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The map label for this gene is yidA [C]

Identifier: 15897056

GI number: 15897056

Start: 76025

End: 76711

Strand: Reverse

Name: yidA [C]

Synonym: SSO0094

Alternate gene names: 15897056

Gene position: 76711-76025 (Counterclockwise)

Preceding gene: 15897057

Following gene: 15897055

Centisome position: 2.56

GC content: 34.64

Gene sequence:

>687_bases
ATGATAAAATTAGTTTTAGTGGATTTAGATGGAACGCTGACTGAAGATAGGGAATCTACTCGAATAGACTTAGATGCCAT
TTACGCAATAAGGCTCTTACAAAAAAGCGGGATCAAAGTAAGTTTAGTTAGCGGAAATTCCTATCCAATTCTAAGAGGAC
TTTACACATATCTTTATTTAGACGGTGGTTTTGTTGCAGAAAACGGATGTATAGTATTTTACAAAGAAAAGTATAGAATG
TGTAGGCAAATGGAGCAGAGCCTAGTAGATGAATTCAAATCTTTATTCAAGTTAAGGGATACATGGCAAAATGAATATAG
GGAATGTGATTTCGGTTTTGTTCCTGCAAAAATAACTGATGAGATGATAAATTGGGCTAAAGAAAGGAATCTTTACATTA
AAAGTAGTGGATATGCGGTTCATATTGCATATAATCCAGCGGGGAAAAGAATAGGAGTAGAGAAGTTGCTTCAATTACTT
GGTCTAAAGAAAGAAGACGTAGCGGCTATTGGCGATTCATCAACTGACATAGAACTATTTCAACAAGTTGGATTTAAGGT
TGCGGTAGGAAATGCTGATGATGAACTGAAAGATATAGCCGATTATATAACAAGTAATAAAAGTGGAAAAGGTGTAAGGG
AATTTGTGGATAAATTACTAAAAGGGGAGTTTGATGGAATTAAATGA

Upstream 100 bases:

>100_bases
GGTATAAGTCCACTTTAATTAACCATATACCAGAGACTTTAACTATAAGAAGAATTTATGTAGATCATGAATACGCTAAA
AAAGCTAGAGATGTAGTTCC

Downstream 100 bases:

>100_bases
ATTACGAGAAACTATTTATAAATATGCTCTTCAAAATGCGGTAAAGCATAATGGGAAAGCCGAAACGGGTCCAGTGATGA
GTAAGATTATAGCGGAGAGG

Product: hypothetical protein

Products: NA

Alternate protein names: PGP 1; PGPase 1

Number of amino acids: Translated: 228; Mature: 228

Protein sequence:

>228_residues
MIKLVLVDLDGTLTEDRESTRIDLDAIYAIRLLQKSGIKVSLVSGNSYPILRGLYTYLYLDGGFVAENGCIVFYKEKYRM
CRQMEQSLVDEFKSLFKLRDTWQNEYRECDFGFVPAKITDEMINWAKERNLYIKSSGYAVHIAYNPAGKRIGVEKLLQLL
GLKKEDVAAIGDSSTDIELFQQVGFKVAVGNADDELKDIADYITSNKSGKGVREFVDKLLKGEFDGIK

Sequences:

>Translated_228_residues
MIKLVLVDLDGTLTEDRESTRIDLDAIYAIRLLQKSGIKVSLVSGNSYPILRGLYTYLYLDGGFVAENGCIVFYKEKYRM
CRQMEQSLVDEFKSLFKLRDTWQNEYRECDFGFVPAKITDEMINWAKERNLYIKSSGYAVHIAYNPAGKRIGVEKLLQLL
GLKKEDVAAIGDSSTDIELFQQVGFKVAVGNADDELKDIADYITSNKSGKGVREFVDKLLKGEFDGIK
>Mature_228_residues
MIKLVLVDLDGTLTEDRESTRIDLDAIYAIRLLQKSGIKVSLVSGNSYPILRGLYTYLYLDGGFVAENGCIVFYKEKYRM
CRQMEQSLVDEFKSLFKLRDTWQNEYRECDFGFVPAKITDEMINWAKERNLYIKSSGYAVHIAYNPAGKRIGVEKLLQLL
GLKKEDVAAIGDSSTDIELFQQVGFKVAVGNADDELKDIADYITSNKSGKGVREFVDKLLKGEFDGIK

