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The map label for this gene is pdcd5

Identifier: 15897289

GI number: 15897289

Start: 300674

End: 301030

Strand: Reverse

Name: pdcd5

Synonym: SSO0352

Alternate gene names: NA

Gene position: 301030-300674 (Counterclockwise)

Preceding gene: 161777479

Following gene: 15897288

Centisome position: 10.06

GC content: 33.05

Gene sequence:

>357_bases
ATGTCAACTCCAAACTCATATGATGATGAAGAATTAGAAGAATTATTAAGAAGAAAAGCTGCACAAGAGCAAAAAAGAAT
AGAAGAAGAGAGAAAGAGAAAAGCAGAATTAGAATCCCAAAAAGAGTCAATCTTAAGAGTAATATTAACACCTGAGGCAC
GACAGAGGCTAACAAATATAAAATTAGTTAAGCCTGAATTTGCCGAATCGCTGGAAAATCAATTAATTGCACTAGCACAA
TCTGGAAGAATAAAGATACCAATAACAGATGAGGAATTAAAGCAAATATTGGAACAGATTTCACAACAGAACAGACGTGA
TTTCAAAATACAAATAAGAGAGAGAGGATGGAAATGA

Upstream 100 bases:

>100_bases
AAGGAAGGTCATTATTAGATAAATTAGCGTTGGAAATCTTTAAAGAGCTGGCTGAGAATAATACTTCTTTGAAGGTATAC
TTGGAATAAGGGGTGAAAAG

Downstream 100 bases:

>100_bases
GTAGAAATAAACCAGTAGCTAAGAAATTTAGATTAGCCAAAGCCTTAAAAGCGAACTCTCCAATACCAATATGGATAGTT
CTAAAGACTCGTGGAAGAGT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 118; Mature: 117

Protein sequence:

>118_residues
MSTPNSYDDEELEELLRRKAAQEQKRIEEERKRKAELESQKESILRVILTPEARQRLTNIKLVKPEFAESLENQLIALAQ
SGRIKIPITDEELKQILEQISQQNRRDFKIQIRERGWK

Sequences:

>Translated_118_residues
MSTPNSYDDEELEELLRRKAAQEQKRIEEERKRKAELESQKESILRVILTPEARQRLTNIKLVKPEFAESLENQLIALAQ
SGRIKIPITDEELKQILEQISQQNRRDFKIQIRERGWK
>Mature_117_residues
STPNSYDDEELEELLRRKAAQEQKRIEEERKRKAELESQKESILRVILTPEARQRLTNIKLVKPEFAESLENQLIALAQS
GRIKIPITDEELKQILEQISQQNRRDFKIQIRERGWK

Specific function: Unknown

COG id: COG2118

COG function: function code R; DNA-binding protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the PDCD5 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022889
- InterPro:   IPR002836 [H]

Pfam domain/function: PF01984 dsDNA_bind [H]

EC number: NA

Molecular weight: Translated: 14054; Mature: 13923

Theoretical pI: Translated: 9.03; Mature: 9.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
0.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTPNSYDDEELEELLRRKAAQEQKRIEEERKRKAELESQKESILRVILTPEARQRLTNI
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHC
KLVKPEFAESLENQLIALAQSGRIKIPITDEELKQILEQISQQNRRDFKIQIRERGWK
CCCCHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHCCCCCEEEECCCCCCC
>Mature Secondary Structure 
STPNSYDDEELEELLRRKAAQEQKRIEEERKRKAELESQKESILRVILTPEARQRLTNI
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHC
KLVKPEFAESLENQLIALAQSGRIKIPITDEELKQILEQISQQNRRDFKIQIRERGWK
CCCCHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHCCCCCEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA