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The map label for this gene is rpl40e

Identifier: 15897122

GI number: 15897122

Start: 143195

End: 143365

Strand: Reverse

Name: rpl40e

Synonym: SSO5336

Alternate gene names: 15897122

Gene position: 143365-143195 (Counterclockwise)

Preceding gene: 15897125

Following gene: 15897120

Centisome position: 4.79

GC content: 39.77

Gene sequence:

>171_bases
ATGCCGCTAACCGATCCCGCTAAATTGCAAATAGTGCAGCAAAGGGTATTTTTGAAAAAAGTCTGCAGAAAATGTGGGGC
TCTTAATCCTATAAGAGCAACCAAGTGTAGACGATGCCATAGTACAAACTTAAGATTGAAGAAGAAGGAACTACCAACTA
AGAAAGGCTAA

Upstream 100 bases:

>100_bases
CTAACGCAAACATAATCTAGGGGGATCTTCATCTTCATTCACTCCGTTTACCGCAATACTTATGAATGCGAGATAAAATA
ATTATAGCCGGGATAAATAA

Downstream 100 bases:

>100_bases
ATTTTTTACTTAATCAAATTTTTATTCCAATAGATGATAAACGTTCCTTTATACTTTCACTATTTTCCTCAAATGCTTGA
ATATGTTCTTTTAAATACTC

Product: 50S ribosomal protein L40e

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 56; Mature: 55

Protein sequence:

>56_residues
MPLTDPAKLQIVQQRVFLKKVCRKCGALNPIRATKCRRCHSTNLRLKKKELPTKKG

Sequences:

>Translated_56_residues
MPLTDPAKLQIVQQRVFLKKVCRKCGALNPIRATKCRRCHSTNLRLKKKELPTKKG
>Mature_55_residues
PLTDPAKLQIVQQRVFLKKVCRKCGALNPIRATKCRRCHSTNLRLKKKELPTKKG

Specific function: Unknown

COG id: COG1552

COG function: function code J; Ribosomal protein L40E

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L40e family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RL40_SULIA (C3MZT1)

Other databases:

- EMBL:   CP001401
- RefSeq:   YP_002843958.1
- ProteinModelPortal:   C3MZT1
- SMR:   C3MZT1
- GeneID:   7812150
- GenomeReviews:   CP001401_GR
- KEGG:   sim:M1627_2044
- OMA:   SKNLRPK
- ProtClustDB:   PRK04136
- GO:   GO:0005840
- GO:   GO:0006412
- HAMAP:   MF_00788
- InterPro:   IPR001975

Pfam domain/function: PF01020 Ribosomal_L40e

EC number: NA

Molecular weight: Translated: 6445; Mature: 6314

Theoretical pI: Translated: 11.53; Mature: 11.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

7.1 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
8.9 %Cys+Met (Translated Protein)
7.3 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
7.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPLTDPAKLQIVQQRVFLKKVCRKCGALNPIRATKCRRCHSTNLRLKKKELPTKKG
CCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCEECCCCCCCCCC
>Mature Secondary Structure 
PLTDPAKLQIVQQRVFLKKVCRKCGALNPIRATKCRRCHSTNLRLKKKELPTKKG
CCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA