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The map label for this gene is 15897224

Identifier: 15897224

GI number: 15897224

Start: 238786

End: 239298

Strand: Direct

Name: 15897224

Synonym: SSO0280

Alternate gene names: NA

Gene position: 238786-239298 (Clockwise)

Preceding gene: 15897220

Following gene: 15897225

Centisome position: 7.98

GC content: 28.46

Gene sequence:

>513_bases
ATGCAATGCCCTGCATGTGGTTCGAATGAAATAATTTGGGATAATAAGAACGGAGAAATAGTGTGTAGTAATTGTGGTAC
AATTATCGACAATATTTACTATAATGGGCAAAATGAATCAGAGAGTACGGAGATAATCTCAATAAATAATAAGTTTTACA
AGGATGATATACAAGTTAAAGAACTGCGAGTTAAAAATTTCTTAAAGAATAATCGAATAGAAACTAAAAAAATAGATCAG
TATGAAATTATCTTAAGATCTATGTTGCTCGATAGTCAATATAAGAAAATATACAAGCTACTGTATGATGAGGGTATTTT
AAGTGGTTTAAAAGCTAAAAGTAAACTGGGTCTTCTAATCTATTTTAGATTCGCGTTAAATAATGGATATTTACATCTAT
TAGAAAAATTCGACATAAAAAATGAAACCCTTAAAAAAATACTCAAAAGAATTGGTAGAAAACGCTTAACATTACTTTTC
GATAAACTTAACGAAGAAAGCGATCGTATTTGA

Upstream 100 bases:

>100_bases
AGGCTGTGTATATCTTGTCTAAAGTAGTTTCACTTTTCTCAGACATTATAGTCACATTATCAAAAATAAGTATATTCCCC
ATAAAAGTTATTGTTTTCAT

Downstream 100 bases:

>100_bases
TTTGAGTAAAATTTTTATATAACCTTTTTTTAAGACAGAGTGGAAGGTGCGTAAAATGGCAACAGCTACAGTTGCAACTA
CACCCGAAGGTATACCTGTA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 170; Mature: 170

Protein sequence:

>170_residues
MQCPACGSNEIIWDNKNGEIVCSNCGTIIDNIYYNGQNESESTEIISINNKFYKDDIQVKELRVKNFLKNNRIETKKIDQ
YEIILRSMLLDSQYKKIYKLLYDEGILSGLKAKSKLGLLIYFRFALNNGYLHLLEKFDIKNETLKKILKRIGRKRLTLLF
DKLNEESDRI

Sequences:

>Translated_170_residues
MQCPACGSNEIIWDNKNGEIVCSNCGTIIDNIYYNGQNESESTEIISINNKFYKDDIQVKELRVKNFLKNNRIETKKIDQ
YEIILRSMLLDSQYKKIYKLLYDEGILSGLKAKSKLGLLIYFRFALNNGYLHLLEKFDIKNETLKKILKRIGRKRLTLLF
DKLNEESDRI
>Mature_170_residues
MQCPACGSNEIIWDNKNGEIVCSNCGTIIDNIYYNGQNESESTEIISINNKFYKDDIQVKELRVKNFLKNNRIETKKIDQ
YEIILRSMLLDSQYKKIYKLLYDEGILSGLKAKSKLGLLIYFRFALNNGYLHLLEKFDIKNETLKKILKRIGRKRLTLLF
DKLNEESDRI

Specific function: Unknown

COG id: COG1405

COG function: function code K; Transcription initiation factor TFIIIB, Brf1 subunit/Transcription initiation factor TFIIB

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 TFIIB-type zinc finger [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000812
- InterPro:   IPR013137 [H]

Pfam domain/function: PF08271 TFIIB_Zn_Ribbon [H]

EC number: NA

Molecular weight: Translated: 19968; Mature: 19968

Theoretical pI: Translated: 9.27; Mature: 9.27

Prosite motif: PS51134 ZF_TFIIB

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQCPACGSNEIIWDNKNGEIVCSNCGTIIDNIYYNGQNESESTEIISINNKFYKDDIQVK
CCCCCCCCCCEEEECCCCCEEECCCCHHHHHHEECCCCCCCCCEEEEECCCEECCCCHHH
ELRVKNFLKNNRIETKKIDQYEIILRSMLLDSQYKKIYKLLYDEGILSGLKAKSKLGLLI
HHHHHHHHHCCCCCCHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEE
YFRFALNNGYLHLLEKFDIKNETLKKILKRIGRKRLTLLFDKLNEESDRI
EEEEHHCCCCEEHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MQCPACGSNEIIWDNKNGEIVCSNCGTIIDNIYYNGQNESESTEIISINNKFYKDDIQVK
CCCCCCCCCCEEEECCCCCEEECCCCHHHHHHEECCCCCCCCCEEEEECCCEECCCCHHH
ELRVKNFLKNNRIETKKIDQYEIILRSMLLDSQYKKIYKLLYDEGILSGLKAKSKLGLLI
HHHHHHHHHCCCCCCHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEE
YFRFALNNGYLHLLEKFDIKNETLKKILKRIGRKRLTLLFDKLNEESDRI
EEEEHHCCCCEEHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA