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The map label for this gene is 15897318

Identifier: 15897318

GI number: 15897318

Start: 329319

End: 330797

Strand: Reverse

Name: 15897318

Synonym: SSO0386

Alternate gene names: NA

Gene position: 330797-329319 (Counterclockwise)

Preceding gene: 15897319

Following gene: 15897317

Centisome position: 11.06

GC content: 36.98

Gene sequence:

>1479_bases
TTGCCCATGACATTTGTTTTCATAACGGTAGGATTTTCAATTACTATATTCTTTTCATTAGTCTCAATTATCACTCTAGT
TGCATTTATTTGTTCAGTTTTTATTCCCATTCTTTCCATTTTCTTTAGATCAGAGGGTTTTATTTTTGCCATTACATGTT
TTATTGAAGAGGAAGTAAACTTAATAGTTTGCGGTTACGATATTTCACAAATGAATTACTTTCTGAAAATATTAGGTGGT
GGAAGAGAAGTAGGTAGATCTGCCATTGAGGTTGGAAATAGTGATGGTAGCATAATACTAGACTATGGTGTAAACTTCGA
TGAAAAGGACAATCCTAATTTTCCGTTGCAAGAAATGCCAGGTAAGGTGAAGGGCTTTGTCGTATCTCATGCACATCTAG
ACCATATAGGAGCTTTACCTATTTATCAAATAGGTTCATTGAACACTAAGGTCTATGGCACTGTGGCCACTAGGATAATA
ACTGAGACAATGCTAAAGGATTTTCTAAAGCTTTCTGGAGCTAAAATACCGTACGAATGGGTTGAAGTAAGGAAAACAAT
GGACAATTTCATGGCAATTGGGTATGGGGAAGAAGTAGAAATAGATAGTTTGAAAGTTTCGCTTTACAATGCTGGGCACA
TACCGGGAAGTTCTATTATTAAGGTATCGTCAGAGAAAGGCGTAATAGCCTTTACGGGGGATATTAACTTAACGGAGACC
AAATTAATGAAACCTGCAGAAATTGAGAATATAGGAGATGCAAATGTTTTAGTTATGGAGTCAACTTATGGCAAGTTTAA
TCATCCAAATAGAAAAGATGTTGAAAACGATTTCTACGATAAGGTTATGGAAGTAGTAGAAAGCGGTGGGACTGTTTTAG
TACCAGCTTTTAGTTTAGCTAGGAGCCAGGAAGTCTTATCTGTATTGGCGGAAAGGAATTTTCCTTATCCAGTTTATTAT
GACGGTATGTCCAGAGAGATAACGGAGATAATGCTTGGTTTTAAAGAGTTTTTGAATAGACCAGATCTGCTTAAGAAGGC
TTATGATAATTTCAATTACGTTAAGGGCTGGGAGGATAGGCATAGAGCATGGAAGGAGAAAGGGGTTATCGTTGCGAGTG
CGGGAATGCTTAAGGGTGGGCCAGCCGTTTATTACTTCAAAAAGCTATCAGAAAATAGTAAGAATGCGGTATTCTTAGTC
AGTTACCAAGCTATTAACACTCCGGGAAGGAAGCTATTAGAAATGGGTAAGTTCGATGAGTATTCTGGATTGTTAAAGGC
TAGGTTAGAAATCTTTGACTTTTCAAGTCACGCTGGAAGAAGACAGTTGTTGGAAATAGTTAAATCCGTTAAGGATTTGG
AAAAAGTCGTGCTCGTTCATGGTTCTCCAGATAATGAATCATCTTTAGCGGATCTAATAAAGCAAGAGATTGGGGTTGAA
GTTATAACTCCGGAAAATGGTCAAGAAATTAGTTTATAA

Upstream 100 bases:

>100_bases
AGTTTGTTCAGCGACAAATTTTACATCTTCATCTTTTATTTCAATTTGACTCTGCTTTTTCTCTTCCCTGGTTTGCCCAC
CATATATAACAATTGCCTCA

Downstream 100 bases:

>100_bases
ACGTTTAAAGTAACCGTAATTTGTGATAATACTATTTATTCACGCATCTGACTTCTCATTTAATGTAAAGGAAAGAGCTA
TTAAGGAACCAGAAGAAGCA

Product: mRNA 3'-end processing factor, putative

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 492; Mature: 491

Protein sequence:

