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The map label for this gene is xerC/D [C]

Identifier: 15897309

GI number: 15897309

Start: 318365

End: 319240

Strand: Reverse

Name: xerC/D [C]

Synonym: SSO0375

Alternate gene names: 15897309

Gene position: 319240-318365 (Counterclockwise)

Preceding gene: 15897312

Following gene: 15897304

Centisome position: 10.67

GC content: 33.79

Gene sequence:

>876_bases
GTGAAGCTTGATCTAGGCTCTCCACCAGAATCCGGAGATCTTTATAACGCTTTCATAAACGCATTAATTATCGCAGGAGC
TGGAAATGGAACTATAAAGCTTTACTCTACCGCAGTAAGGGACTTTCTAGACTTTATAAACAAAGATCCTAGAAAGGTTA
CTAGTGAAGATCTAAACAGATGGATTTCTAGTCTGTTAAATAGAGAGGGTAAGGTTAAAGGAGACGAAGTAGAAAAGAAG
AGAGCCAAGAGTGTTACCATTAGATATTATATAATTGCAGTGAGAAGATTCCTTAAATGGATTAACGTTTCTGTAAGGCC
ACCTATTCCTAAAGTAAGGAGAAAAGAAGTTAAGGCTCTGGACGAGATTCAGATCCAGAAAGTACTTAACGCATGTAAGA
GGACTAAGGATAAATTAATAATAAGGTTACTATTAGATACTGGGTTACGTGCAAATGAATTGTTATCGGTATTAGTAAAG
GATATAGATTTGGAAAATAACATGATTAGAGTTAGGAATACTAAGAATGGAGAGGAAAGAATAGTTTTCTTTACTGATGA
GACTAAACTGCTGTTGAGAAAGTACATAAAGGGAAAGAAAGCTGAGGACAAATTATTCGATTTAAAATATGATACTTTAT
ATAGAAAATTAAAGAGATTAGGTAAGAAAGTTGGAATTGATTTAAGACCACATATTTTGAGACACACTTTCGCTACCTTA
TCACTAAAAAGAGGAATTAATGTAATTACATTACAGAAATTACTAGGACATAAGGATATAAAAACAACTCAAATCTACAC
ACATTTAGTCCTAGACGATTTAAGGAATGAATACCTTAAGGCAATGTCAAGCTCTTCCAGTAAAACGCCACCTTAA

Upstream 100 bases:

>100_bases
AAGGAAATCAGAAGCAATGATACCATAATAAGCTAAGTAAGTAATACCCTAATTATTAAGAGTTTATCCTTTTGAGACTT
AATCCTACTACATATAATAT

Downstream 100 bases:

>100_bases
CATTTCACTAACATATGATGCTAGATCTCTAATATTATTGAACGAAGCAGTTTGCAAATGTAAGTATTCAAATTTAGCTT
GATTTTCTAGCATTTTCTGC

Product: XerC/D integrase-recombinase protein (xerC/D)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 291; Mature: 291

Protein sequence:

>291_residues
MKLDLGSPPESGDLYNAFINALIIAGAGNGTIKLYSTAVRDFLDFINKDPRKVTSEDLNRWISSLLNREGKVKGDEVEKK
RAKSVTIRYYIIAVRRFLKWINVSVRPPIPKVRRKEVKALDEIQIQKVLNACKRTKDKLIIRLLLDTGLRANELLSVLVK
DIDLENNMIRVRNTKNGEERIVFFTDETKLLLRKYIKGKKAEDKLFDLKYDTLYRKLKRLGKKVGIDLRPHILRHTFATL
SLKRGINVITLQKLLGHKDIKTTQIYTHLVLDDLRNEYLKAMSSSSSKTPP

Sequences:

>Translated_291_residues
MKLDLGSPPESGDLYNAFINALIIAGAGNGTIKLYSTAVRDFLDFINKDPRKVTSEDLNRWISSLLNREGKVKGDEVEKK
RAKSVTIRYYIIAVRRFLKWINVSVRPPIPKVRRKEVKALDEIQIQKVLNACKRTKDKLIIRLLLDTGLRANELLSVLVK
DIDLENNMIRVRNTKNGEERIVFFTDETKLLLRKYIKGKKAEDKLFDLKYDTLYRKLKRLGKKVGIDLRPHILRHTFATL
SLKRGINVITLQKLLGHKDIKTTQIYTHLVLDDLRNEYLKAMSSSSSKTPP
>Mature_291_residues
MKLDLGSPPESGDLYNAFINALIIAGAGNGTIKLYSTAVRDFLDFINKDPRKVTSEDLNRWISSLLNREGKVKGDEVEKK
RAKSVTIRYYIIAVRRFLKWINVSVRPPIPKVRRKEVKALDEIQIQKVLNACKRTKDKLIIRLLLDTGLRANELLSVLVK
DIDLENNMIRVRNTKNGEERIVFFTDETKLLLRKYIKGKKAEDKLFDLKYDTLYRKLKRLGKKVGIDLRPHILRHTFATL
SLKRGINVITLQKLLGHKDIKTTQIYTHLVLDDLRNEYLKAMSSSSSKTPP

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules [H]

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1789261, Length=213, Percent_Identity=31.924882629108, Blast_Score=98, Evalue=8e-22,
Organism=Escherichia coli, GI1790244, Length=222, Percent_Identity=28.3783783783784, Blast_Score=73, Evalue=2e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109
- InterPro:   IPR004107 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 33540; Mature: 33540

Theoretical pI: Translated: 10.72; Mature: 10.72

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLDLGSPPESGDLYNAFINALIIAGAGNGTIKLYSTAVRDFLDFINKDPRKVTSEDLNR
CCCCCCCCCCCCHHHHHHHHHEEEEECCCCEEEHHHHHHHHHHHHHCCCCCHHHHHHHHH
WISSLLNREGKVKGDEVEKKRAKSVTIRYYIIAVRRFLKWINVSVRPPIPKVRRKEVKAL
HHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH
DEIQIQKVLNACKRTKDKLIIRLLLDTGLRANELLSVLVKDIDLENNMIRVRNTKNGEER
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCE
IVFFTDETKLLLRKYIKGKKAEDKLFDLKYDTLYRKLKRLGKKVGIDLRPHILRHTFATL
EEEEECCHHHHHHHHHCCCCCCHHHHHCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
SLKRGINVITLQKLLGHKDIKTTQIYTHLVLDDLRNEYLKAMSSSSSKTPP
HHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MKLDLGSPPESGDLYNAFINALIIAGAGNGTIKLYSTAVRDFLDFINKDPRKVTSEDLNR
CCCCCCCCCCCCHHHHHHHHHEEEEECCCCEEEHHHHHHHHHHHHHCCCCCHHHHHHHHH
WISSLLNREGKVKGDEVEKKRAKSVTIRYYIIAVRRFLKWINVSVRPPIPKVRRKEVKAL
HHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH
DEIQIQKVLNACKRTKDKLIIRLLLDTGLRANELLSVLVKDIDLENNMIRVRNTKNGEER
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCE
IVFFTDETKLLLRKYIKGKKAEDKLFDLKYDTLYRKLKRLGKKVGIDLRPHILRHTFATL
EEEEECCHHHHHHHHHCCCCCCHHHHHCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
SLKRGINVITLQKLLGHKDIKTTQIYTHLVLDDLRNEYLKAMSSSSSKTPP
HHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9371463 [H]