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The map label for this gene is nirD [H]

Identifier: 15897190

GI number: 15897190

Start: 212541

End: 213524

Strand: Direct

Name: nirD [H]

Synonym: SSO0245

Alternate gene names: 15897190

Gene position: 212541-213524 (Clockwise)

Preceding gene: 15897189

Following gene: 15897197

Centisome position: 7.1

GC content: 30.08

Gene sequence:

>984_bases
ATGAATTTAGTCGAAATTTCAGATATTGATAAGGAAATATTAATGAAACTAGAGTACGAATTTCCCTTTGATCCTCAACC
TTTTAATATTATTAGCGACGGTTTAAAAATATCTGAGGAGGAATTATTAAATAGAGTTAAAAAATTATTGGAAGATGGTA
TAATCAAAAGAATAGGTATGTATGTTAGTTTTAGAGCAAAAGGAATGGATGGGGCGTTAATTGCAGCACGTATACCTCAA
GATAAAATAGAAAAGTTTAGAAAGATTGCACTAGGAATCAGAGAATTAACTCACAATTATGTTAGAGATCATCCAAAGTT
TAACATATGGTTTGTTTTAAAGGCAAATGATAGAGATACATTAAACGAGAATGTTAAAGAATTACTTAGTCATGTAGAGA
GTAATGATTATGTTATATTATATTCTAAAAAAACATTGAAATTAAGCGTAAAATACGATGTTATAAGAGGTGTATCATGG
AGTCCTAATAATACCATAAGGAGTCTTAGTAAAGTTCCTACTGCTGAAGAATTAGGGATAAACAAACAACTACTAACCGA
GTTATCTTATCCACTAAAAATCTCACAAAGACCATTTAAAGAAATAGCGGAAAAATACAAAATGAAAGAAGATGAATTGG
TCGAATTAATTAAGGAATTATATGATAAAAATGTAATTAAAGATTATGGAGCAACGCTTAATGGAGAGAAAATAGGAATA
GTTGAAAACGGCATGGTTCTACTAGATACTAGTAATGTAGAACAAGCTTGTGAAAAACTAGCTTTAAACATTCCAGAAGC
TACGCACGTAGTACTTAGAGAATCTAATGATGAAAACTGGAAATATTTATGCTATAGTATGATACATGCGAGCAAGAAAG
AGACTATAAGAAACGTAGCAAAAGAGATTTCAAAAGAAACAAATTCAAGAAGTTACATGATACTATTTAGCCTAGAGAAT
CTAAAACCCGGGATCGTTATTTAG

Upstream 100 bases:

>100_bases
GGGGGATAAATGTCGCTGCGGCAACTGGAATACTAGCTGCTAGAGGTATCGCTATAAAACTAGGGTTAGATTAATATATC
ACGTTATCACTTTTTAAATT

Downstream 100 bases:

>100_bases
CTTAGAGAAAGATCCTTTTATTTTTAATACAGATGTGGATTTAACTAGCTTTTCAATAAACTCACGATTTGAGATACCGC
CTTCATACTCTAAATAAAAA

Product: Heme biosynthesis nirD related protein (nirD)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 327; Mature: 327

Protein sequence:

>327_residues
MNLVEISDIDKEILMKLEYEFPFDPQPFNIISDGLKISEEELLNRVKKLLEDGIIKRIGMYVSFRAKGMDGALIAARIPQ
DKIEKFRKIALGIRELTHNYVRDHPKFNIWFVLKANDRDTLNENVKELLSHVESNDYVILYSKKTLKLSVKYDVIRGVSW
SPNNTIRSLSKVPTAEELGINKQLLTELSYPLKISQRPFKEIAEKYKMKEDELVELIKELYDKNVIKDYGATLNGEKIGI
VENGMVLLDTSNVEQACEKLALNIPEATHVVLRESNDENWKYLCYSMIHASKKETIRNVAKEISKETNSRSYMILFSLEN
LKPGIVI

Sequences:

>Translated_327_residues
MNLVEISDIDKEILMKLEYEFPFDPQPFNIISDGLKISEEELLNRVKKLLEDGIIKRIGMYVSFRAKGMDGALIAARIPQ
DKIEKFRKIALGIRELTHNYVRDHPKFNIWFVLKANDRDTLNENVKELLSHVESNDYVILYSKKTLKLSVKYDVIRGVSW
SPNNTIRSLSKVPTAEELGINKQLLTELSYPLKISQRPFKEIAEKYKMKEDELVELIKELYDKNVIKDYGATLNGEKIGI
VENGMVLLDTSNVEQACEKLALNIPEATHVVLRESNDENWKYLCYSMIHASKKETIRNVAKEISKETNSRSYMILFSLEN
LKPGIVI
>Mature_327_residues
MNLVEISDIDKEILMKLEYEFPFDPQPFNIISDGLKISEEELLNRVKKLLEDGIIKRIGMYVSFRAKGMDGALIAARIPQ
DKIEKFRKIALGIRELTHNYVRDHPKFNIWFVLKANDRDTLNENVKELLSHVESNDYVILYSKKTLKLSVKYDVIRGVSW
SPNNTIRSLSKVPTAEELGINKQLLTELSYPLKISQRPFKEIAEKYKMKEDELVELIKELYDKNVIKDYGATLNGEKIGI
VENGMVLLDTSNVEQACEKLALNIPEATHVVLRESNDENWKYLCYSMIHASKKETIRNVAKEISKETNSRSYMILFSLEN
LKPGIVI

Specific function: Required for the biosynthesis of heme D1 of nitrite reductase [H]

COG id: COG1522

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011991 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 37728; Mature: 37728

Theoretical pI: Translated: 7.07; Mature: 7.07

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLVEISDIDKEILMKLEYEFPFDPQPFNIISDGLKISEEELLNRVKKLLEDGIIKRIGM
CCCCCCCCCCHHHHHEECCCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH
YVSFRAKGMDGALIAARIPQDKIEKFRKIALGIRELTHNYVRDHPKFNIWFVLKANDRDT
EEEEEECCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCHH
LNENVKELLSHVESNDYVILYSKKTLKLSVKYDVIRGVSWSPNNTIRSLSKVPTAEELGI
HHHHHHHHHHHCCCCCEEEEEECCEEEEEEEEHHHCCCCCCCCHHHHHHHHCCCHHHHCC
NKQLLTELSYPLKISQRPFKEIAEKYKMKEDELVELIKELYDKNVIKDYGATLNGEKIGI
CHHHHHHCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHCCCCCCCEEEE
VENGMVLLDTSNVEQACEKLALNIPEATHVVLRESNDENWKYLCYSMIHASKKETIRNVA
EECCEEEEECCCHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHH
KEISKETNSRSYMILFSLENLKPGIVI
HHHHHHCCCCEEEEEEEECCCCCCCCC
>Mature Secondary Structure
MNLVEISDIDKEILMKLEYEFPFDPQPFNIISDGLKISEEELLNRVKKLLEDGIIKRIGM
CCCCCCCCCCHHHHHEECCCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH
YVSFRAKGMDGALIAARIPQDKIEKFRKIALGIRELTHNYVRDHPKFNIWFVLKANDRDT
EEEEEECCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCHH
LNENVKELLSHVESNDYVILYSKKTLKLSVKYDVIRGVSWSPNNTIRSLSKVPTAEELGI
HHHHHHHHHHHCCCCCEEEEEECCEEEEEEEEHHHCCCCCCCCHHHHHHHHCCCHHHHCC
NKQLLTELSYPLKISQRPFKEIAEKYKMKEDELVELIKELYDKNVIKDYGATLNGEKIGI
CHHHHHHCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHCCCCCCCEEEE
VENGMVLLDTSNVEQACEKLALNIPEATHVVLRESNDENWKYLCYSMIHASKKETIRNVA
EECCEEEEECCCHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHH
KEISKETNSRSYMILFSLENLKPGIVI
HHHHHHCCCCEEEEEEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7747927 [H]