>492_residues
MPMTFVFITVGFSITIFFSLVSIITLVAFICSVFIPILSIFFRSEGFIFAITCFIEEEVNLIVCGYDISQMNYFLKILGG
GREVGRSAIEVGNSDGSIILDYGVNFDEKDNPNFPLQEMPGKVKGFVVSHAHLDHIGALPIYQIGSLNTKVYGTVATRII
TETMLKDFLKLSGAKIPYEWVEVRKTMDNFMAIGYGEEVEIDSLKVSLYNAGHIPGSSIIKVSSEKGVIAFTGDINLTET
KLMKPAEIENIGDANVLVMESTYGKFNHPNRKDVENDFYDKVMEVVESGGTVLVPAFSLARSQEVLSVLAERNFPYPVYY
DGMSREITEIMLGFKEFLNRPDLLKKAYDNFNYVKGWEDRHRAWKEKGVIVASAGMLKGGPAVYYFKKLSENSKNAVFLV
SYQAINTPGRKLLEMGKFDEYSGLLKARLEIFDFSSHAGRRQLLEIVKSVKDLEKVVLVHGSPDNESSLADLIKQEIGVE
VITPENGQEISL

Sequences:

>Translated_492_residues
MPMTFVFITVGFSITIFFSLVSIITLVAFICSVFIPILSIFFRSEGFIFAITCFIEEEVNLIVCGYDISQMNYFLKILGG
GREVGRSAIEVGNSDGSIILDYGVNFDEKDNPNFPLQEMPGKVKGFVVSHAHLDHIGALPIYQIGSLNTKVYGTVATRII
TETMLKDFLKLSGAKIPYEWVEVRKTMDNFMAIGYGEEVEIDSLKVSLYNAGHIPGSSIIKVSSEKGVIAFTGDINLTET
KLMKPAEIENIGDANVLVMESTYGKFNHPNRKDVENDFYDKVMEVVESGGTVLVPAFSLARSQEVLSVLAERNFPYPVYY
DGMSREITEIMLGFKEFLNRPDLLKKAYDNFNYVKGWEDRHRAWKEKGVIVASAGMLKGGPAVYYFKKLSENSKNAVFLV
SYQAINTPGRKLLEMGKFDEYSGLLKARLEIFDFSSHAGRRQLLEIVKSVKDLEKVVLVHGSPDNESSLADLIKQEIGVE
VITPENGQEISL
>Mature_491_residues
PMTFVFITVGFSITIFFSLVSIITLVAFICSVFIPILSIFFRSEGFIFAITCFIEEEVNLIVCGYDISQMNYFLKILGGG
REVGRSAIEVGNSDGSIILDYGVNFDEKDNPNFPLQEMPGKVKGFVVSHAHLDHIGALPIYQIGSLNTKVYGTVATRIIT
ETMLKDFLKLSGAKIPYEWVEVRKTMDNFMAIGYGEEVEIDSLKVSLYNAGHIPGSSIIKVSSEKGVIAFTGDINLTETK
LMKPAEIENIGDANVLVMESTYGKFNHPNRKDVENDFYDKVMEVVESGGTVLVPAFSLARSQEVLSVLAERNFPYPVYYD
GMSREITEIMLGFKEFLNRPDLLKKAYDNFNYVKGWEDRHRAWKEKGVIVASAGMLKGGPAVYYFKKLSENSKNAVFLVS
YQAINTPGRKLLEMGKFDEYSGLLKARLEIFDFSSHAGRRQLLEIVKSVKDLEKVVLVHGSPDNESSLADLIKQEIGVEV
ITPENGQEISL

Specific function: Unknown

COG id: COG1236

COG function: function code J; Predicted exonuclease of the beta-lactamase fold involved in RNA processing

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the metallo-beta-lactamase superfamily. RNA-metabolizing metallo-beta-lactamase-like family [H]

Homologues:

Organism=Homo sapiens, GI33300633, Length=445, Percent_Identity=30.561797752809, Blast_Score=187, Evalue=3e-47,
Organism=Homo sapiens, GI7706427, Length=459, Percent_Identity=28.322440087146, Blast_Score=169, Evalue=5e-42,
Organism=Caenorhabditis elegans, GI32564696, Length=437, Percent_Identity=25.1716247139588, Blast_Score=152, Evalue=5e-37,
Organism=Caenorhabditis elegans, GI32566029, Length=444, Percent_Identity=27.7027027027027, Blast_Score=138, Evalue=6e-33,
Organism=Saccharomyces cerevisiae, GI6323307, Length=465, Percent_Identity=25.1612903225806, Blast_Score=127, Evalue=4e-30,
Organism=Drosophila melanogaster, GI21358523, Length=438, Percent_Identity=28.9954337899543, Blast_Score=169, Evalue=3e-42,
Organism=Drosophila melanogaster, GI24648013, Length=449, Percent_Identity=28.2850779510022, Blast_Score=156, Evalue=2e-38,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022712
- InterPro:   IPR001279
- InterPro:   IPR011108 [H]

Pfam domain/function: PF10996 Beta-Casp; PF00753 Lactamase_B; PF07521 RMMBL [H]

EC number: NA

Molecular weight: Translated: 54945; Mature: 54814

Theoretical pI: Translated: 5.08; Mature: 5.08

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPMTFVFITVGFSITIFFSLVSIITLVAFICSVFIPILSIFFRSEGFIFAITCFIEEEVN
CCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCC
LIVCGYDISQMNYFLKILGGGREVGRSAIEVGNSDGSIILDYGVNFDEKDNPNFPLQEMP
EEEECCCHHHHHHHHHHCCCCHHHCCHHHHCCCCCCCEEEEECCCCCCCCCCCCCHHHCC
GKVKGFVVSHAHLDHIGALPIYQIGSLNTKVYGTVATRIITETMLKDFLKLSGAKIPYEW
CCCEEEEEECCHHHHCCCCCCEEECCCCCEEHHHHHHHHHHHHHHHHHHHHCCCCCCHHH
VEVRKTMDNFMAIGYGEEVEIDSLKVSLYNAGHIPGSSIIKVSSEKGVIAFTGDINLTET
HHHHHHHHHHEEECCCCEEEEEEEEEEEEECCCCCCCCEEEEECCCCEEEEECCCCCCHH
KLMKPAEIENIGDANVLVMESTYGKFNHPNRKDVENDFYDKVMEVVESGGTVLVPAFSLA
HCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEECHHHH
RSQEVLSVLAERNFPYPVYYDGMSREITEIMLGFKEFLNRPDLLKKAYDNFNYVKGWEDR
HHHHHHHHHHHCCCCCCEEECCCHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCHHH
HRAWKEKGVIVASAGMLKGGPAVYYFKKLSENSKNAVFLVSYQAINTPGRKLLEMGKFDE
HHHHHHCCEEEEECCCCCCCCCEEEEHHHCCCCCCEEEEEEEEECCCCHHHHHHHCCCCH
YSGLLKARLEIFDFSSHAGRRQLLEIVKSVKDLEKVVLVHGSPDNESSLADLIKQEIGVE
HHHHHHHHHHHEECCCCCCHHHHHHHHHHHHHHHHEEEEECCCCCHHHHHHHHHHHCCEE
VITPENGQEISL
EECCCCCCCCCC
>Mature Secondary Structure 
PMTFVFITVGFSITIFFSLVSIITLVAFICSVFIPILSIFFRSEGFIFAITCFIEEEVN
CEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCC
LIVCGYDISQMNYFLKILGGGREVGRSAIEVGNSDGSIILDYGVNFDEKDNPNFPLQEMP
EEEECCCHHHHHHHHHHCCCCHHHCCHHHHCCCCCCCEEEEECCCCCCCCCCCCCHHHCC
GKVKGFVVSHAHLDHIGALPIYQIGSLNTKVYGTVATRIITETMLKDFLKLSGAKIPYEW
CCCEEEEEECCHHHHCCCCCCEEECCCCCEEHHHHHHHHHHHHHHHHHHHHCCCCCCHHH
VEVRKTMDNFMAIGYGEEVEIDSLKVSLYNAGHIPGSSIIKVSSEKGVIAFTGDINLTET
HHHHHHHHHHEEECCCCEEEEEEEEEEEEECCCCCCCCEEEEECCCCEEEEECCCCCCHH
KLMKPAEIENIGDANVLVMESTYGKFNHPNRKDVENDFYDKVMEVVESGGTVLVPAFSLA
HCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEECHHHH
RSQEVLSVLAERNFPYPVYYDGMSREITEIMLGFKEFLNRPDLLKKAYDNFNYVKGWEDR
HHHHHHHHHHHCCCCCCEEECCCHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCHHH
HRAWKEKGVIVASAGMLKGGPAVYYFKKLSENSKNAVFLVSYQAINTPGRKLLEMGKFDE
HHHHHHCCEEEEECCCCCCCCCEEEEHHHCCCCCCEEEEEEEEECCCCHHHHHHHCCCCH
YSGLLKARLEIFDFSSHAGRRQLLEIVKSVKDLEKVVLVHGSPDNESSLADLIKQEIGVE
HHHHHHHHHHHEECCCCCCHHHHHHHHHHHHHHHHEEEEECCCCCHHHHHHHHHHHCCEE
VITPENGQEISL
EECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]