Specific function: Catalyzes the dephosphorylation of 2-phosphoglycolate

COG id: COG0561

COG function: function code R; Predicted hydrolases of the HAD superfamily

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the archaeal SPP-like hydrolase family

Homologues:

Organism=Escherichia coli, GI2367265, Length=270, Percent_Identity=25.1851851851852, Blast_Score=62, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): PGP1_SULSO (P95967)

Other databases:

- EMBL:   Y08257
- EMBL:   AE006641
- PIR:   S75394
- RefSeq:   NP_341661.1
- ProteinModelPortal:   P95967
- SMR:   P95967
- GeneID:   1453279
- GenomeReviews:   AE006641_GR
- KEGG:   sso:SSO0094
- NMPDR:   fig|273057.1.peg.84
- HOGENOM:   HBG551920
- OMA:   NKCRKYD
- ProtClustDB:   CLSK802552
- BioCyc:   SSOL273057:SSO0094-MONOMER
- BRENDA:   3.1.3.18
- HAMAP:   MF_01419
- InterPro:   IPR005834
- InterPro:   IPR023214
- InterPro:   IPR006379
- InterPro:   IPR006382
- InterPro:   IPR006378
- Gene3D:   G3DSA:3.40.50.1000
- TIGRFAMs:   TIGR01484
- TIGRFAMs:   TIGR01487
- TIGRFAMs:   TIGR01482

Pfam domain/function: PF00702 Hydrolase; SSF56784 SSF56784

EC number: =3.1.3.18

Molecular weight: Translated: 25843; Mature: 25843

Theoretical pI: Translated: 5.21; Mature: 5.21

Prosite motif: NA

Important sites: ACT_SITE 8-8 BINDING 149-149

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIKLVLVDLDGTLTEDRESTRIDLDAIYAIRLLQKSGIKVSLVSGNSYPILRGLYTYLYL
CEEEEEEECCCCCCCCCCCCEEHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHEE
DGGFVAENGCIVFYKEKYRMCRQMEQSLVDEFKSLFKLRDTWQNEYRECDFGFVPAKITD
CCCEEECCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHH
EMINWAKERNLYIKSSGYAVHIAYNPAGKRIGVEKLLQLLGLKKEDVAAIGDSSTDIELF
HHHHHHHHCCEEEEECCEEEEEEECCCCCCCCHHHHHHHHCCCCHHHHHCCCCCCHHHHH
QQVGFKVAVGNADDELKDIADYITSNKSGKGVREFVDKLLKGEFDGIK
HHCCCEEEECCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MIKLVLVDLDGTLTEDRESTRIDLDAIYAIRLLQKSGIKVSLVSGNSYPILRGLYTYLYL
CEEEEEEECCCCCCCCCCCCEEHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHEE
DGGFVAENGCIVFYKEKYRMCRQMEQSLVDEFKSLFKLRDTWQNEYRECDFGFVPAKITD
CCCEEECCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHH
EMINWAKERNLYIKSSGYAVHIAYNPAGKRIGVEKLLQLLGLKKEDVAAIGDSSTDIELF
HHHHHHHHCCEEEEECCEEEEEEECCCCCCCCHHHHHHHHCCCCHHHHHCCCCCCHHHHH
QQVGFKVAVGNADDELKDIADYITSNKSGKGVREFVDKLLKGEFDGIK
HHCCCEEEECCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8899719; 11427726