGTATAGCGACACCGGCTGATGCTGCTCTTATGAT
GTGGTTAGGTGCTGATGGGTTGTTTGTTGGTTCTGGTATATTTAAGAGCCAAGATCCGGACGAAAGAGCTAAAGCAGTAG
TCCTAGCGGCAGCTTGCTGGGAATACCCAGAAATCGTATTGGAAGCTCAGAAAATGATAAGCGAACAGAAAAGTATGATG
GGAATTGATATAAAATCTCTAAAACCGGAAGAATTACTACAAGTGAGAGGGCTATGA

Upstream 100 bases:

>100_bases
GGTATTTTTGGGTATTATTAAGATAAGAGCAGAAAATGAGAGAAAGCAAAAAGCTCGTTTAAGATAGGCTTTTAAACCTT
TAGTCAGAATATGTGATGAA

Downstream 100 bases:

>100_bases
AAATAGGTATAATAGCTTATCAAGGGAGTTTCGAAGAACATTTTCTTCAGTTAAAGAGGGCTTTTGATAAACTATCATTA
AATGGCGAGATTATTTCAAT

Product: pyridoxal biosynthesis lyase PdxS

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 338; Mature: 338

Protein sequence:

>338_residues
MRLYELSFAQIEDFFYKLAEVKDIIKDHGLLEFLPEFKKLDSTVHTGTTRVKHAFPIFQKGGVVMDITNVQQAQIAEEAG
AVAVMVLDKLPYDVRKSGGVARMADPKIIEEVMSSITIPVMAKVRIGHYYEAKLLEALGVDMIDESEVLTPADEEHHINK
WEFSVPFVNGARNLGEALRRTSEGASMIRTKGEAGTGNVSEAVKHMKIINSEIRSLISMSEEDRVKKAREYQVPYQIVEL
TAKIKRLPIVNFAAGGIATPADAALMMWLGADGLFVGSGIFKSQDPDERAKAVVLAAACWEYPEIVLEAQKMISEQKSMM
GIDIKSLKPEELLQVRGL

Sequences:

>Translated_338_residues
MRLYELSFAQIEDFFYKLAEVKDIIKDHGLLEFLPEFKKLDSTVHTGTTRVKHAFPIFQKGGVVMDITNVQQAQIAEEAG
AVAVMVLDKLPYDVRKSGGVARMADPKIIEEVMSSITIPVMAKVRIGHYYEAKLLEALGVDMIDESEVLTPADEEHHINK
WEFSVPFVNGARNLGEALRRTSEGASMIRTKGEAGTGNVSEAVKHMKIINSEIRSLISMSEEDRVKKAREYQVPYQIVEL
TAKIKRLPIVNFAAGGIATPADAALMMWLGADGLFVGSGIFKSQDPDERAKAVVLAAACWEYPEIVLEAQKMISEQKSMM
GIDIKSLKPEELLQVRGL
>Mature_338_residues
MRLYELSFAQIEDFFYKLAEVKDIIKDHGLLEFLPEFKKLDSTVHTGTTRVKHAFPIFQKGGVVMDITNVQQAQIAEEAG
AVAVMVLDKLPYDVRKSGGVARMADPKIIEEVMSSITIPVMAKVRIGHYYEAKLLEALGVDMIDESEVLTPADEEHHINK
WEFSVPFVNGARNLGEALRRTSEGASMIRTKGEAGTGNVSEAVKHMKIINSEIRSLISMSEEDRVKKAREYQVPYQIVEL
TAKIKRLPIVNFAAGGIATPADAALMMWLGADGLFVGSGIFKSQDPDERAKAVVLAAACWEYPEIVLEAQKMISEQKSMM
GIDIKSLKPEELLQVRGL

Specific function: Involved in the production of pyridoxal phosphate, probably by incorporating ammonia into the pyridine ring [H]

COG id: COG0214

COG function: function code H; Pyridoxine biosynthesis enzyme

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the pdxS/SNZ family [H]

Homologues:

Organism=Saccharomyces cerevisiae, GI6323743, Length=279, Percent_Identity=56.2724014336918, Blast_Score=309, Evalue=3e-85,
Organism=Saccharomyces cerevisiae, GI6321049, Length=281, Percent_Identity=55.5160142348754, Blast_Score=304, Evalue=1e-83,
Organism=Saccharomyces cerevisiae, GI6323996, Length=281, Percent_Identity=55.5160142348754, Blast_Score=303, Evalue=2e-83,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR011060
- InterPro:   IPR001852 [H]

Pfam domain/function: PF01680 SOR_SNZ [H]

EC number: NA

Molecular weight: Translated: 37496; Mature: 37496

Theoretical pI: Translated: 5.50; Mature: 5.50

Prosite motif: PS01235 PDXS_SNZ_1 ; PS51129 PDXS_SNZ_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
4.4 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLYELSFAQIEDFFYKLAEVKDIIKDHGLLEFLPEFKKLDSTVHTGTTRVKHAFPIFQK
CEEEECHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCHHHHHHCCHHHC
GGVVMDITNVQQAQIAEEAGAVAVMVLDKLPYDVRKSGGVARMADPKIIEEVMSSITIPV
CCEEEEECCCHHHHHHHHHCCEEEEEEHHCCHHHHHCCCEEECCCHHHHHHHHHHCCHHH
MAKVRIGHYYEAKLLEALGVDMIDESEVLTPADEEHHINKWEFSVPFVNGARNLGEALRR
EEEEHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHH
TSEGASMIRTKGEAGTGNVSEAVKHMKIINSEIRSLISMSEEDRVKKAREYQVPYQIVEL
HHCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHH
TAKIKRLPIVNFAAGGIATPADAALMMWLGADGLFVGSGIFKSQDPDERAKAVVLAAACW
HHHHHHCCEEEECCCCCCCCHHHHHHHHCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHH
EYPEIVLEAQKMISEQKSMMGIDIKSLKPEELLQVRGL
HHHHHHHHHHHHHHHHHHHHCCCHHCCCHHHHHHHCCC
>Mature Secondary Structure
MRLYELSFAQIEDFFYKLAEVKDIIKDHGLLEFLPEFKKLDSTVHTGTTRVKHAFPIFQK
CEEEECHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCHHHHHHCCHHHC
GGVVMDITNVQQAQIAEEAGAVAVMVLDKLPYDVRKSGGVARMADPKIIEEVMSSITIPV
CCEEEEECCCHHHHHHHHHCCEEEEEEHHCCHHHHHCCCEEECCCHHHHHHHHHHCCHHH
MAKVRIGHYYEAKLLEALGVDMIDESEVLTPADEEHHINKWEFSVPFVNGARNLGEALRR
EEEEHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHH
TSEGASMIRTKGEAGTGNVSEAVKHMKIINSEIRSLISMSEEDRVKKAREYQVPYQIVEL
HHCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHH
TAKIKRLPIVNFAAGGIATPADAALMMWLGADGLFVGSGIFKSQDPDERAKAVVLAAACW
HHHHHHCCEEEECCCCCCCCHHHHHHHHCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHH
EYPEIVLEAQKMISEQKSMMGIDIKSLKPEELLQVRGL
HHHHHHHHHHHHHHHHHHHHCCCHHCCCHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA