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The map label for this gene is yebU [C]

Identifier: 15897196

GI number: 15897196

Start: 217690

End: 218709

Strand: Reverse

Name: yebU [C]

Synonym: SSO0252

Alternate gene names: 15897196

Gene position: 218709-217690 (Counterclockwise)

Preceding gene: 15897200

Following gene: 15897195

Centisome position: 7.31

GC content: 34.22

Gene sequence:

>1020_bases
ATGGAAAATCGCATAGCGAAGTATTTAAGTGCACATTACAATTTGTTTCAAATTTCTCCTAGCTATAAGGCTAAAAGGTT
AGCATCTAAGTACAGATTTTTAGATTATATGATTGAGCGATATTTGAATATGTTTAGTACTGAAGAAGAATTAGAAGAAT
ATTTAAATTCTTGTAGCTTTCCATTAAAAAAGAGCATTAGATGTAATACACTGAAAACTGATTGCAAAAAATTAGAAGAG
ATAATGTTAGAGAAAGGATTTGTTTTGGAAAAAGTTAAGTGGTTGCAGCATGGCTATGTAGTTAAAAGAACTCCACCTAA
GCCATCTTTAGGTTCTACACTCGAGTATCTAATGGGATATTATCATATCCAAGGTCTAGCCTCTATGGTACCTGCATACG
TTCTAAATCCTTCATATGATGATTTTGTTTTGGATATGGCTGCAGCACCAGGCGGAAAAACTACACAATTATCTCAAATT
ATGCAGAATAAAGGTTTGGTGATAGCAGTTGAGAAGAAGCGTAGTAGGATAAGAGCTCTTCTCAGTAACGTTAATAGGCT
AGGTGCTGAAAACGTGGTGCTAATTAAAACTGATGCCTTAAATTTAATAAATATAAACAAATCTCAATTTGATAAAATAT
TATTAGATGCGCCTTGTAGTGGTGAAGGATTAATACAGAAGGACCCTACTAGACGATATAAAACCACAATGGACGACTTA
AGGGATTTTGCGCACTTGCAGTTATCTCTAATTGAGATCGCATATGAACTCTTGAAAAAGGGAGGTTATATTGTTTATTC
CACATGTAGTGTAGCACCAGAAGAGGACGAATTAATTGTTAATTTCGCTATCGAAGAATTAGGTATGAAGGCAATGAGTG
TAGAAGGATATCCTGCCTCTAACGGATATATAGAGTATTATACTACTAGATTTAGTAACGATGTGAAGAATTGTTTAAGA
TTTTTCCCACATAAGCAAGGCACGGAGGGGTTTTTCTTATGCCTTTTAAAGAAGGAATAA

Upstream 100 bases:

>100_bases
CATCTAATAATTTCATATCCTTTCCTAATGATTCTCTTAACTCCTCTAATGATGGATACTCAACTACTATTTTAACCTCT
TTTTCGATCATTATTCTCTG

Downstream 100 bases:

>100_bases
GGATGAGTTTTAGTGAGGCTAGGATAGACGAAGTTAGATCTAAACTTGAGGTTATTTTCTCAAGATATAATTGTATGAAT
AAATTGAGTGAATTTATATG

Product: proliferating cell nuclear antigen

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 339; Mature: 339

Protein sequence:

>339_residues
MENRIAKYLSAHYNLFQISPSYKAKRLASKYRFLDYMIERYLNMFSTEEELEEYLNSCSFPLKKSIRCNTLKTDCKKLEE
IMLEKGFVLEKVKWLQHGYVVKRTPPKPSLGSTLEYLMGYYHIQGLASMVPAYVLNPSYDDFVLDMAAAPGGKTTQLSQI
MQNKGLVIAVEKKRSRIRALLSNVNRLGAENVVLIKTDALNLININKSQFDKILLDAPCSGEGLIQKDPTRRYKTTMDDL
RDFAHLQLSLIEIAYELLKKGGYIVYSTCSVAPEEDELIVNFAIEELGMKAMSVEGYPASNGYIEYYTTRFSNDVKNCLR
FFPHKQGTEGFFLCLLKKE

Sequences:

