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The map label for this gene is ocd-like1 [H]

Identifier: 15897312

GI number: 15897312

Start: 321348

End: 322277

Strand: Reverse

Name: ocd-like1 [H]

Synonym: SSO0378

Alternate gene names: 15897312

Gene position: 322277-321348 (Counterclockwise)

Preceding gene: 15897314

Following gene: 15897309

Centisome position: 10.77

GC content: 35.27

Gene sequence:

>930_bases
ATGATTATCTTAACAAGGAAAGATCTAGATGAATTATTAAAAGCTGAAATAGCCGTAAGCTCAGTGAAAGAGGCATTCAA
ATTGCATTATCAGAAGAAGGTAGATCAACCACAAAGGTTAGTCATGAGTGTAAAGGGAAATTGGTGGGGCTTAATGCCAT
CATCAACTGATTATTCTTTTGTGACCAAAATAGTTAACGTTATACCTGAGAATAAAGAGAGAGGGTTACCATTAGTTCAA
GGTGTTGTAATATTGATGTCACCAGATACTGGAGAGATTTTAGCGATAATTGATGGGACAACGCTAACTGCAATAAGAAC
CGCTGCAGCAAGTATATTATCGACTGAGTTAGCTATAAATGGTAGAAATATAGGCATCTTAGGAATAATAGGTGCAGGCA
CTGAAGCATACTATCACGCAAAATTAGCCTTAGAGTACTTTAAAGTTCAGAAGCTTTACATTTCAGCTAGAAAATCTCAC
TTCGAATTAGCTAAGAGAGTTGGCGGTGAGGCTACGGACTTAGAAACGTTATTGAAGAATTCAGATACTATCTTCGCAAC
CACCTCATCTAATTTTCCAGTTGTATTAGGTAAGTATCTAAAAGATGTATTTCATTTATCAAGTATAGGAGCCCATACTC
CAGATTCGAGGGAATTAGATGATGATACTATAATAAAGGTAAAGAGTTATATTGTCGACTCGTTAGAAGCAGTTTCTAAA
GAGAGTGGTGATTATATCATTCCTAAACAAAGAGGATTATTGGAAAACAAAATGATAAAAGAACTGGGAGAAATAATAGA
AAAGGGAATAAAAATAGAAAGACCATCATTATTTAAAACTGTGGGGATTGCTGTAGAGGATAACATAACTGCCCACATAG
CTTATCAAGAGGCTTTAAGGAGAGGAATTGGTTTTAACGTTTCCATATAA

Upstream 100 bases:

>100_bases
TTAAATAATACTGCATATAGTCCTAGGGTTAATTCTTATGCTAATCAGAAAATTCCAAAATAATGTTAAAGTTTATAATC
GATAAAAGGATCTTAACTTA

Downstream 100 bases:

>100_bases
TCTCTTGGACTTTCTCTTGCTTATTAACGTATAATGCTAAAACAAATAGCAATGAGGATAAACGATTAAGGTATTTAACG
TGAACGTCCTTCGCCTTACT

Product: ornithine cyclodeaminase related protein (ocd-like1)

Products: NA

Alternate protein names: OCD 2 [H]

Number of amino acids: Translated: 309; Mature: 309

Protein sequence:

>309_residues
MIILTRKDLDELLKAEIAVSSVKEAFKLHYQKKVDQPQRLVMSVKGNWWGLMPSSTDYSFVTKIVNVIPENKERGLPLVQ
GVVILMSPDTGEILAIIDGTTLTAIRTAAASILSTELAINGRNIGILGIIGAGTEAYYHAKLALEYFKVQKLYISARKSH
FELAKRVGGEATDLETLLKNSDTIFATTSSNFPVVLGKYLKDVFHLSSIGAHTPDSRELDDDTIIKVKSYIVDSLEAVSK
ESGDYIIPKQRGLLENKMIKELGEIIEKGIKIERPSLFKTVGIAVEDNITAHIAYQEALRRGIGFNVSI

Sequences:

>Translated_309_residues
MIILTRKDLDELLKAEIAVSSVKEAFKLHYQKKVDQPQRLVMSVKGNWWGLMPSSTDYSFVTKIVNVIPENKERGLPLVQ
GVVILMSPDTGEILAIIDGTTLTAIRTAAASILSTELAINGRNIGILGIIGAGTEAYYHAKLALEYFKVQKLYISARKSH
FELAKRVGGEATDLETLLKNSDTIFATTSSNFPVVLGKYLKDVFHLSSIGAHTPDSRELDDDTIIKVKSYIVDSLEAVSK
ESGDYIIPKQRGLLENKMIKELGEIIEKGIKIERPSLFKTVGIAVEDNITAHIAYQEALRRGIGFNVSI
>Mature_309_residues
MIILTRKDLDELLKAEIAVSSVKEAFKLHYQKKVDQPQRLVMSVKGNWWGLMPSSTDYSFVTKIVNVIPENKERGLPLVQ
GVVILMSPDTGEILAIIDGTTLTAIRTAAASILSTELAINGRNIGILGIIGAGTEAYYHAKLALEYFKVQKLYISARKSH
FELAKRVGGEATDLETLLKNSDTIFATTSSNFPVVLGKYLKDVFHLSSIGAHTPDSRELDDDTIIKVKSYIVDSLEAVSK
ESGDYIIPKQRGLLENKMIKELGEIIEKGIKIERPSLFKTVGIAVEDNITAHIAYQEALRRGIGFNVSI

Specific function: Unknown

COG id: COG2423

COG function: function code E; Predicted ornithine cyclodeaminase, mu-crystallin homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ornithine cyclodeaminase family [H]

Homologues:

Organism=Homo sapiens, GI4503065, Length=278, Percent_Identity=34.8920863309352, Blast_Score=134, Evalue=7e-32,
Organism=Homo sapiens, GI62241008, Length=276, Percent_Identity=34.7826086956522, Blast_Score=134, Evalue=9e-32,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016040
- InterPro:   IPR003462 [H]

Pfam domain/function: PF02423 OCD_Mu_crystall [H]

EC number: =4.3.1.12 [H]

Molecular weight: Translated: 34090; Mature: 34090

Theoretical pI: Translated: 7.87; Mature: 7.87

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIILTRKDLDELLKAEIAVSSVKEAFKLHYQKKVDQPQRLVMSVKGNWWGLMPSSTDYSF
CEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHEEEEECCCEEECCCCCCCHHH
VTKIVNVIPENKERGLPLVQGVVILMSPDTGEILAIIDGTTLTAIRTAAASILSTELAIN
HHHHHHHCCCCCCCCCCHHHCEEEEECCCCCCEEEEECCCHHHHHHHHHHHHHHHHEEEC
GRNIGILGIIGAGTEAYYHAKLALEYFKVQKLYISARKSHFELAKRVGGEATDLETLLKN
CCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCC
SDTIFATTSSNFPVVLGKYLKDVFHLSSIGAHTPDSRELDDDTIIKVKSYIVDSLEAVSK
CCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHC
ESGDYIIPKQRGLLENKMIKELGEIIEKGIKIERPSLFKTVGIAVEDNITAHIAYQEALR
CCCCEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCEEEECCCEEEEEHHHHHH
RGIGFNVSI
HCCCCCCCC
>Mature Secondary Structure
MIILTRKDLDELLKAEIAVSSVKEAFKLHYQKKVDQPQRLVMSVKGNWWGLMPSSTDYSF
CEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHEEEEECCCEEECCCCCCCHHH
VTKIVNVIPENKERGLPLVQGVVILMSPDTGEILAIIDGTTLTAIRTAAASILSTELAIN
HHHHHHHCCCCCCCCCCHHHCEEEEECCCCCCEEEEECCCHHHHHHHHHHHHHHHHEEEC
GRNIGILGIIGAGTEAYYHAKLALEYFKVQKLYISARKSHFELAKRVGGEATDLETLLKN
CCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCC
SDTIFATTSSNFPVVLGKYLKDVFHLSSIGAHTPDSRELDDDTIIKVKSYIVDSLEAVSK
CCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHC
ESGDYIIPKQRGLLENKMIKELGEIIEKGIKIERPSLFKTVGIAVEDNITAHIAYQEALR
CCCCEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCEEEECCCEEEEEHHHHHH
RGIGFNVSI
HCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11481432 [H]