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The map label for this gene is 15897254

Identifier: 15897254

GI number: 15897254

Start: 265543

End: 267195

Strand: Direct

Name: 15897254

Synonym: SSO0313

Alternate gene names: NA

Gene position: 265543-267195 (Clockwise)

Preceding gene: 15897252

Following gene: 15897255

Centisome position: 8.87

GC content: 31.46

Gene sequence:

>1653_bases
GTGGAACTTAGAGAGTGGCAAAGCAAAATAGCTGAGAAAATTGTAGAAGCATTAAGAAATAATTTTTTAGTTTCATTGCA
AGCTCCTACGGGTAGTGGTAAGACTTTATTTGCACTTTACACTGCTCTTAAGGTTAAGCCAAAAGTAGCGTTTGTTGTAA
GAACTCATAACGAATTTTTCCCAGTTTACAGAGAACTATCTTTACACTTTAAGGATAAAAAATACGGATTTTTAGTAGGT
AAATCCTCTGCGTGTGTTTTTAGTTCATCTGACGTTGATGCTCAAGATATATATTGTAATGGATGTGAAATTTTTAACGC
GTCCGCAGTTACCGTAACTGATTCGCCAAAGGTAAGTCTGAATAAGCTAAAGGAGGAGGGTAAAAAATTAGGATTTTGCC
CTTATTATTCTCTTCTGGAGACCATAAAAACCGCTGATGTGATATTACTCACATATCCTTATCTGTTTATACCTTGGCTT
AGAGAATCTTTAGATATTAATTGGGAGGACTATGTTGTTATAGTAGACGAGGCTCATAATATAGAGAACGTTTCTAATAT
AGAAGAGAAAAAACTAAACAAAAGAATTATAGAGATGGCAATTTCCCAATCTCACTCACAAAATGTGAAAGTAATATTGG
AAAGACTTAAGGAAAATGTTGAAAAGGCAGTTTATTCAGAGGATAAATATATACTTATTGAAAAGGATAAATTAGACAAT
ATACTACCTTCTAATGAAGAAATCGAGATTTTATCGGAAGAATATGATGAAATTAGGAAGATTATGATAAAAAATAAGAC
GGTAAGTAGGAATTATCTCGGATCGATTTTGAGGTTTTTTGATTTAGTTAATGATGAAGGAATTAGAGTTTTTTCATATT
CTGGTTCCTTGATTGCAAAATATATAATACCCTCTTACTTTACTGATATACTTAACGATGAGAAAATTACGTATATGCTG
ATGTCCGGTACTATGCAACCCTTAGATTATCTTAGAAATATTATAGGAATTAAAAGGAAAATATTATATATTGATGCAGA
AAAGGTTATGAAAAAAAGATTAACTGGGACATATGAGTGTCTTATATCTATTGATGTTACAACTACTTATAGTTTAAGAT
CGGAACAAATGGCACGTAAATATGCATCATATTTACTAAAAATTTTCTATAATTCTAGAAGACATGTTCTAGCTATATTT
CCTAGCTATGAATTTATGAGAATAGTATCTAAATTTCTAAATATAAGATATTTGGCAGAAGATACAGAAACTAGTATCGA
AGAGATAATGAGCAATCTGAAAAAAGAAAAAACAATTATCATGGGTATAGCAAGGGGTAAGTTAGCTGAAGGAATTGAAA
TAGTTGAAAATGGATCTAGTCTAATATCAGATGTGGCAATGGTAGGTATCCCTTATCCTCCAATAGATGATTACTTAAAG
ATACGAGTTGAGGAGATATCAAAAATCTTGAAAAAGGATATTAGTAACGAATTAATCAGTATACAAGCATTAATTGCTGT
AAAACAATCCATAGGTAGGGCCATAAGGGGTCCAACGGATAATGCAACTATATGGCTTCTTGATAAAAGATATGATAGTC
TATGGTGGAAGAAAGAACTTAATTGCTTGAATGCAAGGAAAATTAAACTGTGA

Upstream 100 bases:

>100_bases
AGAGGAAAAGCAAAGACTATTGCATCCTTACTAGATAAATCCTTTGTGAAGTATATAATGCTAGAAGAAGTTATAGTAAA
CACTCCACAATTAATCTAAT

Downstream 100 bases:

>100_bases
AATAGAAATGGAAGTGCAGATTTTTACTCATAAAAACTGTGTAGAATGTAACATGCTTCTTGAGTATCTAGAGAATAAAG
GACTATTGGGTAAAGTAAAA

Product: DNA helicase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 550; Mature: 550

Protein sequence:

>550_residues
MELREWQSKIAEKIVEALRNNFLVSLQAPTGSGKTLFALYTALKVKPKVAFVVRTHNEFFPVYRELSLHFKDKKYGFLVG
KSSACVFSSSDVDAQDIYCNGCEIFNASAVTVTDSPKVSLNKLKEEGKKLGFCPYYSLLETIKTADVILLTYPYLFIPWL
RESLDINWEDYVVIVDEAHNIENVSNIEEKKLNKRIIEMAISQSHSQNVKVILERLKENVEKAVYSEDKYILIEKDKLDN
ILPSNEEIEILSEEYDEIRKIMIKNKTVSRNYLGSILRFFDLVNDEGIRVFSYSGSLIAKYIIPSYFTDILNDEKITYML
MSGTMQPLDYLRNIIGIKRKILYIDAEKVMKKRLTGTYECLISIDVTTTYSLRSEQMARKYASYLLKIFYNSRRHVLAIF
PSYEFMRIVSKFLNIRYLAEDTETSIEEIMSNLKKEKTIIMGIARGKLAEGIEIVENGSSLISDVAMVGIPYPPIDDYLK
IRVEEISKILKKDISNELISIQALIAVKQSIGRAIRGPTDNATIWLLDKRYDSLWWKKELNCLNARKIKL

Sequences:

>Translated_550_residues
MELREWQSKIAEKIVEALRNNFLVSLQAPTGSGKTLFALYTALKVKPKVAFVVRTHNEFFPVYRELSLHFKDKKYGFLVG
KSSACVFSSSDVDAQDIYCNGCEIFNASAVTVTDSPKVSLNKLKEEGKKLGFCPYYSLLETIKTADVILLTYPYLFIPWL
RESLDINWEDYVVIVDEAHNIENVSNIEEKKLNKRIIEMAISQSHSQNVKVILERLKENVEKAVYSEDKYILIEKDKLDN
ILPSNEEIEILSEEYDEIRKIMIKNKTVSRNYLGSILRFFDLVNDEGIRVFSYSGSLIAKYIIPSYFTDILNDEKITYML
MSGTMQPLDYLRNIIGIKRKILYIDAEKVMKKRLTGTYECLISIDVTTTYSLRSEQMARKYASYLLKIFYNSRRHVLAIF
PSYEFMRIVSKFLNIRYLAEDTETSIEEIMSNLKKEKTIIMGIARGKLAEGIEIVENGSSLISDVAMVGIPYPPIDDYLK
IRVEEISKILKKDISNELISIQALIAVKQSIGRAIRGPTDNATIWLLDKRYDSLWWKKELNCLNARKIKL
>Mature_550_residues
MELREWQSKIAEKIVEALRNNFLVSLQAPTGSGKTLFALYTALKVKPKVAFVVRTHNEFFPVYRELSLHFKDKKYGFLVG
KSSACVFSSSDVDAQDIYCNGCEIFNASAVTVTDSPKVSLNKLKEEGKKLGFCPYYSLLETIKTADVILLTYPYLFIPWL
RESLDINWEDYVVIVDEAHNIENVSNIEEKKLNKRIIEMAISQSHSQNVKVILERLKENVEKAVYSEDKYILIEKDKLDN
ILPSNEEIEILSEEYDEIRKIMIKNKTVSRNYLGSILRFFDLVNDEGIRVFSYSGSLIAKYIIPSYFTDILNDEKITYML
MSGTMQPLDYLRNIIGIKRKILYIDAEKVMKKRLTGTYECLISIDVTTTYSLRSEQMARKYASYLLKIFYNSRRHVLAIF
PSYEFMRIVSKFLNIRYLAEDTETSIEEIMSNLKKEKTIIMGIARGKLAEGIEIVENGSSLISDVAMVGIPYPPIDDYLK
IRVEEISKILKKDISNELISIQALIAVKQSIGRAIRGPTDNATIWLLDKRYDSLWWKKELNCLNARKIKL

Specific function: Unknown

COG id: COG1199

COG function: function code KL; Rad3-related DNA helicases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 helicase ATP-binding domain [H]

Homologues:

Organism=Homo sapiens, GI301897118, Length=59, Percent_Identity=52.5423728813559, Blast_Score=69, Evalue=8e-12,
Organism=Saccharomyces cerevisiae, GI6325249, Length=290, Percent_Identity=26.2068965517241, Blast_Score=71, Evalue=4e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010614
- InterPro:   IPR014013
- InterPro:   IPR006555 [H]

