| Definition | Sulfolobus solfataricus P2 chromosome, complete genome. |
|---|---|
| Accession | NC_002754 |
| Length | 2,992,245 |
Click here to switch to the map view.
The map label for this gene is dpo3
Identifier: 15897046
GI number: 15897046
Start: 64034
End: 66328
Strand: Reverse
Name: dpo3
Synonym: SSO0081
Alternate gene names: 15897046
Gene position: 66328-64034 (Counterclockwise)
Preceding gene: 15897047
Following gene: 15897042
Centisome position: 2.22
GC content: 30.85
Gene sequence:
>2295_bases ATGATTAAGGATTTCTTTATATTAGATTTCTCTTATGAAATCAAGGGTAACACTCCACTAGTTTACATTTGGAGCGTTGA TGATGAAGGAAACAGTAGTGTGGTTATAGATAATAATTTTAGACCATATTTTTATATAATATATGAGGGCAATGAGAATG AAATAATTGAGAATATAAAAAAGAATTGTGAAGCTCTCCAAATCACTAAAGTTAAAAGGAAATACTTAGGTAATATTGTA GACGCTTTACTTATACAAACATCCACGCCTACTCAAATCAAAAAGTGTAGAGAAAAAATCAGCGAACTAAATAATATAAA AGGCATTTTCGATGCGGATATAAGGTATACTATGAGATATTCACTAGATTTTGATCTTAGGCCATTTACTTGGTTTAGAG CGGAGGTAAATGAAGTAAAGTTTGATGGATTTCGCACGAAGAAAGCATACATTTTAGATAAGATTCTTTCACATTATGAG GGTAATATGCCAGAATTAAGAACTATTGGAGTCGATTTTCAGATCTACAGTAAATATGGCTCGTTAAATCCTAGAAAAGA TCCGATAGTAGTTATGAGTTTATGGAGCAAGGAAGGTCCTATGCAGTTTAGTTTAGATGAAGGTATAGACGATCTCAAAA TTATAAGGAGATTCGTTGACTACATATTAAATTATGATCCTGATATAATATTTGTATATGATTCAGATCTCCTTCCCTGG AAATATATTACAGAAAGAGCTAGTTCATTAGGAGTAAAAATAGATATAGGAAGGAAAATAGGTTCTGAGGTAAGTGTGGG TACTTATGGACACTACTCGATTTCTGGAAGGCTTAATGTAGATTTAACTGGTTTACTAGTAAATGAAAGGTCATTAGGAC ATGTAGATTTAATCGACGTAAGTAATTATTTAGGTATATCTCCTAGTCGTTACTCTTTTAAGTGGTATGAAATTTCTAGA TATTGGGATAACGAGAAGAATAGAAGAATTATTAGAGAATATAGTATAGAAAACGCTAGATCAATATATTTATTAGGTAA CTATCTACTATCTACCTATAGTGAACTAGTTAAGATAGTTGGTCTACCTTTAGATAAATTATCAGTAGCTAGTTGGGGAA ATAGAATAGAGACTTCACTAATAAGGACTGCTACAAAATCTGGGGAATTAATTCCTATTCGAATGGATAATCCTAACCGT CCTTCAAAAATAAAAAAGAATATAATTATTCAACCAAAAGTTGGTATCTATACTGATGTTTATGTTCTTGATATATCTTC AGTTTATTCATTAGTGATAAGAAAATTTAATATAGCTCCAGATACTTTAGTCAAAGAGCAGTGCGATGATTGTTATAGTT CCCCAATTTCTAATTACAAATTTAAGAGAGAACCGTCTGGCCTTTACAAGACATTTTTAGATGAGTTAAGTAATGTTCGA GATTCTAACAAAATAAAGGTTATTGAAGAGTTAATATCGTCATTTAATGATTATGTTCATTGGGTAAATGCAAGATGGTA TTCGAGAGAAATTGCCAGTGCTTTTGATGAATTTAGTAATGAAATAATTAGATTCATTATAGATCTAATTAAAAGTTCAG GTTTAGATGTGATTTTAGCTAATGACCTTTTAATATTTGTGACAGGCGGATCTAGAGATAAAGTAAATGAGTTAATAACT AAGATAAATAGCTTATATAATCTAGACGTTAAGGTAAAAATATTTTACAAATCATTATTGGTCTTAGATAATAATAGATA TGCGGGGCTATCGGAGGGAGATAAGATAGATATTGCTAGAAAAGGGGAAGAGGATATGAATCTTTGTGAATTAGCTAGGA ATATAAAAAGAAAGATTATAGAGGAGATATTAATTAGCAAAGACGTTAAGAAAGCGATAAAGCTAGTTAAATCTACGGTA ATCAAGTTAAGGAGAGGGGAATTTGATAATGAAGAATTAATAACTTGGGCGAAGATAGAAAGAGATCTCAACGAATATAA TAATCAGTTACCTTTTGTAACTGCTGCGAGAAAGGCCATTCAATCTGGCTATTTAATATCTAAAGATTCGAAAATAGGTT ATGTTATTGTAAAAGGTCTTGGCCCTCTAAATGACCGCGCTGAACCTTTCTTTCTTGTAAAAGAGAAAAACAGAATAGAT ATTGAATATTACGTTGATCAGATATTTAGAGAAACCCTAAAGCTACTCAAGCCTTTAGGAGTAAATGAGGAAAGTTTGAA AAAAACTAATATAACTGATATACTAGACTTATTTGGAGCTTCTAAGAAGAAATAA
Upstream 100 bases:
>100_bases GCACGCATTTGTGATGGTAAAGAATTTATATTATAAATATCTGGATTAATTGTTAAAAACTTTGAATAAATTAAAAAGCT AGTCATTTAGTTAGTAATAT
Downstream 100 bases:
>100_bases TATCGGTAAATGTCAATATATCGACGTTTTGCGGTCTTTTGTTTATTCCACCTATTCTAGCTCCTATTATCATTTTAATG TTTTTTTGAGACGCTAAATC
Product: DNA polymerase III (DNA polymerase B3) (pfu polymerase). (dpo3)
Products: NA
Alternate protein names: DNA polymerase B3; DNA polymerase III
Number of amino acids: Translated: 764; Mature: 764
Protein sequence:
>764_residues MIKDFFILDFSYEIKGNTPLVYIWSVDDEGNSSVVIDNNFRPYFYIIYEGNENEIIENIKKNCEALQITKVKRKYLGNIV DALLIQTSTPTQIKKCREKISELNNIKGIFDADIRYTMRYSLDFDLRPFTWFRAEVNEVKFDGFRTKKAYILDKILSHYE GNMPELRTIGVDFQIYSKYGSLNPRKDPIVVMSLWSKEGPMQFSLDEGIDDLKIIRRFVDYILNYDPDIIFVYDSDLLPW KYITERASSLGVKIDIGRKIGSEVSVGTYGHYSISGRLNVDLTGLLVNERSLGHVDLIDVSNYLGISPSRYSFKWYEISR YWDNEKNRRIIREYSIENARSIYLLGNYLLSTYSELVKIVGLPLDKLSVASWGNRIETSLIRTATKSGELIPIRMDNPNR PSKIKKNIIIQPKVGIYTDVYVLDISSVYSLVIRKFNIAPDTLVKEQCDDCYSSPISNYKFKREPSGLYKTFLDELSNVR DSNKIKVIEELISSFNDYVHWVNARWYSREIASAFDEFSNEIIRFIIDLIKSSGLDVILANDLLIFVTGGSRDKVNELIT KINSLYNLDVKVKIFYKSLLVLDNNRYAGLSEGDKIDIARKGEEDMNLCELARNIKRKIIEEILISKDVKKAIKLVKSTV IKLRRGEFDNEELITWAKIERDLNEYNNQLPFVTAARKAIQSGYLISKDSKIGYVIVKGLGPLNDRAEPFFLVKEKNRID IEYYVDQIFRETLKLLKPLGVNEESLKKTNITDILDLFGASKKK
Sequences:
>Translated_764_residues MIKDFFILDFSYEIKGNTPLVYIWSVDDEGNSSVVIDNNFRPYFYIIYEGNENEIIENIKKNCEALQITKVKRKYLGNIV DALLIQTSTPTQIKKCREKISELNNIKGIFDADIRYTMRYSLDFDLRPFTWFRAEVNEVKFDGFRTKKAYILDKILSHYE GNMPELRTIGVDFQIYSKYGSLNPRKDPIVVMSLWSKEGPMQFSLDEGIDDLKIIRRFVDYILNYDPDIIFVYDSDLLPW KYITERASSLGVKIDIGRKIGSEVSVGTYGHYSISGRLNVDLTGLLVNERSLGHVDLIDVSNYLGISPSRYSFKWYEISR YWDNEKNRRIIREYSIENARSIYLLGNYLLSTYSELVKIVGLPLDKLSVASWGNRIETSLIRTATKSGELIPIRMDNPNR PSKIKKNIIIQPKVGIYTDVYVLDISSVYSLVIRKFNIAPDTLVKEQCDDCYSSPISNYKFKREPSGLYKTFLDELSNVR DSNKIKVIEELISSFNDYVHWVNARWYSREIASAFDEFSNEIIRFIIDLIKSSGLDVILANDLLIFVTGGSRDKVNELIT KINSLYNLDVKVKIFYKSLLVLDNNRYAGLSEGDKIDIARKGEEDMNLCELARNIKRKIIEEILISKDVKKAIKLVKSTV IKLRRGEFDNEELITWAKIERDLNEYNNQLPFVTAARKAIQSGYLISKDSKIGYVIVKGLGPLNDRAEPFFLVKEKNRID IEYYVDQIFRETLKLLKPLGVNEESLKKTNITDILDLFGASKKK >Mature_764_residues MIKDFFILDFSYEIKGNTPLVYIWSVDDEGNSSVVIDNNFRPYFYIIYEGNENEIIENIKKNCEALQITKVKRKYLGNIV DALLIQTSTPTQIKKCREKISELNNIKGIFDADIRYTMRYSLDFDLRPFTWFRAEVNEVKFDGFRTKKAYILDKILSHYE GNMPELRTIGVDFQIYSKYGSLNPRKDPIVVMSLWSKEGPMQFSLDEGIDDLKIIRRFVDYILNYDPDIIFVYDSDLLPW KYITERASSLGVKIDIGRKIGSEVSVGTYGHYSISGRLNVDLTGLLVNERSLGHVDLIDVSNYLGISPSRYSFKWYEISR YWDNEKNRRIIREYSIENARSIYLLGNYLLSTYSELVKIVGLPLDKLSVASWGNRIETSLIRTATKSGELIPIRMDNPNR PSKIKKNIIIQPKVGIYTDVYVLDISSVYSLVIRKFNIAPDTLVKEQCDDCYSSPISNYKFKREPSGLYKTFLDELSNVR DSNKIKVIEELISSFNDYVHWVNARWYSREIASAFDEFSNEIIRFIIDLIKSSGLDVILANDLLIFVTGGSRDKVNELIT KINSLYNLDVKVKIFYKSLLVLDNNRYAGLSEGDKIDIARKGEEDMNLCELARNIKRKIIEEILISKDVKKAIKLVKSTV IKLRRGEFDNEELITWAKIERDLNEYNNQLPFVTAARKAIQSGYLISKDSKIGYVIVKGLGPLNDRAEPFFLVKEKNRID IEYYVDQIFRETLKLLKPLGVNEESLKKTNITDILDLFGASKKK
Specific function: Unknown
COG id: COG0417
COG function: function code L; DNA polymerase elongation subunit (family B)
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the DNA polymerase type-B family
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): DPOL3_SULSO (P95979)
Other databases:
- EMBL: Y08257 - EMBL: AE006641 - PIR: S75407 - RefSeq: NP_341651.1 - ProteinModelPortal: P95979 - SMR: P95979 - GeneID: 1455332 - GenomeReviews: AE006641_GR - KEGG: sso:SSO0081 - NMPDR: fig|273057.1.peg.74 - HOGENOM: HBG551224 - OMA: VMKKSER - PhylomeDB: P95979 - ProtClustDB: CLSK2484407 - BioCyc: SSOL273057:SSO0081-MONOMER - BRENDA: 2.7.7.7 - InterPro: IPR006172 - InterPro: IPR006133 - InterPro: IPR006134 - InterPro: IPR012337 - SMART: SM00486
Pfam domain/function: PF00136 DNA_pol_B; PF03104 DNA_pol_B_exo; SSF53098 RNaseH_fold
EC number: =2.7.7.7
Molecular weight: Translated: 88380; Mature: 88380
Theoretical pI: Translated: 8.60; Mature: 8.60
Prosite motif: PS00116 DNA_POLYMERASE_B
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIKDFFILDFSYEIKGNTPLVYIWSVDDEGNSSVVIDNNFRPYFYIIYEGNENEIIENIK CCCEEEEEEEEEEECCCCCEEEEEEECCCCCCEEEEECCCCCEEEEEEECCCHHHHHHHH KNCEALQITKVKRKYLGNIVDALLIQTSTPTQIKKCREKISELNNIKGIFDADIRYTMRY HCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCEEECCEEEEEEE SLDFDLRPFTWFRAEVNEVKFDGFRTKKAYILDKILSHYEGNMPELRTIGVDFQIYSKYG EEECCCCCCEEEEEECCCEEECCCCCHHHHHHHHHHHHHCCCCCCEEEEECCEEEEECCC SLNPRKDPIVVMSLWSKEGPMQFSLDEGIDDLKIIRRFVDYILNYDPDIIFVYDSDLLPW CCCCCCCCEEEEEEECCCCCEEEEHHCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCH KYITERASSLGVKIDIGRKIGSEVSVGTYGHYSISGRLNVDLTGLLVNERSLGHVDLIDV HHHHHHHHHCCEEEEECCCCCCCCCCCCCCEEEECCEEEEEEEEEEEECCCCCCEEEEEC SNYLGISPSRYSFKWYEISRYWDNEKNRRIIREYSIENARSIYLLGNYLLSTYSELVKIV CCCCCCCCCCCEEEEEEEEEHHCCCCCCHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHH GLPLDKLSVASWGNRIETSLIRTATKSGELIPIRMDNPNRPSKIKKNIIIQPKVGIYTDV CCCHHHHHHHHCCCHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHCCEEECCCCCCEEEE YVLDISSVYSLVIRKFNIAPDTLVKEQCDDCYSSPISNYKFKREPSGLYKTFLDELSNVR EEEEHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCEECCCCCHHHHHHHHHHHCCC DSNKIKVIEELISSFNDYVHWVNARWYSREIASAFDEFSNEIIRFIIDLIKSSGLDVILA CCCHHHHHHHHHHHHHHHEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEE NDLLIFVTGGSRDKVNELITKINSLYNLDVKVKIFYKSLLVLDNNRYAGLSEGDKIDIAR CCEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEEEEEEEEEEECCCCCCCCCCCEEEEEC KGEEDMNLCELARNIKRKIIEEILISKDVKKAIKLVKSTVIKLRRGEFDNEELITWAKIE CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH RDLNEYNNQLPFVTAARKAIQSGYLISKDSKIGYVIVKGLGPLNDRAEPFFLVKEKNRID HHHHHHCCCCCHHHHHHHHHHCCCEEECCCCEEEEEEECCCCCCCCCCCEEEEECCCCEE IEYYVDQIFRETLKLLKPLGVNEESLKKTNITDILDLFGASKKK HHHHHHHHHHHHHHHHCCCCCCHHHHHHCCHHHHHHHHCCCCCC >Mature Secondary Structure MIKDFFILDFSYEIKGNTPLVYIWSVDDEGNSSVVIDNNFRPYFYIIYEGNENEIIENIK CCCEEEEEEEEEEECCCCCEEEEEEECCCCCCEEEEECCCCCEEEEEEECCCHHHHHHHH KNCEALQITKVKRKYLGNIVDALLIQTSTPTQIKKCREKISELNNIKGIFDADIRYTMRY HCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCEEECCEEEEEEE SLDFDLRPFTWFRAEVNEVKFDGFRTKKAYILDKILSHYEGNMPELRTIGVDFQIYSKYG EEECCCCCCEEEEEECCCEEECCCCCHHHHHHHHHHHHHCCCCCCEEEEECCEEEEECCC SLNPRKDPIVVMSLWSKEGPMQFSLDEGIDDLKIIRRFVDYILNYDPDIIFVYDSDLLPW CCCCCCCCEEEEEEECCCCCEEEEHHCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCH KYITERASSLGVKIDIGRKIGSEVSVGTYGHYSISGRLNVDLTGLLVNERSLGHVDLIDV HHHHHHHHHCCEEEEECCCCCCCCCCCCCCEEEECCEEEEEEEEEEEECCCCCCEEEEEC SNYLGISPSRYSFKWYEISRYWDNEKNRRIIREYSIENARSIYLLGNYLLSTYSELVKIV CCCCCCCCCCCEEEEEEEEEHHCCCCCCHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHH GLPLDKLSVASWGNRIETSLIRTATKSGELIPIRMDNPNRPSKIKKNIIIQPKVGIYTDV CCCHHHHHHHHCCCHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHCCEEECCCCCCEEEE YVLDISSVYSLVIRKFNIAPDTLVKEQCDDCYSSPISNYKFKREPSGLYKTFLDELSNVR EEEEHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCEECCCCCHHHHHHHHHHHCCC DSNKIKVIEELISSFNDYVHWVNARWYSREIASAFDEFSNEIIRFIIDLIKSSGLDVILA CCCHHHHHHHHHHHHHHHEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEE NDLLIFVTGGSRDKVNELITKINSLYNLDVKVKIFYKSLLVLDNNRYAGLSEGDKIDIAR CCEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEEEEEEEEEEECCCCCCCCCCCEEEEEC KGEEDMNLCELARNIKRKIIEEILISKDVKKAIKLVKSTVIKLRRGEFDNEELITWAKIE CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH RDLNEYNNQLPFVTAARKAIQSGYLISKDSKIGYVIVKGLGPLNDRAEPFFLVKEKNRID HHHHHHCCCCCHHHHHHHHHHCCCEEECCCCEEEEEEECCCCCCCCCCCEEEEECCCCEE IEYYVDQIFRETLKLLKPLGVNEESLKKTNITDILDLFGASKKK HHHHHHHHHHHHHHHHCCCCCCHHHHHHCCHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8899719; 11427726; 9098062