>Translated_339_residues
MENRIAKYLSAHYNLFQISPSYKAKRLASKYRFLDYMIERYLNMFSTEEELEEYLNSCSFPLKKSIRCNTLKTDCKKLEE
IMLEKGFVLEKVKWLQHGYVVKRTPPKPSLGSTLEYLMGYYHIQGLASMVPAYVLNPSYDDFVLDMAAAPGGKTTQLSQI
MQNKGLVIAVEKKRSRIRALLSNVNRLGAENVVLIKTDALNLININKSQFDKILLDAPCSGEGLIQKDPTRRYKTTMDDL
RDFAHLQLSLIEIAYELLKKGGYIVYSTCSVAPEEDELIVNFAIEELGMKAMSVEGYPASNGYIEYYTTRFSNDVKNCLR
FFPHKQGTEGFFLCLLKKE
>Mature_339_residues
MENRIAKYLSAHYNLFQISPSYKAKRLASKYRFLDYMIERYLNMFSTEEELEEYLNSCSFPLKKSIRCNTLKTDCKKLEE
IMLEKGFVLEKVKWLQHGYVVKRTPPKPSLGSTLEYLMGYYHIQGLASMVPAYVLNPSYDDFVLDMAAAPGGKTTQLSQI
MQNKGLVIAVEKKRSRIRALLSNVNRLGAENVVLIKTDALNLININKSQFDKILLDAPCSGEGLIQKDPTRRYKTTMDDL
RDFAHLQLSLIEIAYELLKKGGYIVYSTCSVAPEEDELIVNFAIEELGMKAMSVEGYPASNGYIEYYTTRFSNDVKNCLR
FFPHKQGTEGFFLCLLKKE

Specific function: May act as RNA methyltransferase [H]

COG id: COG0144

COG function: function code J; tRNA and rRNA cytosine-C5-methylases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the methyltransferase superfamily. RsmB/NOP family [H]

Homologues:

Organism=Homo sapiens, GI76150625, Length=321, Percent_Identity=34.2679127725857, Blast_Score=205, Evalue=6e-53,
Organism=Homo sapiens, GI76150623, Length=321, Percent_Identity=34.2679127725857, Blast_Score=205, Evalue=6e-53,
Organism=Homo sapiens, GI32698918, Length=202, Percent_Identity=32.1782178217822, Blast_Score=101, Evalue=1e-21,
Organism=Homo sapiens, GI301336155, Length=278, Percent_Identity=29.136690647482, Blast_Score=100, Evalue=2e-21,
Organism=Homo sapiens, GI39995082, Length=278, Percent_Identity=29.136690647482, Blast_Score=100, Evalue=2e-21,
Organism=Homo sapiens, GI270288818, Length=304, Percent_Identity=24.3421052631579, Blast_Score=85, Evalue=7e-17,
Organism=Homo sapiens, GI8922322, Length=304, Percent_Identity=24.3421052631579, Blast_Score=85, Evalue=9e-17,
Organism=Homo sapiens, GI270288816, Length=304, Percent_Identity=24.3421052631579, Blast_Score=85, Evalue=1e-16,
Organism=Homo sapiens, GI23199998, Length=304, Percent_Identity=24.3421052631579, Blast_Score=85, Evalue=1e-16,
Organism=Homo sapiens, GI11545785, Length=204, Percent_Identity=29.4117647058824, Blast_Score=75, Evalue=7e-14,
Organism=Homo sapiens, GI40316918, Length=199, Percent_Identity=28.1407035175879, Blast_Score=69, Evalue=6e-12,
Organism=Escherichia coli, GI87081985, Length=316, Percent_Identity=32.9113924050633, Blast_Score=175, Evalue=4e-45,
Organism=Escherichia coli, GI2367212, Length=184, Percent_Identity=31.5217391304348, Blast_Score=105, Evalue=4e-24,
Organism=Caenorhabditis elegans, GI17536757, Length=323, Percent_Identity=35.6037151702786, Blast_Score=202, Evalue=2e-52,
Organism=Caenorhabditis elegans, GI25143471, Length=177, Percent_Identity=35.5932203389831, Blast_Score=102, Evalue=2e-22,
Organism=Caenorhabditis elegans, GI115534021, Length=245, Percent_Identity=28.5714285714286, Blast_Score=88, Evalue=6e-18,
Organism=Caenorhabditis elegans, GI71998419, Length=245, Percent_Identity=28.5714285714286, Blast_Score=88, Evalue=7e-18,
Organism=Caenorhabditis elegans, GI17509941, Length=165, Percent_Identity=30.9090909090909, Blast_Score=67, Evalue=1e-11,
Organism=Saccharomyces cerevisiae, GI6324268, Length=317, Percent_Identity=35.3312302839117, Blast_Score=196, Evalue=5e-51,
Organism=Saccharomyces cerevisiae, GI6319447, Length=273, Percent_Identity=28.2051282051282, Blast_Score=110, Evalue=3e-25,
Organism=Saccharomyces cerevisiae, GI6324306, Length=273, Percent_Identity=24.9084249084249, Blast_Score=70, Evalue=5e-13,
Organism=Drosophila melanogaster, GI22024126, Length=315, Percent_Identity=35.2380952380952, Blast_Score=199, Evalue=2e-51,
Organism=Drosophila melanogaster, GI21355201, Length=379, Percent_Identity=25.8575197889182, Blast_Score=100, Evalue=1e-21,
Organism=Drosophila melanogaster, GI24668781, Length=178, Percent_Identity=32.5842696629214, Blast_Score=97, Evalue=2e-20,
Organism=Drosophila melanogaster, GI21356513, Length=178, Percent_Identity=32.5842696629214, Blast_Score=96, Evalue=4e-20,
Organism=Drosophila melanogaster, GI21356579, Length=217, Percent_Identity=30.4147465437788, Blast_Score=87, Evalue=2e-17,
Organism=Drosophila melanogaster, GI19920494, Length=231, Percent_Identity=27.7056277056277, Blast_Score=75, Evalue=8e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001678
- InterPro:   IPR018314
- InterPro:   IPR011023 [H]

Pfam domain/function: PF01189 Nol1_Nop2_Fmu [H]

EC number: NA

Molecular weight: Translated: 38852; Mature: 38852

Theoretical pI: Translated: 8.57; Mature: 8.57

Prosite motif: PS01153 NOL1_NOP2_SUN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MENRIAKYLSAHYNLFQISPSYKAKRLASKYRFLDYMIERYLNMFSTEEELEEYLNSCSF
CCHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCC
PLKKSIRCNTLKTDCKKLEEIMLEKGFVLEKVKWLQHGYVVKRTPPKPSLGSTLEYLMGY
CHHCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHCCEEEEECCCCCCCHHHHHHHHHH
YHIQGLASMVPAYVLNPSYDDFVLDMAAAPGGKTTQLSQIMQNKGLVIAVEKKRSRIRAL
HHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCHHHHHHHHHCCCEEEEEHHHHHHHHHH
LSNVNRLGAENVVLIKTDALNLININKSQFDKILLDAPCSGEGLIQKDPTRRYKTTMDDL
HHHHHHCCCCCEEEEEECCEEEEECCHHHHHHEEEECCCCCCCCCCCCCCHHHHHHHHHH
RDFAHLQLSLIEIAYELLKKGGYIVYSTCSVAPEEDELIVNFAIEELGMKAMSVEGYPAS
HHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEEEHHHHHCCCEEEECCCCCC
NGYIEYYTTRFSNDVKNCLRFFPHKQGTEGFFLCLLKKE
CCEEEEEEHHHHHHHHHHHHHCCCCCCCCEEEEEEEECC
>Mature Secondary Structure
MENRIAKYLSAHYNLFQISPSYKAKRLASKYRFLDYMIERYLNMFSTEEELEEYLNSCSF
CCHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCC
PLKKSIRCNTLKTDCKKLEEIMLEKGFVLEKVKWLQHGYVVKRTPPKPSLGSTLEYLMGY
CHHCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHCCEEEEECCCCCCCHHHHHHHHHH
YHIQGLASMVPAYVLNPSYDDFVLDMAAAPGGKTTQLSQIMQNKGLVIAVEKKRSRIRAL
HHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCHHHHHHHHHCCCEEEEEHHHHHHHHHH
LSNVNRLGAENVVLIKTDALNLININKSQFDKILLDAPCSGEGLIQKDPTRRYKTTMDDL
HHHHHHCCCCCEEEEEECCEEEEECCHHHHHHEEEECCCCCCCCCCCCCCHHHHHHHHHH
RDFAHLQLSLIEIAYELLKKGGYIVYSTCSVAPEEDELIVNFAIEELGMKAMSVEGYPAS
HHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEEEHHHHHCCCEEEECCCCCC
NGYIEYYTTRFSNDVKNCLRFFPHKQGTEGFFLCLLKKE
CCEEEEEEHHHHHHHHHHHHHCCCCCCCCEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]