Click here to switch to the map view.

The map label for this gene is rpoE1 [H]

Identifier: 15897347

GI number: 15897347

Start: 361016

End: 361558

Strand: Direct

Name: rpoE1 [H]

Synonym: SSO0415

Alternate gene names: 15897347

Gene position: 361016-361558 (Clockwise)

Preceding gene: 15897346

Following gene: 15897348

Centisome position: 12.07

GC content: 37.75

Gene sequence:

>543_bases
ATGTATAAACTTATTAAAGCACGTAGCATTGTGAGGATTCCTCCAAATGAATTTGGCAAGCCGTTAAACGAGATAGCTTT
AAACGAACTAAGGCAGCAATATCAAGAAAAGATCCTCAAGGATTTAGGTCTAGTTTTAGCTATATTAAATGTGAAAACCA
GTGAGGAAGGGATACTAGTATTTGGCGATGGCGCTACTTACCATGAGGTTGAATTCGATATGATAACCTATGTACCAGTT
GTACAAGAGGTAGTTGAGGGTGAGGTTTTACAAGTTGACAACTATGGCATATTCGTTAATTTAGGTCCAATGGATGGTCT
TGTTCACATTTCCCAAATAACAGATGATACACTAAAATATGACAATGTAAGAGGTATAATATTCGGAGAGAAATCTAAGA
AAGTGATACAAAAGGGTGATAAGGTAAGAGCAAGGGTAATAAGCGTCGCATCTACGGTAACAGGTCGGTTGCCTAGAATT
GCTTTAACAATGAGGCAACCCTACTTAGGTAAACTAGAGTGGATAACACAGACTAAGAAGTGA

Upstream 100 bases:

>100_bases
TGATAAGGAATTAAAAAATGATGCAATTAAAAAGGGTATAGGAGTTTTATTTCTTCAGAATAGGAGTAAAATTATAAAAT
CCTTATATCCTATCTAACGT

Downstream 100 bases:

>100_bases
GTATAAATGGCTAAGAAATCAGTCTTTAAAGCATGCAAAAATTGTAAGGCATTAGTAGATACTGATAAGGAAACATGTCC
AGTATGTGGAAGTACTAGTT

Product: DNA-directed RNA polymerase subunit E'

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 180; Mature: 180

Protein sequence:

>180_residues
MYKLIKARSIVRIPPNEFGKPLNEIALNELRQQYQEKILKDLGLVLAILNVKTSEEGILVFGDGATYHEVEFDMITYVPV
VQEVVEGEVLQVDNYGIFVNLGPMDGLVHISQITDDTLKYDNVRGIIFGEKSKKVIQKGDKVRARVISVASTVTGRLPRI
ALTMRQPYLGKLEWITQTKK

Sequences:

>Translated_180_residues
MYKLIKARSIVRIPPNEFGKPLNEIALNELRQQYQEKILKDLGLVLAILNVKTSEEGILVFGDGATYHEVEFDMITYVPV
VQEVVEGEVLQVDNYGIFVNLGPMDGLVHISQITDDTLKYDNVRGIIFGEKSKKVIQKGDKVRARVISVASTVTGRLPRI
ALTMRQPYLGKLEWITQTKK
>Mature_180_residues
MYKLIKARSIVRIPPNEFGKPLNEIALNELRQQYQEKILKDLGLVLAILNVKTSEEGILVFGDGATYHEVEFDMITYVPV
VQEVVEGEVLQVDNYGIFVNLGPMDGLVHISQITDDTLKYDNVRGIIFGEKSKKVIQKGDKVRARVISVASTVTGRLPRI
ALTMRQPYLGKLEWITQTKK

Specific function: DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates [H]

COG id: COG1095

COG function: function code K; DNA-directed RNA polymerase, subunit E'

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S1 motif domain [H]

Homologues:

Organism=Homo sapiens, GI24475814, Length=203, Percent_Identity=23.1527093596059, Blast_Score=74, Evalue=8e-14,
Organism=Homo sapiens, GI65301161, Length=203, Percent_Identity=23.1527093596059, Blast_Score=74, Evalue=8e-14,
Organism=Saccharomyces cerevisiae, GI6322705, Length=101, Percent_Identity=33.6633663366337, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR003029
- InterPro:   IPR022967
- InterPro:   IPR005576
- InterPro:   IPR004519 [H]

Pfam domain/function: PF03876 RNA_pol_Rpb7_N; PF00575 S1 [H]

EC number: =2.7.7.6 [H]

Molecular weight: Translated: 20329; Mature: 20329

Theoretical pI: Translated: 9.22; Mature: 9.22

Prosite motif: PS50126 S1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYKLIKARSIVRIPPNEFGKPLNEIALNELRQQYQEKILKDLGLVLAILNVKTSEEGILV
CCCCCCCCEEEECCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEE
FGDGATYHEVEFDMITYVPVVQEVVEGEVLQVDNYGIFVNLGPMDGLVHISQITDDTLKY
EECCCEEEEEEHHHHHHHHHHHHHHCCCEEEEECCEEEEEECCCCCEEEEEHHCCCHHEE
DNVRGIIFGEKSKKVIQKGDKVRARVISVASTVTGRLPRIALTMRQPYLGKLEWITQTKK
CCEEEEEECCCHHHHHHCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHCCCCC
>Mature Secondary Structure
MYKLIKARSIVRIPPNEFGKPLNEIALNELRQQYQEKILKDLGLVLAILNVKTSEEGILV
CCCCCCCCEEEECCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEE
FGDGATYHEVEFDMITYVPVVQEVVEGEVLQVDNYGIFVNLGPMDGLVHISQITDDTLKY
EECCCEEEEEEHHHHHHHHHHHHHHCCCEEEEECCEEEEEECCCCCEEEEEHHCCCHHEE
DNVRGIIFGEKSKKVIQKGDKVRARVISVASTVTGRLPRIALTMRQPYLGKLEWITQTKK
CCEEEEEECCCHHHHHHCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8127719 [H]