Pfam domain/function: PF06733 DEAD_2 [H]

EC number: =3.6.4.12 [H]

Molecular weight: Translated: 63448; Mature: 63448

Theoretical pI: Translated: 8.44; Mature: 8.44

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MELREWQSKIAEKIVEALRNNFLVSLQAPTGSGKTLFALYTALKVKPKVAFVVRTHNEFF
CCHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCHHHHHHHHCCCCEEEEEEEECCCHH
PVYRELSLHFKDKKYGFLVGKSSACVFSSSDVDAQDIYCNGCEIFNASAVTVTDSPKVSL
HHHHHHHEEECCCCEEEEEECCCEEEEECCCCCCCCEEECCEEEECCEEEEEECCCCHHH
NKLKEEGKKLGFCPYYSLLETIKTADVILLTYPYLFIPWLRESLDINWEDYVVIVDEAHN
HHHHHCCCCCCCCHHHHHHHHHHHCCEEEEHHHHHHHHHHHHHCCCCCCCEEEEEECCCC
IENVSNIEEKKLNKRIIEMAISQSHSQNVKVILERLKENVEKAVYSEDKYILIEKDKLDN
CCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCC
ILPSNEEIEILSEEYDEIRKIMIKNKTVSRNYLGSILRFFDLVNDEGIRVFSYSGSLIAK
CCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHH
YIIPSYFTDILNDEKITYMLMSGTMQPLDYLRNIIGIKRKILYIDAEKVMKKRLTGTYEC
HHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHCCCEEEEEEHHHHHHHHCCCEEEE
LISIDVTTTYSLRSEQMARKYASYLLKIFYNSRRHVLAIFPSYEFMRIVSKFLNIRYLAE
EEEEEEEEEEHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHCEEEEEC
DTETSIEEIMSNLKKEKTIIMGIARGKLAEGIEIVENGSSLISDVAMVGIPYPPIDDYLK
CHHHHHHHHHHHHHHCCEEEEEECCCCHHCCHHHHHCCHHHHHHHHHHCCCCCCCCHHHH
IRVEEISKILKKDISNELISIQALIAVKQSIGRAIRGPTDNATIWLLDKRYDSLWWKKEL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCHHHHHHHHHC
NCLNARKIKL
CCCCCCEECC
>Mature Secondary Structure
MELREWQSKIAEKIVEALRNNFLVSLQAPTGSGKTLFALYTALKVKPKVAFVVRTHNEFF
CCHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCHHHHHHHHCCCCEEEEEEEECCCHH
PVYRELSLHFKDKKYGFLVGKSSACVFSSSDVDAQDIYCNGCEIFNASAVTVTDSPKVSL
HHHHHHHEEECCCCEEEEEECCCEEEEECCCCCCCCEEECCEEEECCEEEEEECCCCHHH
NKLKEEGKKLGFCPYYSLLETIKTADVILLTYPYLFIPWLRESLDINWEDYVVIVDEAHN
HHHHHCCCCCCCCHHHHHHHHHHHCCEEEEHHHHHHHHHHHHHCCCCCCCEEEEEECCCC
IENVSNIEEKKLNKRIIEMAISQSHSQNVKVILERLKENVEKAVYSEDKYILIEKDKLDN
CCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCC
ILPSNEEIEILSEEYDEIRKIMIKNKTVSRNYLGSILRFFDLVNDEGIRVFSYSGSLIAK
CCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHH
YIIPSYFTDILNDEKITYMLMSGTMQPLDYLRNIIGIKRKILYIDAEKVMKKRLTGTYEC
HHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHCCCEEEEEEHHHHHHHHCCCEEEE
LISIDVTTTYSLRSEQMARKYASYLLKIFYNSRRHVLAIFPSYEFMRIVSKFLNIRYLAE
EEEEEEEEEEHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHCEEEEEC
DTETSIEEIMSNLKKEKTIIMGIARGKLAEGIEIVENGSSLISDVAMVGIPYPPIDDYLK
CHHHHHHHHHHHHHHCCEEEEEECCCCHHCCHHHHHCCHHHHHHHHHHCCCCCCCCHHHH
IRVEEISKILKKDISNELISIQALIAVKQSIGRAIRGPTDNATIWLLDKRYDSLWWKKEL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCHHHHHHHHHC
NCLNARKIKL
CCCCCCEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA